Wall clock time and date at job start Tue Mar 31 2020 19:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.46990 * 2 1 4 4 C 1.46771 * 124.34560 * 269.72232 * 3 2 1 5 5 C 1.54655 * 105.37769 * 162.85664 * 4 3 2 6 6 H 1.08996 * 111.22685 * 267.57822 * 5 4 3 7 7 C 1.50708 * 110.82066 * 143.77773 * 5 4 3 8 8 O 1.21280 * 119.99734 * 340.78746 * 7 5 4 9 9 N 1.34768 * 119.99921 * 160.79093 * 7 5 4 10 10 C 1.45734 * 117.75611 * 185.02973 * 9 7 5 11 11 C 1.53381 * 109.37774 * 141.01796 * 10 9 7 12 12 C 1.52946 * 108.38601 * 54.08607 * 11 10 9 13 13 C 1.52916 * 109.79564 * 293.87146 * 12 11 10 14 14 H 1.09005 * 111.26520 * 293.35216 * 13 12 11 15 15 C 1.44193 * 117.76420 * 5.29194 * 9 7 5 16 16 H 1.09005 * 109.21938 * 332.58894 * 15 9 7 17 17 C 1.54061 * 111.76330 * 93.48165 * 15 9 7 18 18 C 1.54056 * 103.74702 * 153.25240 * 17 15 9 19 19 N 1.46889 * 107.70400 * 342.87733 * 18 17 15 20 20 C 1.36939 * 125.57803 * 177.06243 * 19 18 17 21 21 H 1.08000 * 119.99558 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00106 * 359.97020 * 20 19 18 23 23 N 1.31618 * 120.00031 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47004 * 90.00168 * 24 22 20 26 26 H 1.48498 * 109.46720 * 209.99923 * 24 22 20 27 27 H 1.48497 * 109.46992 * 329.99801 * 24 22 20 28 28 C 1.54627 * 101.68681 * 25.76772 * 5 4 3 29 29 C 1.34418 * 124.35255 * 90.02609 * 3 2 1 30 30 O 1.21280 * 124.93788 * 0.37922 * 29 3 2 31 31 H 1.08998 * 109.47157 * 300.00579 * 1 2 3 32 32 H 1.09003 * 109.46940 * 60.00216 * 1 2 3 33 33 H 1.09000 * 109.47684 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 239.99868 * 2 1 3 35 35 H 1.09003 * 109.46940 * 119.99784 * 2 1 3 36 36 H 1.09002 * 110.24410 * 281.98285 * 4 3 2 37 37 H 1.08994 * 110.24529 * 43.98291 * 4 3 2 38 38 H 1.08995 * 109.46009 * 261.15642 * 10 9 7 39 39 H 1.08999 * 109.45984 * 21.10714 * 10 9 7 40 40 H 1.09006 * 109.79778 * 294.35568 * 11 10 9 41 41 H 1.09000 * 109.74326 * 173.78881 * 11 10 9 42 42 H 1.08999 * 109.41684 * 173.76945 * 12 11 10 43 43 H 1.08999 * 109.41310 * 53.96983 * 12 11 10 44 44 H 1.09003 * 110.57061 * 271.81367 * 17 15 9 45 45 H 1.08999 * 110.57002 * 34.53662 * 17 15 9 46 46 H 1.09003 * 109.81271 * 102.42047 * 18 17 15 47 47 H 1.08999 * 109.81383 * 223.32719 * 18 17 15 48 48 H 0.97004 * 120.00049 * 180.02562 * 23 22 20 49 49 H 1.08998 * 110.48456 * 216.30619 * 28 5 4 50 50 H 1.09005 * 110.48874 * 93.66757 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2998 2.1600 -1.2118 5 6 2.3525 3.6347 -0.7486 6 1 1.3780 4.1134 -0.8443 7 6 3.4030 4.3989 -1.5126 8 8 4.2873 3.8022 -2.0896 9 7 3.3598 5.7452 -1.5545 10 6 4.3318 6.4295 -2.3976 11 6 3.6562 7.6199 -3.0900 12 6 3.0053 8.4955 -2.0181 13 6 1.8604 7.7323 -1.3510 14 1 1.0438 7.5536 -2.0506 15 6 2.3588 6.4102 -0.7577 16 1 1.5056 5.7450 -0.6250 17 6 2.9050 6.8142 0.6250 18 6 2.0419 8.0278 1.0193 19 7 1.3917 8.5282 -0.1991 20 6 0.4977 9.5639 -0.2571 21 1 0.0733 9.8583 -1.2056 22 6 0.1369 10.2352 0.9031 23 7 0.6545 9.8767 2.0589 24 14 -1.0832 11.6476 0.8239 25 1 -2.4611 11.1215 0.9960 26 1 -0.7857 12.6198 1.9063 27 1 -0.9724 12.3241 -0.4934 28 6 2.7506 3.4821 0.7377 29 6 2.2716 2.0962 1.1097 30 8 2.1353 1.6895 2.2441 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2575 1.8612 -1.6382 37 1 1.5020 2.0234 -1.9418 38 1 5.1592 6.7845 -1.7833 39 1 4.7097 5.7382 -3.1508 40 1 2.8943 7.2607 -3.7819 41 1 4.4010 8.2003 -3.6345 42 1 2.6157 9.4031 -2.4792 43 1 3.7491 8.7621 -1.2673 44 1 2.7740 6.0024 1.3406 45 1 3.9558 7.0953 0.5545 46 1 1.2859 7.7239 1.7433 47 1 2.6730 8.8064 1.4477 48 1 0.4022 10.3456 2.8697 49 1 2.2496 4.2350 1.3460 50 1 3.8321 3.5555 0.8525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049507383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:57 Heat of formation + Delta-G solvation = -33.618969 kcal Electronic energy + Delta-G solvation = -30998.750138 eV Core-core repulsion = 27026.671670 eV Total energy + Delta-G solvation = -3972.078467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25591 -39.95482 -38.21508 -36.42200 -35.16796 -34.27880 -32.91483 -32.17566 -29.94608 -29.13786 -28.50134 -27.78712 -25.15794 -24.58993 -23.72230 -22.89614 -21.73894 -20.56169 -19.92820 -19.49688 -18.20579 -17.74238 -17.11488 -16.78115 -16.15218 -15.81028 -15.28538 -14.94349 -14.84444 -14.48228 -14.17624 -14.03988 -13.91136 -13.85938 -13.44610 -13.33267 -13.30311 -12.97040 -12.63986 -12.54823 -12.19621 -12.09666 -12.02663 -11.77120 -11.46085 -11.40722 -11.27026 -11.11118 -10.98997 -10.84007 -10.74184 -10.54801 -10.26119 -10.14758 -10.01543 -9.80715 -9.71815 -9.51425 -8.88429 -8.68268 -8.45529 -6.96038 -5.79469 -3.14708 2.41168 2.53738 2.76688 3.06570 3.35135 3.40605 3.42502 4.05249 4.23305 4.37898 4.47983 4.69531 4.73606 4.88554 4.94147 5.04925 5.12709 5.15131 5.15458 5.22920 5.28329 5.38831 5.41975 5.45485 5.48151 5.51265 5.57931 5.62617 5.66472 5.75961 5.80226 5.94043 6.00028 6.06496 6.10898 6.19118 6.23363 6.36228 6.39873 6.45477 6.65926 6.79494 6.93171 6.93818 7.41444 7.48053 7.51234 7.74155 8.04802 8.11728 8.17110 9.12474 9.72155 10.35511 11.31286 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003621 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.660809 B = 7729.955880 C = 9089.410344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.128 4.128 6 H 0.118 0.882 7 C 0.523 3.477 8 O -0.545 6.545 9 N -0.579 5.579 10 C 0.116 3.884 11 C -0.131 4.131 12 C -0.131 4.131 13 C 0.162 3.838 14 H 0.056 0.944 15 C 0.123 3.877 16 H 0.088 0.912 17 C -0.157 4.157 18 C 0.178 3.822 19 N -0.596 5.596 20 C -0.230 4.230 21 H 0.078 0.922 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 C -0.142 4.142 29 C 0.523 3.477 30 O -0.529 6.529 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.042 0.958 48 H 0.253 0.747 49 H 0.117 0.883 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -14.531 -8.715 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.006 4.006 5 C -0.149 4.149 6 H 0.136 0.864 7 C 0.310 3.690 8 O -0.423 6.423 9 N -0.310 5.310 10 C -0.006 4.006 11 C -0.170 4.170 12 C -0.171 4.171 13 C 0.053 3.947 14 H 0.074 0.926 15 C 0.018 3.982 16 H 0.106 0.894 17 C -0.197 4.197 18 C 0.053 3.947 19 N -0.320 5.320 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.200 4.200 23 N -0.566 5.566 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.182 4.182 29 C 0.311 3.689 30 O -0.405 6.405 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.135 0.865 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.232 -14.920 -8.240 17.561 hybrid contribution -0.710 1.017 0.026 1.240 sum 3.522 -13.903 -8.214 16.528 Atomic orbital electron populations 1.22169 0.95672 1.02318 1.02713 1.21334 0.94419 0.81018 1.03146 1.48345 1.65960 1.13994 1.07224 1.22050 1.03174 0.88303 0.87096 1.22347 1.00647 0.96188 0.95750 0.86425 1.20086 0.85691 0.82611 0.80654 1.90664 1.36746 1.68477 1.46462 1.47073 1.33576 1.05463 1.44841 1.21407 0.90666 0.94722 0.93813 1.21910 1.00169 0.96402 0.98506 1.22113 0.99038 0.98729 0.97222 1.20895 0.94129 0.88750 0.90924 0.92570 1.21409 0.89693 0.95863 0.91225 0.89435 1.23180 1.00676 1.00596 0.95226 1.21076 0.93834 0.90698 0.89064 1.44506 1.50056 1.36501 1.00971 1.18991 1.16514 1.06485 0.93855 0.90387 1.24791 1.00175 0.99677 0.95406 1.69949 1.46190 1.42769 0.97688 0.86134 0.80855 0.81753 0.77082 1.21552 1.21668 1.20696 1.22417 1.04477 0.96573 0.94771 1.20775 0.76284 0.87495 0.84376 1.90728 1.53359 1.75423 1.21033 0.92066 0.92308 0.91442 0.90294 0.89992 0.88858 0.89987 0.92025 0.89561 0.91764 0.91108 0.91803 0.91914 0.91706 0.92007 0.92780 0.94025 0.93628 0.86503 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.15 0.38 -1.01 16 2 C 0.12 1.08 6.65 -4.04 -0.03 1.06 16 3 N -0.62 -6.79 2.93 -172.30 -0.51 -7.30 16 4 C 0.12 1.15 6.83 -3.02 -0.02 1.13 16 5 C -0.13 -1.41 2.59 -90.04 -0.23 -1.64 16 6 H 0.12 1.21 6.21 -51.93 -0.32 0.89 16 7 C 0.52 6.84 6.72 -10.99 -0.07 6.77 16 8 O -0.55 -8.29 14.84 5.56 0.08 -8.21 16 9 N -0.58 -7.82 2.79 -167.37 -0.47 -8.29 16 10 C 0.12 1.49 6.23 -4.26 -0.03 1.46 16 11 C -0.13 -1.65 6.12 -26.56 -0.16 -1.81 16 12 C -0.13 -2.12 5.31 -26.80 -0.14 -2.26 16 13 C 0.16 2.89 3.29 -67.22 -0.22 2.67 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.12 1.86 2.54 -68.48 -0.17 1.68 16 16 H 0.09 1.25 5.43 -51.93 -0.28 0.97 16 17 C -0.16 -2.61 6.37 -25.63 -0.16 -2.78 16 18 C 0.18 3.94 5.39 -3.28 -0.02 3.92 16 19 N -0.60 -13.60 2.94 -163.75 -0.48 -14.09 16 20 C -0.23 -5.93 10.27 -15.06 -0.15 -6.08 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 23 N -0.92 -25.64 10.29 55.49 0.57 -25.07 16 24 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 C -0.14 -1.69 5.81 -26.75 -0.16 -1.85 16 29 C 0.52 7.11 8.02 -10.86 -0.09 7.02 16 30 O -0.53 -9.10 17.59 5.56 0.10 -9.00 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 36 H 0.09 0.99 6.86 -51.93 -0.36 0.64 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.09 7.04 -51.93 -0.37 0.72 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.11 8.02 -51.93 -0.42 0.69 16 44 H 0.06 0.97 5.77 -51.93 -0.30 0.67 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.05 1.34 7.25 -51.93 -0.38 0.96 16 47 H 0.04 1.04 7.60 -51.93 -0.39 0.65 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.12 1.42 6.31 -51.93 -0.33 1.09 16 50 H 0.11 1.29 7.89 -51.93 -0.41 0.88 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -31.01 382.12 -9.50 -40.51 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.16 Total: 1.45 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.37 Total: 8.08 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.88 Total: -54.74 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.18 Total: -17.21 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.01 -9.50 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049507383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.895 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds