Wall clock time and date at job start Tue Mar 31 2020 19:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.46990 * 2 1 4 4 C 1.46771 * 124.34560 * 269.72232 * 3 2 1 5 5 C 1.54655 * 105.37769 * 162.85664 * 4 3 2 6 6 H 1.08996 * 111.22685 * 267.57822 * 5 4 3 7 7 C 1.50708 * 110.82066 * 143.77773 * 5 4 3 8 8 O 1.21280 * 119.99734 * 340.78746 * 7 5 4 9 9 N 1.34768 * 119.99921 * 160.79093 * 7 5 4 10 10 C 1.45734 * 117.75611 * 185.02973 * 9 7 5 11 11 C 1.53381 * 109.37774 * 141.01796 * 10 9 7 12 12 C 1.52946 * 108.38601 * 54.08607 * 11 10 9 13 13 C 1.52916 * 109.79564 * 293.87146 * 12 11 10 14 14 H 1.09005 * 111.26520 * 293.35216 * 13 12 11 15 15 C 1.44193 * 117.76420 * 5.29194 * 9 7 5 16 16 H 1.09005 * 109.21938 * 332.58894 * 15 9 7 17 17 C 1.54061 * 111.76330 * 93.48165 * 15 9 7 18 18 C 1.54056 * 103.74702 * 153.25240 * 17 15 9 19 19 N 1.46889 * 107.70400 * 342.87733 * 18 17 15 20 20 C 1.36939 * 125.57803 * 177.06243 * 19 18 17 21 21 H 1.08000 * 119.99558 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00106 * 359.97020 * 20 19 18 23 23 N 1.31618 * 120.00031 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99863 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47004 * 90.00168 * 24 22 20 26 26 H 1.48498 * 109.46720 * 209.99923 * 24 22 20 27 27 H 1.48497 * 109.46992 * 329.99801 * 24 22 20 28 28 C 1.54627 * 101.68681 * 25.76772 * 5 4 3 29 29 C 1.34418 * 124.35255 * 90.02609 * 3 2 1 30 30 O 1.21280 * 124.93788 * 0.37922 * 29 3 2 31 31 H 1.08998 * 109.47157 * 300.00579 * 1 2 3 32 32 H 1.09003 * 109.46940 * 60.00216 * 1 2 3 33 33 H 1.09000 * 109.47684 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 239.99868 * 2 1 3 35 35 H 1.09003 * 109.46940 * 119.99784 * 2 1 3 36 36 H 1.09002 * 110.24410 * 281.98285 * 4 3 2 37 37 H 1.08994 * 110.24529 * 43.98291 * 4 3 2 38 38 H 1.08995 * 109.46009 * 261.15642 * 10 9 7 39 39 H 1.08999 * 109.45984 * 21.10714 * 10 9 7 40 40 H 1.09006 * 109.79778 * 294.35568 * 11 10 9 41 41 H 1.09000 * 109.74326 * 173.78881 * 11 10 9 42 42 H 1.08999 * 109.41684 * 173.76945 * 12 11 10 43 43 H 1.08999 * 109.41310 * 53.96983 * 12 11 10 44 44 H 1.09003 * 110.57061 * 271.81367 * 17 15 9 45 45 H 1.08999 * 110.57002 * 34.53662 * 17 15 9 46 46 H 1.09003 * 109.81271 * 102.42047 * 18 17 15 47 47 H 1.08999 * 109.81383 * 223.32719 * 18 17 15 48 48 H 0.97004 * 120.00049 * 180.02562 * 23 22 20 49 49 H 1.08998 * 110.48456 * 216.30619 * 28 5 4 50 50 H 1.09005 * 110.48874 * 93.66757 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2998 2.1600 -1.2118 5 6 2.3525 3.6347 -0.7486 6 1 1.3780 4.1134 -0.8443 7 6 3.4030 4.3989 -1.5126 8 8 4.2873 3.8022 -2.0896 9 7 3.3598 5.7452 -1.5545 10 6 4.3318 6.4295 -2.3976 11 6 3.6562 7.6199 -3.0900 12 6 3.0053 8.4955 -2.0181 13 6 1.8604 7.7323 -1.3510 14 1 1.0438 7.5536 -2.0506 15 6 2.3588 6.4102 -0.7577 16 1 1.5056 5.7450 -0.6250 17 6 2.9050 6.8142 0.6250 18 6 2.0419 8.0278 1.0193 19 7 1.3917 8.5282 -0.1991 20 6 0.4977 9.5639 -0.2571 21 1 0.0733 9.8583 -1.2056 22 6 0.1369 10.2352 0.9031 23 7 0.6545 9.8767 2.0589 24 14 -1.0832 11.6476 0.8239 25 1 -2.4611 11.1215 0.9960 26 1 -0.7857 12.6198 1.9063 27 1 -0.9724 12.3241 -0.4934 28 6 2.7506 3.4821 0.7377 29 6 2.2716 2.0962 1.1097 30 8 2.1353 1.6895 2.2441 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2575 1.8612 -1.6382 37 1 1.5020 2.0234 -1.9418 38 1 5.1592 6.7845 -1.7833 39 1 4.7097 5.7382 -3.1508 40 1 2.8943 7.2607 -3.7819 41 1 4.4010 8.2003 -3.6345 42 1 2.6157 9.4031 -2.4792 43 1 3.7491 8.7621 -1.2673 44 1 2.7740 6.0024 1.3406 45 1 3.9558 7.0953 0.5545 46 1 1.2859 7.7239 1.7433 47 1 2.6730 8.8064 1.4477 48 1 0.4022 10.3456 2.8697 49 1 2.2496 4.2350 1.3460 50 1 3.8321 3.5555 0.8525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049507383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:56 Heat of formation + Delta-G solvation = -51.849733 kcal Electronic energy + Delta-G solvation = -30999.540683 eV Core-core repulsion = 27026.671670 eV Total energy + Delta-G solvation = -3972.869013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.32096 -41.06736 -39.52171 -37.49537 -36.58856 -35.20916 -34.05034 -33.93715 -30.86565 -30.75109 -29.87799 -28.76467 -26.41071 -26.25577 -24.69197 -23.84957 -22.95732 -22.08789 -21.25387 -20.45231 -19.40228 -18.88351 -18.68288 -17.82742 -17.22403 -16.88596 -16.69580 -16.34357 -16.04300 -15.98240 -15.34285 -15.13899 -15.08066 -14.77250 -14.70799 -14.44706 -14.35522 -14.13081 -13.98264 -13.75242 -13.42699 -13.30103 -13.10331 -12.87323 -12.79675 -12.67350 -12.46772 -12.44906 -12.27641 -12.22275 -12.02610 -11.99862 -11.86799 -11.55554 -11.46120 -11.37097 -10.99569 -10.69661 -10.64755 -9.77417 -9.63718 -8.86187 -7.80790 -5.16148 1.37278 1.49104 1.49522 1.49683 1.58019 1.82270 2.06256 2.52120 3.06116 3.33050 3.37028 3.45044 3.64216 3.74528 3.84036 3.84302 4.01712 4.07010 4.13094 4.16157 4.19339 4.25567 4.41662 4.48552 4.49946 4.54411 4.62257 4.63583 4.68579 4.71993 4.81547 4.85374 4.91079 4.93233 4.95905 5.06825 5.08341 5.18008 5.28986 5.36581 5.48541 5.55379 5.59342 5.62048 5.69090 5.81684 6.01006 6.21722 6.31927 7.03686 7.06746 7.14162 7.81375 8.43501 9.28541 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003621 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.660809 B = 7729.955880 C = 9089.410344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.614 5.614 4 C 0.121 3.879 5 C -0.123 4.123 6 H 0.131 0.869 7 C 0.530 3.470 8 O -0.560 6.560 9 N -0.579 5.579 10 C 0.114 3.886 11 C -0.117 4.117 12 C -0.123 4.123 13 C 0.155 3.845 14 H 0.062 0.938 15 C 0.142 3.858 16 H 0.103 0.897 17 C -0.142 4.142 18 C 0.189 3.811 19 N -0.614 5.614 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.062 4.062 23 N -0.950 5.950 24 Si 0.971 3.029 25 H -0.287 1.287 26 H -0.300 1.300 27 H -0.269 1.269 28 C -0.139 4.139 29 C 0.515 3.485 30 O -0.575 6.575 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.000 1.000 48 H 0.244 0.756 49 H 0.113 0.887 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -16.021 -11.599 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.347 5.347 4 C -0.001 4.001 5 C -0.144 4.144 6 H 0.148 0.852 7 C 0.318 3.682 8 O -0.439 6.439 9 N -0.309 5.309 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.163 4.163 13 C 0.048 3.952 14 H 0.080 0.920 15 C 0.036 3.964 16 H 0.120 0.880 17 C -0.182 4.182 18 C 0.063 3.937 19 N -0.339 5.339 20 C -0.360 4.360 21 H 0.102 0.898 22 C -0.256 4.256 23 N -0.599 5.599 24 Si 0.800 3.200 25 H -0.214 1.214 26 H -0.227 1.227 27 H -0.194 1.194 28 C -0.179 4.179 29 C 0.304 3.696 30 O -0.455 6.455 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.131 0.869 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.254 -16.439 -11.213 20.349 hybrid contribution -0.670 1.449 0.849 1.808 sum 3.584 -14.990 -10.364 18.573 Atomic orbital electron populations 1.22122 0.94964 1.03373 1.01827 1.21566 0.94978 0.79965 1.04028 1.48484 1.64612 1.14690 1.06879 1.22136 1.04182 0.86989 0.86822 1.22348 1.00438 0.97036 0.94586 0.85158 1.20257 0.85595 0.82183 0.80187 1.90670 1.37480 1.68580 1.47193 1.47025 1.33338 1.05729 1.44783 1.21493 0.90451 0.94863 0.93918 1.21822 1.00702 0.95727 0.97318 1.21935 0.97972 0.98714 0.97694 1.21142 0.94852 0.89601 0.89650 0.92028 1.21091 0.90407 0.94962 0.89931 0.87958 1.22996 0.99660 0.98675 0.96845 1.20750 0.92849 0.91530 0.88528 1.44732 1.49750 1.36543 1.02851 1.19354 1.16055 1.06709 0.93853 0.89805 1.25533 1.02351 1.02313 0.95363 1.70168 1.47831 1.43926 0.97959 0.85188 0.78754 0.79019 0.77036 1.21449 1.22704 1.19399 1.22360 1.04441 0.95710 0.95418 1.21033 0.76055 0.88253 0.84305 1.90701 1.55560 1.76401 1.22853 0.94675 0.91322 0.89512 0.87280 0.91252 0.89096 0.87117 0.92065 0.88559 0.90684 0.88901 0.93207 0.93824 0.89791 0.91646 0.96220 0.98129 0.94620 0.86885 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 71.98 0.74 -1.60 16 2 C 0.12 1.79 6.65 86.38 0.57 2.37 16 3 N -0.61 -12.16 2.93 -817.62 -2.40 -14.56 16 4 C 0.12 1.97 6.83 86.89 0.59 2.56 16 5 C -0.12 -2.34 2.59 -10.42 -0.03 -2.37 16 6 H 0.13 2.22 6.21 -2.39 -0.01 2.20 16 7 C 0.53 12.20 6.72 87.66 0.59 12.79 16 8 O -0.56 -15.21 14.84 -3.03 -0.04 -15.25 16 9 N -0.58 -13.97 2.79 -801.83 -2.24 -16.21 16 10 C 0.11 2.58 6.23 86.65 0.54 3.12 16 11 C -0.12 -2.59 6.12 30.70 0.19 -2.40 16 12 C -0.12 -3.84 5.31 30.55 0.16 -3.67 16 13 C 0.15 5.34 3.29 44.82 0.15 5.49 16 14 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 15 C 0.14 4.00 2.54 45.86 0.12 4.12 16 16 H 0.10 2.65 5.43 -2.38 -0.01 2.63 16 17 C -0.14 -4.66 6.37 31.31 0.20 -4.46 16 18 C 0.19 8.64 5.39 86.66 0.47 9.10 16 19 N -0.61 -28.37 2.94 -671.97 -1.97 -30.34 16 20 C -0.23 -11.99 10.27 84.03 0.86 -11.13 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 23 N -0.95 -55.21 10.29 21.65 0.22 -54.99 16 24 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 C -0.14 -3.11 5.81 30.59 0.18 -2.94 16 29 C 0.52 13.60 8.02 87.90 0.70 14.31 16 30 O -0.58 -20.06 17.59 -3.03 -0.05 -20.11 16 31 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.27 7.92 -2.39 -0.02 1.26 16 36 H 0.09 1.62 6.86 -2.39 -0.02 1.60 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 2.07 7.04 -2.39 -0.02 2.05 16 40 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.52 8.02 -2.39 -0.02 1.50 16 44 H 0.08 2.44 5.77 -2.39 -0.01 2.43 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.02 1.02 7.25 -2.39 -0.02 1.00 16 47 H 0.00 0.02 7.60 -2.39 -0.02 0.01 16 48 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 49 H 0.11 2.62 6.31 -2.39 -0.02 2.61 16 50 H 0.11 2.45 7.89 -2.38 -0.02 2.43 16 Total: -1.00 -70.05 382.12 2.97 -67.08 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.93 Total: 15.75 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.50 Total: 22.35 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -6.39 Total: -116.09 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.10 Total: -35.37 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.05 2.97 -67.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049507383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.231 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds