Wall clock time and date at job start Tue Mar 31 2020 19:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47158 * 2 1 4 4 C 1.36441 * 124.85250 * 90.02626 * 3 2 1 5 5 C 1.50703 * 125.57025 * 359.95855 * 4 3 2 6 6 C 1.34479 * 108.85967 * 179.97438 * 4 3 2 7 7 C 1.46691 * 106.33408 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94683 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00023 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99766 * 0.03040 * 8 7 6 11 11 C 1.46503 * 119.99675 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46606 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.68129 * 299.92670 * 12 11 10 14 14 C 1.53300 * 109.71015 * 179.38667 * 12 11 10 15 15 O 1.42956 * 109.22343 * 187.95702 * 14 12 11 16 16 C 1.42960 * 114.16598 * 62.58114 * 15 14 12 17 17 C 1.53710 * 109.14883 * 297.28902 * 16 15 14 18 18 N 1.47147 * 108.16329 * 52.53872 * 17 16 15 19 19 C 1.36937 * 120.98499 * 129.42746 * 18 17 16 20 20 H 1.08001 * 120.00291 * 210.73408 * 19 18 17 21 21 C 1.38809 * 119.99553 * 30.73744 * 19 18 17 22 22 N 1.31617 * 120.00572 * 11.79363 * 21 19 18 23 23 Si 1.86804 * 119.99889 * 191.79405 * 21 19 18 24 24 H 1.48503 * 109.47327 * 270.00175 * 23 21 19 25 25 H 1.48508 * 109.46899 * 30.00002 * 23 21 19 26 26 H 1.48503 * 109.47369 * 149.99598 * 23 21 19 27 27 C 1.34663 * 124.84780 * 270.30942 * 3 2 1 28 28 C 1.50698 * 125.80693 * 0.05802 * 27 3 2 29 29 H 1.09004 * 109.47254 * 300.00173 * 1 2 3 30 30 H 1.08999 * 109.47617 * 59.99990 * 1 2 3 31 31 H 1.09001 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46821 * 240.00133 * 2 1 3 33 33 H 1.08999 * 109.47617 * 120.00010 * 2 1 3 34 34 H 1.09001 * 109.47085 * 269.99897 * 5 4 3 35 35 H 1.09003 * 109.46864 * 29.99698 * 5 4 3 36 36 H 1.09001 * 109.47031 * 149.99696 * 5 4 3 37 37 H 1.08004 * 126.84044 * 180.02562 * 6 4 3 38 38 H 0.97000 * 119.99639 * 359.97438 * 10 8 7 39 39 H 1.08993 * 109.47134 * 59.99912 * 11 10 8 40 40 H 1.08999 * 109.46750 * 299.99267 * 11 10 8 41 41 H 1.08993 * 109.51267 * 307.88331 * 14 12 11 42 42 H 1.09007 * 109.50459 * 68.03409 * 14 12 11 43 43 H 1.09000 * 109.51003 * 57.34590 * 16 15 14 44 44 H 1.08999 * 109.51197 * 177.49184 * 16 15 14 45 45 H 1.08999 * 109.84056 * 292.85546 * 17 16 15 46 46 H 1.09004 * 109.74422 * 172.16219 * 17 16 15 47 47 H 0.97001 * 120.00526 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.46507 * 270.18695 * 28 27 3 49 49 H 1.09003 * 109.47212 * 30.18380 * 28 27 3 50 50 H 1.08996 * 109.47114 * 150.18567 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2787 2.1162 1.1197 5 6 2.1101 1.6402 2.5396 6 6 2.7100 3.3349 0.7492 7 6 2.7120 3.3434 -0.7177 8 6 3.1056 4.4581 -1.5958 9 8 3.0578 4.3266 -2.8040 10 7 3.5189 5.6240 -1.0606 11 6 3.9110 6.7328 -1.9343 12 6 4.3347 7.9295 -1.0803 13 1 3.5027 8.2439 -0.4503 14 6 4.7609 9.0882 -1.9891 15 8 5.3276 10.1293 -1.1900 16 6 6.5133 9.7485 -0.4879 17 6 6.1735 8.6230 0.5022 18 7 5.4811 7.5554 -0.2369 19 6 5.8881 6.2516 -0.1384 20 1 5.7596 5.5811 -0.9753 21 6 6.4656 5.7918 1.0371 22 7 6.4142 6.5274 2.1273 23 14 7.3160 4.1289 1.0717 24 1 6.3326 3.0775 1.4358 25 1 7.8819 3.8343 -0.2694 26 1 8.4097 4.1530 2.0760 27 6 2.2692 2.1087 -1.1051 28 6 2.0944 1.6410 -2.5270 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.1008 1.8686 2.8820 35 1 2.2738 0.5634 2.5836 36 1 2.8339 2.1442 3.1801 37 1 2.9977 4.1460 1.4016 38 1 3.5567 5.7289 -0.0971 39 1 3.0668 7.0161 -2.5628 40 1 4.7447 6.4219 -2.5638 41 1 5.5020 8.7350 -2.7060 42 1 3.8908 9.4712 -2.5226 43 1 7.2609 9.3978 -1.1994 44 1 6.9042 10.6068 0.0586 45 1 5.5234 9.0060 1.2888 46 1 7.0903 8.2300 0.9418 47 1 6.8181 6.2062 2.9486 48 1 3.0198 1.1819 -2.8747 49 1 1.2868 0.9103 -2.5725 50 1 1.8501 2.4925 -3.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051008125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:29 Heat of formation + Delta-G solvation = -31.542108 kcal Electronic energy + Delta-G solvation = -30717.890375 eV Core-core repulsion = 26745.901967 eV Total energy + Delta-G solvation = -3971.988408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.44107 -40.54310 -39.60833 -36.89337 -35.25476 -34.98529 -33.58828 -33.21171 -32.12618 -30.33831 -29.98339 -28.95755 -27.26115 -25.56577 -25.20693 -24.46142 -23.35198 -22.49041 -21.39418 -20.79638 -19.67753 -18.54319 -17.82378 -17.55017 -17.13732 -16.74344 -16.32675 -16.28578 -16.22557 -15.97441 -15.57277 -15.33701 -15.15736 -14.92241 -14.52747 -14.38831 -14.17353 -14.10712 -13.98247 -13.70006 -13.51709 -13.42604 -13.18740 -13.08701 -12.91053 -12.87529 -12.71628 -12.49147 -12.47400 -12.25320 -12.15960 -12.08669 -11.99795 -11.83621 -11.28991 -10.87003 -10.58539 -10.53077 -9.85680 -9.44336 -8.90255 -8.59662 -7.85825 -5.34980 0.81698 1.39536 1.42509 1.44834 1.49283 1.85786 2.44762 2.59131 2.71540 3.05480 3.31106 3.46460 3.78159 3.78985 3.90516 4.05548 4.11390 4.17422 4.21489 4.28856 4.35610 4.39874 4.48307 4.49009 4.59371 4.63281 4.65517 4.67916 4.70650 4.74790 4.77304 4.78835 4.88561 4.98273 5.01759 5.03564 5.10824 5.12552 5.24799 5.31111 5.36694 5.61645 5.69924 5.75000 5.85567 6.15927 6.30617 6.38998 6.42027 6.86058 7.13817 7.49747 7.78351 8.33967 9.18732 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.004022 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.836696 B = 6959.740408 C = 8115.528604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.433 5.433 4 C 0.013 3.987 5 C -0.078 4.078 6 C -0.188 4.188 7 C -0.265 4.265 8 C 0.580 3.420 9 O -0.598 6.598 10 N -0.696 5.696 11 C 0.144 3.856 12 C 0.126 3.874 13 H 0.034 0.966 14 C 0.059 3.941 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.237 4.237 20 H 0.063 0.937 21 C -0.026 4.026 22 N -0.924 5.924 23 Si 0.939 3.061 24 H -0.284 1.284 25 H -0.288 1.288 26 H -0.291 1.291 27 C 0.098 3.902 28 C -0.083 4.083 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.408 0.592 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.118 0.882 43 H 0.044 0.956 44 H 0.106 0.894 45 H 0.007 0.993 46 H 0.066 0.934 47 H 0.250 0.750 48 H 0.076 0.924 49 H 0.093 0.907 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 -11.164 -2.408 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.035 4.035 3 N -0.109 5.109 4 C -0.095 4.095 5 C -0.135 4.135 6 C -0.212 4.212 7 C -0.275 4.275 8 C 0.370 3.630 9 O -0.483 6.483 10 N -0.344 5.344 11 C 0.020 3.980 12 C 0.020 3.980 13 H 0.051 0.949 14 C -0.019 4.019 15 O -0.315 6.315 16 C -0.032 4.032 17 C 0.025 3.975 18 N -0.331 5.331 19 C -0.367 4.367 20 H 0.080 0.920 21 C -0.222 4.222 22 N -0.570 5.570 23 Si 0.769 3.231 24 H -0.210 1.210 25 H -0.214 1.214 26 H -0.217 1.217 27 C -0.020 4.020 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.245 0.755 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.136 0.864 43 H 0.062 0.938 44 H 0.124 0.876 45 H 0.025 0.975 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.111 0.889 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.221 -11.427 -3.025 16.298 hybrid contribution 1.100 -0.635 0.915 1.565 sum -10.120 -12.061 -2.110 15.886 Atomic orbital electron populations 1.22130 0.92996 1.04349 1.02572 1.22255 0.96622 0.78530 1.06098 1.43859 1.50255 1.12868 1.03961 1.20556 1.06868 0.91827 0.90297 1.20396 1.03567 1.02204 0.87372 1.21872 1.08045 0.98209 0.93093 1.20250 1.17652 0.95914 0.93690 1.17662 0.76174 0.82291 0.86847 1.90608 1.58570 1.83519 1.15569 1.45827 1.64795 1.12657 1.11166 1.21078 0.98802 0.85852 0.92267 1.21552 0.90261 0.93648 0.92571 0.94884 1.22968 0.98838 0.88129 0.91983 1.87796 1.43038 1.37113 1.63566 1.23295 0.86383 0.98734 0.94748 1.21327 0.96925 0.87444 0.91849 1.44321 1.31556 1.03651 1.53570 1.19186 1.34507 0.87173 0.95838 0.91968 1.25468 1.02441 0.99361 0.94953 1.70090 1.48285 1.38661 0.99986 0.85705 0.78413 0.82378 0.76580 1.21022 1.21376 1.21739 1.20483 1.00529 0.90515 0.90491 1.20491 1.02960 1.02635 0.87897 0.92385 0.92750 0.88031 0.87702 0.87258 0.89435 0.89598 0.90843 0.85494 0.75548 0.90435 0.93393 0.93205 0.86413 0.93767 0.87650 0.97518 0.91552 0.94083 0.90569 0.88861 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.24 71.98 0.74 -1.17 16 2 C 0.08 1.25 6.08 86.38 0.53 1.77 16 3 N -0.43 -11.11 2.69 -495.48 -1.33 -12.44 16 4 C 0.01 0.38 6.85 40.98 0.28 0.66 16 5 C -0.08 -1.60 10.06 71.24 0.72 -0.88 16 6 C -0.19 -6.99 10.45 23.62 0.25 -6.74 16 7 C -0.27 -10.37 6.29 -19.04 -0.12 -10.49 16 8 C 0.58 25.09 7.81 86.61 0.68 25.77 16 9 O -0.60 -27.29 14.81 -4.12 -0.06 -27.35 16 10 N -0.70 -29.86 3.76 -466.52 -1.75 -31.62 16 11 C 0.14 5.76 4.45 86.38 0.38 6.15 16 12 C 0.13 5.14 3.21 44.97 0.14 5.28 16 13 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 14 C 0.06 2.07 6.29 72.08 0.45 2.53 16 15 O -0.40 -15.09 10.74 -148.98 -1.60 -16.69 16 16 C 0.05 1.77 7.00 72.22 0.51 2.27 16 17 C 0.15 7.07 5.41 86.49 0.47 7.53 16 18 N -0.61 -29.18 3.03 -672.92 -2.04 -31.22 16 19 C -0.24 -12.43 7.05 84.03 0.59 -11.84 16 20 H 0.06 3.41 5.80 -2.91 -0.02 3.40 16 21 C -0.03 -1.38 5.04 84.86 0.43 -0.95 16 22 N -0.92 -51.88 11.16 21.65 0.24 -51.64 16 23 Si 0.94 45.53 29.57 68.60 2.03 47.56 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 C 0.10 3.09 6.89 41.78 0.29 3.38 16 28 C -0.08 -2.14 9.26 71.24 0.66 -1.48 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 1.25 7.51 -2.38 -0.02 1.23 16 33 H 0.11 1.22 6.90 -2.39 -0.02 1.20 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.30 6.94 -2.39 -0.02 1.28 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.13 5.07 7.70 -2.91 -0.02 5.04 16 38 H 0.41 18.67 6.42 -92.71 -0.60 18.07 16 39 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.05 2.07 7.58 -2.39 -0.02 2.06 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.12 3.31 8.14 -2.38 -0.02 3.29 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.07 3.46 6.33 -2.38 -0.02 3.44 16 47 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.09 1.67 7.56 -2.39 -0.02 1.65 16 50 H 0.08 2.44 6.47 -2.39 -0.02 2.43 16 Total: -1.00 -69.74 392.77 2.82 -66.92 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.35 Total: 34.68 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.99 Total: 21.79 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -4.88 Total: -126.92 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.66 Total: -44.04 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.74 2.82 -66.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051008125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.379 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds