Wall clock time and date at job start Tue Mar 31 2020 18:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47717 * 2 1 4 4 C 1.50708 * 109.46994 * 240.00135 * 2 1 3 5 5 O 1.21280 * 119.99881 * 246.63824 * 4 2 1 6 6 N 1.34771 * 119.99870 * 66.62964 * 4 2 1 7 7 C 1.47891 * 134.34377 * 355.48189 * 6 4 2 8 8 C 1.52375 * 85.58858 * 156.51206 * 7 6 4 9 9 C 1.47891 * 134.34032 * 175.48274 * 6 4 2 10 10 C 1.53655 * 116.38958 * 141.35834 * 8 7 6 11 11 C 1.54613 * 102.72882 * 95.48547 * 10 8 7 12 12 N 1.47135 * 107.36423 * 20.75573 * 11 10 8 13 13 C 1.36932 * 125.58575 * 180.66452 * 12 11 10 14 14 H 1.07999 * 120.00051 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00029 * 0.02562 * 13 12 11 16 16 N 1.31618 * 120.00007 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46987 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46938 * 120.00446 * 17 15 13 20 20 H 1.48503 * 109.47013 * 240.00229 * 17 15 13 21 21 C 1.47720 * 108.82426 * 0.92741 * 12 11 10 22 22 N 1.46499 * 109.47014 * 120.00708 * 2 1 3 23 23 C 1.45753 * 117.94376 * 239.73429 * 22 2 1 24 24 C 1.53100 * 110.38896 * 160.74290 * 23 22 2 25 25 C 1.53346 * 108.52755 * 51.11284 * 24 23 22 26 26 C 1.53068 * 108.42482 * 292.31100 * 25 24 23 27 27 C 1.33349 * 117.94953 * 59.99424 * 22 2 1 28 28 O 1.21283 * 118.24914 * 2.20290 * 27 22 2 29 29 H 1.08998 * 109.47885 * 184.11684 * 1 2 3 30 30 H 1.09007 * 109.46652 * 304.11794 * 1 2 3 31 31 H 1.09003 * 109.47262 * 64.11049 * 1 2 3 32 32 H 1.08993 * 113.85101 * 42.34962 * 7 6 4 33 33 H 1.08996 * 113.97139 * 270.68921 * 7 6 4 34 34 H 1.08997 * 113.86014 * 89.32276 * 9 6 4 35 35 H 1.09005 * 113.85502 * 317.64915 * 9 6 4 36 36 H 1.08998 * 110.76143 * 337.18089 * 10 8 7 37 37 H 1.08997 * 110.92344 * 213.86718 * 10 8 7 38 38 H 1.09001 * 109.86164 * 261.30923 * 11 10 8 39 39 H 1.08998 * 109.97815 * 140.26665 * 11 10 8 40 40 H 0.97006 * 120.00427 * 179.97438 * 16 15 13 41 41 H 1.09000 * 110.40315 * 96.33835 * 21 12 11 42 42 H 1.09008 * 110.40246 * 218.74512 * 21 12 11 43 43 H 1.09009 * 109.30319 * 281.23862 * 23 22 2 44 44 H 1.09007 * 109.30207 * 40.60783 * 23 22 2 45 45 H 1.09004 * 109.80445 * 291.32389 * 24 23 22 46 46 H 1.09000 * 109.54687 * 170.74930 * 24 23 22 47 47 H 1.09001 * 109.67061 * 172.57794 * 25 24 23 48 48 H 1.08998 * 109.67135 * 52.04417 * 25 24 23 49 49 H 1.09001 * 109.40147 * 288.76990 * 26 25 24 50 50 H 1.08998 * 109.33003 * 168.98500 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.6271 -1.7619 -1.1234 6 7 1.8204 -0.1773 -2.4501 7 6 1.0842 1.0049 -2.9477 8 6 2.0138 0.9298 -4.1528 9 6 2.2315 -0.5418 -3.8231 10 6 1.3851 1.2377 -5.5206 11 6 1.7122 2.7361 -5.7163 12 7 2.8459 3.0569 -4.8350 13 6 3.4302 4.2884 -4.7045 14 1 4.2615 4.4228 -4.0283 15 6 2.9540 5.3641 -5.4414 16 7 1.9406 5.2005 -6.2652 17 14 3.7507 7.0443 -5.2629 18 1 4.8614 6.9636 -4.2806 19 1 4.2842 7.4814 -6.5781 20 1 2.7399 8.0234 -4.7886 21 6 3.2545 1.8312 -4.1189 22 7 2.0183 -0.6908 1.1961 23 6 2.8578 0.0584 2.1226 24 6 2.8768 -0.6215 3.4942 25 6 3.2231 -2.1026 3.2991 26 6 2.0607 -2.7789 2.5681 27 6 1.6712 -1.9670 1.3662 28 8 1.0051 -2.5005 0.5045 29 1 -0.3635 -1.0249 0.0738 30 1 -0.3633 0.5765 0.8509 31 1 -0.3634 0.4487 -0.9245 32 1 1.2227 1.8985 -2.3393 33 1 0.0387 0.8080 -3.1847 34 1 1.5372 -1.2139 -4.3275 35 1 3.2705 -0.8621 -3.9019 36 1 0.3072 1.0778 -5.4951 37 1 1.8450 0.6363 -6.3046 38 1 0.8482 3.3424 -5.4441 39 1 1.9849 2.9252 -6.7545 40 1 1.6076 5.9523 -6.7799 41 1 4.0873 1.3508 -4.6324 42 1 3.5261 2.0653 -3.0894 43 1 3.8727 0.1102 1.7280 44 1 2.4640 1.0693 2.2288 45 1 1.8970 -0.5337 3.9636 46 1 3.6305 -0.1497 4.1247 47 1 3.3711 -2.5757 4.2699 48 1 4.1321 -2.1916 2.7044 49 1 1.2077 -2.8606 3.2418 50 1 2.3662 -3.7751 2.2485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073455008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:59 Heat of formation + Delta-G solvation = 2.045079 kcal Electronic energy + Delta-G solvation = -30529.617799 eV Core-core repulsion = 26559.085840 eV Total energy + Delta-G solvation = -3970.531958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12194 -40.15871 -37.91876 -36.52907 -35.53508 -34.73001 -32.27025 -31.04027 -29.76115 -29.42123 -28.16702 -26.11681 -25.94016 -24.90282 -24.33673 -23.47871 -22.15643 -20.31749 -19.63388 -18.47346 -18.20385 -17.23494 -16.95467 -16.73465 -16.08580 -15.58738 -15.26408 -15.20279 -14.74737 -14.53265 -14.41309 -14.10878 -13.93848 -13.69089 -13.61490 -13.35881 -13.09936 -12.58225 -12.44378 -12.21826 -12.14132 -12.01469 -11.83934 -11.78259 -11.63576 -11.40688 -11.29198 -11.20336 -11.07339 -10.94125 -10.78431 -10.38047 -10.17035 -10.08177 -9.85468 -9.68722 -9.53059 -9.47336 -8.68044 -8.62532 -8.41332 -6.86278 -5.74199 -3.07643 2.53876 2.82528 2.86623 3.20039 3.37263 3.43193 3.45432 4.30827 4.39333 4.43604 4.44646 4.51710 4.58476 4.73470 4.92391 4.96368 5.06071 5.09536 5.16252 5.19620 5.24761 5.41270 5.45402 5.47555 5.53199 5.56604 5.57977 5.61925 5.66063 5.69623 5.75217 5.77541 5.85373 5.86548 5.98880 6.10592 6.19103 6.23651 6.34584 6.46983 6.54171 6.66793 6.72155 7.41333 7.53497 7.59773 7.80394 7.94941 8.20541 8.22474 8.45285 9.19235 9.79018 10.44928 11.37367 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.002893 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.599208 B = 9674.563603 C =10636.036046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.109 0.891 4 C 0.532 3.468 5 O -0.527 6.527 6 N -0.642 5.642 7 C 0.121 3.879 8 C -0.104 4.104 9 C 0.125 3.875 10 C -0.132 4.132 11 C 0.179 3.821 12 N -0.605 5.605 13 C -0.227 4.227 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.163 3.837 22 N -0.593 5.593 23 C 0.112 3.888 24 C -0.133 4.133 25 C -0.125 4.125 26 C -0.131 4.131 27 C 0.523 3.477 28 O -0.531 6.531 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.251 0.749 41 H 0.024 0.976 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -11.390 17.707 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.127 0.873 4 C 0.320 3.680 5 O -0.402 6.402 6 N -0.378 5.378 7 C -0.001 4.001 8 C -0.105 4.105 9 C 0.003 3.997 10 C -0.171 4.171 11 C 0.054 3.946 12 N -0.332 5.332 13 C -0.355 4.355 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.741 3.259 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.037 3.963 22 N -0.327 5.327 23 C -0.011 4.011 24 C -0.171 4.171 25 C -0.162 4.162 26 C -0.170 4.170 27 C 0.312 3.688 28 O -0.407 6.407 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.113 0.887 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.002 -12.132 17.479 21.371 hybrid contribution 0.432 1.074 -0.005 1.157 sum -1.571 -11.058 17.474 20.739 Atomic orbital electron populations 1.22139 0.92456 1.04807 1.02759 1.20854 0.96363 0.96371 0.84094 0.87348 1.20288 0.79690 0.84748 0.83318 1.90671 1.42185 1.21702 1.85660 1.50168 1.53328 1.29398 1.04942 1.23033 0.96128 0.87679 0.93242 1.22459 0.98334 0.94153 0.95577 1.22940 1.00921 0.96383 0.79492 1.22671 0.99366 1.00658 0.94376 1.21207 0.90830 0.87630 0.94929 1.44574 1.36472 1.04357 1.47767 1.19079 1.11615 0.84273 1.20550 0.90481 1.24787 0.98469 0.98065 0.99074 1.69969 1.27209 1.29921 1.29772 0.86064 0.78350 0.84163 0.77295 1.20552 1.21778 1.21770 1.21017 0.92136 0.87266 0.95867 1.47095 1.51618 1.11735 1.22274 1.21500 0.94999 0.95435 0.89125 1.21896 1.03078 0.96050 0.96048 1.21667 0.98350 0.95202 1.01009 1.21626 0.99977 0.99995 0.95451 1.19950 0.79772 0.81116 0.87975 1.90688 1.39033 1.68540 1.42418 0.89728 0.91742 0.91028 0.89666 0.89768 0.90033 0.90323 0.91756 0.91747 0.93509 0.93814 0.93806 0.95841 0.94348 0.91599 0.90484 0.90856 0.89679 0.90650 0.90967 0.88673 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.08 37.16 0.34 -1.62 16 2 C 0.13 1.71 2.80 -69.08 -0.19 1.52 16 3 H 0.11 1.23 7.79 -51.93 -0.40 0.82 16 4 C 0.53 8.93 6.72 -10.98 -0.07 8.86 16 5 O -0.53 -10.77 14.77 -17.48 -0.26 -11.03 16 6 N -0.64 -10.04 3.61 -186.90 -0.67 -10.72 16 7 C 0.12 1.77 6.48 -3.60 -0.02 1.74 16 8 C -0.10 -1.69 0.99 -154.85 -0.15 -1.84 16 9 C 0.13 1.90 8.21 -3.60 -0.03 1.87 16 10 C -0.13 -2.25 6.36 -25.54 -0.16 -2.42 16 11 C 0.18 4.09 5.39 -2.85 -0.02 4.07 16 12 N -0.61 -14.73 3.41 -170.50 -0.58 -15.31 16 13 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 14 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.23 10.30 55.49 0.57 -25.66 16 17 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.16 3.25 6.63 -3.17 -0.02 3.23 16 22 N -0.59 -7.16 2.65 -168.58 -0.45 -7.61 16 23 C 0.11 0.93 6.26 -4.39 -0.03 0.90 16 24 C -0.13 -0.80 6.03 -26.50 -0.16 -0.96 16 25 C -0.12 -0.86 6.03 -26.52 -0.16 -1.02 16 26 C -0.13 -1.22 6.03 -28.10 -0.17 -1.39 16 27 C 0.52 7.16 6.17 -11.87 -0.07 7.08 16 28 O -0.53 -9.50 12.54 -17.48 -0.22 -9.72 16 29 H 0.08 1.22 5.91 -51.93 -0.31 0.92 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.82 6.57 -51.93 -0.34 0.48 16 32 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 33 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.22 8.12 -51.93 -0.42 0.79 16 36 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.18 7.40 -51.93 -0.38 0.79 16 39 H 0.04 1.13 7.47 -51.93 -0.39 0.74 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.04 0.76 8.07 -51.92 -0.42 0.35 16 43 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.08 0.52 8.03 -51.92 -0.42 0.10 16 45 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -34.96 386.20 -10.51 -45.47 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.53 Total: -1.23 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: -1.17 Total: 13.45 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -1.13 Total: -59.29 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.48 Total: -20.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.96 -10.51 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073455008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.515 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds