Wall clock time and date at job start Tue Mar 31 2020 18:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47717 * 2 1 4 4 C 1.50708 * 109.46994 * 240.00135 * 2 1 3 5 5 O 1.21280 * 119.99881 * 246.63824 * 4 2 1 6 6 N 1.34771 * 119.99870 * 66.62964 * 4 2 1 7 7 C 1.47891 * 134.34377 * 355.48189 * 6 4 2 8 8 C 1.52375 * 85.58858 * 156.51206 * 7 6 4 9 9 C 1.47891 * 134.34032 * 175.48274 * 6 4 2 10 10 C 1.53655 * 116.38958 * 141.35834 * 8 7 6 11 11 C 1.54613 * 102.72882 * 95.48547 * 10 8 7 12 12 N 1.47135 * 107.36423 * 20.75573 * 11 10 8 13 13 C 1.36932 * 125.58575 * 180.66452 * 12 11 10 14 14 H 1.07999 * 120.00051 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00029 * 0.02562 * 13 12 11 16 16 N 1.31618 * 120.00007 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46987 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46938 * 120.00446 * 17 15 13 20 20 H 1.48503 * 109.47013 * 240.00229 * 17 15 13 21 21 C 1.47720 * 108.82426 * 0.92741 * 12 11 10 22 22 N 1.46499 * 109.47014 * 120.00708 * 2 1 3 23 23 C 1.45753 * 117.94376 * 239.73429 * 22 2 1 24 24 C 1.53100 * 110.38896 * 160.74290 * 23 22 2 25 25 C 1.53346 * 108.52755 * 51.11284 * 24 23 22 26 26 C 1.53068 * 108.42482 * 292.31100 * 25 24 23 27 27 C 1.33349 * 117.94953 * 59.99424 * 22 2 1 28 28 O 1.21283 * 118.24914 * 2.20290 * 27 22 2 29 29 H 1.08998 * 109.47885 * 184.11684 * 1 2 3 30 30 H 1.09007 * 109.46652 * 304.11794 * 1 2 3 31 31 H 1.09003 * 109.47262 * 64.11049 * 1 2 3 32 32 H 1.08993 * 113.85101 * 42.34962 * 7 6 4 33 33 H 1.08996 * 113.97139 * 270.68921 * 7 6 4 34 34 H 1.08997 * 113.86014 * 89.32276 * 9 6 4 35 35 H 1.09005 * 113.85502 * 317.64915 * 9 6 4 36 36 H 1.08998 * 110.76143 * 337.18089 * 10 8 7 37 37 H 1.08997 * 110.92344 * 213.86718 * 10 8 7 38 38 H 1.09001 * 109.86164 * 261.30923 * 11 10 8 39 39 H 1.08998 * 109.97815 * 140.26665 * 11 10 8 40 40 H 0.97006 * 120.00427 * 179.97438 * 16 15 13 41 41 H 1.09000 * 110.40315 * 96.33835 * 21 12 11 42 42 H 1.09008 * 110.40246 * 218.74512 * 21 12 11 43 43 H 1.09009 * 109.30319 * 281.23862 * 23 22 2 44 44 H 1.09007 * 109.30207 * 40.60783 * 23 22 2 45 45 H 1.09004 * 109.80445 * 291.32389 * 24 23 22 46 46 H 1.09000 * 109.54687 * 170.74930 * 24 23 22 47 47 H 1.09001 * 109.67061 * 172.57794 * 25 24 23 48 48 H 1.08998 * 109.67135 * 52.04417 * 25 24 23 49 49 H 1.09001 * 109.40147 * 288.76990 * 26 25 24 50 50 H 1.08998 * 109.33003 * 168.98500 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.6271 -1.7619 -1.1234 6 7 1.8204 -0.1773 -2.4501 7 6 1.0842 1.0049 -2.9477 8 6 2.0138 0.9298 -4.1528 9 6 2.2315 -0.5418 -3.8231 10 6 1.3851 1.2377 -5.5206 11 6 1.7122 2.7361 -5.7163 12 7 2.8459 3.0569 -4.8350 13 6 3.4302 4.2884 -4.7045 14 1 4.2615 4.4228 -4.0283 15 6 2.9540 5.3641 -5.4414 16 7 1.9406 5.2005 -6.2652 17 14 3.7507 7.0443 -5.2629 18 1 4.8614 6.9636 -4.2806 19 1 4.2842 7.4814 -6.5781 20 1 2.7399 8.0234 -4.7886 21 6 3.2545 1.8312 -4.1189 22 7 2.0183 -0.6908 1.1961 23 6 2.8578 0.0584 2.1226 24 6 2.8768 -0.6215 3.4942 25 6 3.2231 -2.1026 3.2991 26 6 2.0607 -2.7789 2.5681 27 6 1.6712 -1.9670 1.3662 28 8 1.0051 -2.5005 0.5045 29 1 -0.3635 -1.0249 0.0738 30 1 -0.3633 0.5765 0.8509 31 1 -0.3634 0.4487 -0.9245 32 1 1.2227 1.8985 -2.3393 33 1 0.0387 0.8080 -3.1847 34 1 1.5372 -1.2139 -4.3275 35 1 3.2705 -0.8621 -3.9019 36 1 0.3072 1.0778 -5.4951 37 1 1.8450 0.6363 -6.3046 38 1 0.8482 3.3424 -5.4441 39 1 1.9849 2.9252 -6.7545 40 1 1.6076 5.9523 -6.7799 41 1 4.0873 1.3508 -4.6324 42 1 3.5261 2.0653 -3.0894 43 1 3.8727 0.1102 1.7280 44 1 2.4640 1.0693 2.2288 45 1 1.8970 -0.5337 3.9636 46 1 3.6305 -0.1497 4.1247 47 1 3.3711 -2.5757 4.2699 48 1 4.1321 -2.1916 2.7044 49 1 1.2077 -2.8606 3.2418 50 1 2.3662 -3.7751 2.2485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073455008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:59 Heat of formation + Delta-G solvation = -19.397082 kcal Electronic energy + Delta-G solvation = -30530.547601 eV Core-core repulsion = 26559.085840 eV Total energy + Delta-G solvation = -3971.461760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20646 -41.36257 -39.24295 -37.41882 -37.18615 -35.63210 -34.09454 -32.10390 -31.13813 -30.43709 -29.62323 -27.61183 -27.32412 -25.94905 -25.40470 -24.76150 -23.01322 -22.09735 -20.70318 -19.74124 -19.28633 -18.76506 -18.25069 -17.86382 -17.17738 -16.79953 -16.52660 -16.47950 -16.27691 -15.70895 -15.53954 -15.29898 -15.12417 -14.81490 -14.51581 -14.27055 -14.20760 -14.10789 -13.78408 -13.68541 -13.36238 -13.15541 -13.11006 -13.02399 -12.82685 -12.77452 -12.49289 -12.41264 -12.13599 -11.96638 -11.92657 -11.84821 -11.80855 -11.69338 -11.64933 -11.28759 -10.76349 -10.65446 -10.48574 -9.71927 -9.65952 -8.86091 -7.81647 -5.16585 1.48495 1.49411 1.50436 1.59206 1.63531 1.89447 2.11969 2.51339 3.24017 3.34709 3.45497 3.61818 3.68923 3.75682 3.83256 3.89401 3.94962 4.00302 4.08978 4.13210 4.20496 4.39586 4.46733 4.50576 4.55210 4.55990 4.60368 4.64981 4.69836 4.75061 4.78248 4.87690 4.89598 4.91622 4.97025 5.07906 5.08519 5.10124 5.12375 5.16966 5.22343 5.35552 5.45601 5.49336 5.73770 5.83953 6.23542 6.51966 6.70319 7.11502 7.14577 7.32337 7.80494 8.44808 9.28385 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.002893 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.599208 B = 9674.563603 C =10636.036046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.129 0.871 4 C 0.524 3.476 5 O -0.571 6.571 6 N -0.643 5.643 7 C 0.130 3.870 8 C -0.095 4.095 9 C 0.128 3.872 10 C -0.114 4.114 11 C 0.186 3.814 12 N -0.624 5.624 13 C -0.238 4.238 14 H 0.079 0.921 15 C -0.062 4.062 16 N -0.948 5.948 17 Si 0.974 3.026 18 H -0.267 1.267 19 H -0.296 1.296 20 H -0.290 1.290 21 C 0.162 3.838 22 N -0.593 5.593 23 C 0.102 3.898 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.128 4.128 27 C 0.511 3.489 28 O -0.583 6.583 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.018 0.982 39 H 0.005 0.995 40 H 0.246 0.754 41 H 0.020 0.980 42 H 0.037 0.963 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.057 0.943 49 H 0.116 0.884 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -11.154 20.051 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.147 0.853 4 C 0.313 3.687 5 O -0.450 6.450 6 N -0.379 5.379 7 C 0.008 3.992 8 C -0.097 4.097 9 C 0.006 3.994 10 C -0.153 4.153 11 C 0.061 3.939 12 N -0.350 5.350 13 C -0.367 4.367 14 H 0.097 0.903 15 C -0.256 4.256 16 N -0.597 5.597 17 Si 0.803 3.197 18 H -0.192 1.192 19 H -0.223 1.223 20 H -0.217 1.217 21 C 0.037 3.963 22 N -0.325 5.325 23 C -0.020 4.020 24 C -0.163 4.163 25 C -0.158 4.158 26 C -0.168 4.168 27 C 0.301 3.699 28 O -0.463 6.463 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.076 0.924 49 H 0.134 0.866 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.110 -11.881 19.857 23.236 hybrid contribution 0.536 0.992 -0.767 1.364 sum -1.574 -10.889 19.090 22.033 Atomic orbital electron populations 1.22055 0.91490 1.03540 1.04093 1.20971 0.97101 0.96797 0.83086 0.85340 1.21007 0.78889 0.84403 0.84397 1.90643 1.44249 1.23730 1.86352 1.50246 1.53136 1.29527 1.04992 1.23117 0.96898 0.87314 0.91873 1.22261 0.97047 0.94399 0.95969 1.22973 1.01323 0.95554 0.79586 1.22527 1.01364 0.96293 0.95113 1.20981 0.89294 0.91153 0.92457 1.44841 1.36757 1.04937 1.48466 1.19421 1.11587 0.85606 1.20128 0.90314 1.25564 0.99312 1.01447 0.99233 1.70176 1.28502 1.30402 1.30631 0.85074 0.77696 0.79912 0.77024 1.19183 1.22313 1.21746 1.21091 0.93727 0.86394 0.95069 1.47283 1.51375 1.11631 1.22237 1.21821 0.94107 0.96402 0.89632 1.21915 1.04503 0.95051 0.94835 1.21671 0.96435 0.96037 1.01606 1.21669 1.01810 0.98967 0.94331 1.20757 0.78943 0.81647 0.88566 1.90657 1.41420 1.69711 1.44470 0.92371 0.89360 0.90501 0.89588 0.87228 0.87915 0.90898 0.88882 0.90513 0.96346 0.97713 0.94442 0.96206 0.94431 0.92256 0.88390 0.89806 0.87192 0.87980 0.92407 0.86638 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.08 71.98 0.65 -2.79 16 2 C 0.13 3.19 2.80 44.25 0.12 3.31 16 3 H 0.13 2.62 7.79 -2.39 -0.02 2.60 16 4 C 0.52 17.31 6.72 87.66 0.59 17.90 16 5 O -0.57 -23.71 14.77 19.00 0.28 -23.42 16 6 N -0.64 -19.24 3.61 -863.63 -3.12 -22.36 16 7 C 0.13 3.48 6.48 85.91 0.56 4.04 16 8 C -0.10 -2.95 0.99 -52.16 -0.05 -3.01 16 9 C 0.13 3.67 8.21 85.90 0.71 4.38 16 10 C -0.11 -3.72 6.36 31.36 0.20 -3.52 16 11 C 0.19 8.61 5.39 86.81 0.47 9.08 16 12 N -0.62 -30.56 3.41 -693.33 -2.36 -32.92 16 13 C -0.24 -12.93 10.28 84.03 0.86 -12.07 16 14 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 15 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 16 N -0.95 -55.25 10.30 21.65 0.22 -55.03 16 17 Si 0.97 44.60 29.55 68.60 2.03 46.63 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 C 0.16 6.38 6.63 86.28 0.57 6.95 16 22 N -0.59 -13.61 2.65 -806.44 -2.14 -15.75 16 23 C 0.10 1.46 6.26 86.55 0.54 2.00 16 24 C -0.13 -1.11 6.03 30.74 0.19 -0.92 16 25 C -0.12 -1.38 6.03 30.73 0.19 -1.19 16 26 C -0.13 -2.27 6.03 29.71 0.18 -2.09 16 27 C 0.51 13.83 6.17 87.72 0.54 14.37 16 28 O -0.58 -21.38 12.54 18.99 0.24 -21.14 16 29 H 0.06 1.66 5.91 -2.39 -0.01 1.65 16 30 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.08 1.60 6.57 -2.39 -0.02 1.58 16 32 H 0.09 2.34 8.12 -2.39 -0.02 2.32 16 33 H 0.11 2.46 7.98 -2.39 -0.02 2.45 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.07 2.19 8.12 -2.38 -0.02 2.17 16 36 H 0.09 2.54 7.99 -2.39 -0.02 2.52 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.02 0.94 7.40 -2.39 -0.02 0.93 16 39 H 0.00 0.25 7.47 -2.39 -0.02 0.23 16 40 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.04 1.47 8.07 -2.38 -0.02 1.45 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.10 1.00 8.03 -2.38 -0.02 0.98 16 45 H 0.08 0.62 8.12 -2.38 -0.02 0.60 16 46 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 49 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.68 386.20 2.84 -76.84 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.91 Total: 13.69 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: 6.78 Total: 33.46 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -7.39 Total: -126.06 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: 0.52 Total: -44.56 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.68 2.84 -76.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073455008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.440 kcal (2) G-P(sol) polarization free energy of solvation -79.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds