Wall clock time and date at job start Tue Mar 31 2020 18:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47551 * 2 1 4 4 C 1.50702 * 109.46952 * 239.99887 * 2 1 3 5 5 O 1.21281 * 120.00094 * 239.99565 * 4 2 1 6 6 N 1.34773 * 119.99840 * 60.00495 * 4 2 1 7 7 C 1.47347 * 125.53274 * 359.69043 * 6 4 2 8 8 C 1.55164 * 104.78515 * 156.47226 * 7 6 4 9 9 C 1.54805 * 101.39363 * 37.53509 * 8 7 6 10 10 H 1.09002 * 113.15189 * 85.44260 * 9 8 7 11 11 C 1.53266 * 109.74401 * 212.11788 * 9 8 7 12 12 N 1.46586 * 108.15593 * 95.76843 * 11 9 8 13 13 C 1.36944 * 125.30797 * 177.88801 * 12 11 9 14 14 H 1.08005 * 119.99328 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00470 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99744 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00264 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47188 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47285 * 120.00402 * 17 15 13 20 20 H 1.48503 * 109.47117 * 240.00169 * 17 15 13 21 21 C 1.47549 * 109.62603 * 358.29001 * 12 11 9 22 22 C 1.47223 * 125.52749 * 179.97438 * 6 4 2 23 23 H 1.09001 * 112.28632 * 56.22113 * 22 6 4 24 24 N 1.46504 * 109.46875 * 120.00410 * 2 1 3 25 25 C 1.45758 * 117.94039 * 240.01881 * 24 2 1 26 26 C 1.52921 * 110.48415 * 160.92488 * 25 24 2 27 27 C 1.53345 * 108.67449 * 50.75535 * 26 25 24 28 28 C 1.53256 * 108.26183 * 292.28357 * 27 26 25 29 29 C 1.33350 * 117.95070 * 60.00024 * 24 2 1 30 30 O 1.21283 * 118.24281 * 2.21942 * 29 24 2 31 31 H 1.09004 * 109.47330 * 59.99943 * 1 2 3 32 32 H 1.09003 * 109.46937 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46953 * 299.99702 * 1 2 3 34 34 H 1.09008 * 110.35189 * 275.42231 * 7 6 4 35 35 H 1.08999 * 110.35645 * 37.71055 * 7 6 4 36 36 H 1.08997 * 111.21342 * 279.45637 * 8 7 6 37 37 H 1.08990 * 110.95173 * 155.50601 * 8 7 6 38 38 H 1.08997 * 109.73627 * 215.44759 * 11 9 8 39 39 H 1.08993 * 109.74081 * 336.07975 * 11 9 8 40 40 H 0.97007 * 120.00274 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.81178 * 258.08443 * 21 12 11 42 42 H 1.09001 * 110.47849 * 136.50279 * 21 12 11 43 43 H 1.08997 * 109.30094 * 281.23434 * 25 24 2 44 44 H 1.08994 * 109.30118 * 40.81982 * 25 24 2 45 45 H 1.09001 * 109.60454 * 170.50740 * 26 25 24 46 46 H 1.08995 * 109.60430 * 290.99720 * 26 25 24 47 47 H 1.09002 * 109.67647 * 52.19675 * 27 26 25 48 48 H 1.09002 * 109.67893 * 172.69937 * 27 26 25 49 49 H 1.08999 * 109.60030 * 289.08971 * 28 27 26 50 50 H 1.09003 * 109.30020 * 169.29004 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8659 0.9282 -2.7305 8 6 1.2795 1.3850 -4.1545 9 6 1.5070 0.0250 -4.8580 10 1 0.5926 -0.4036 -5.2683 11 6 2.6147 0.1641 -5.9082 12 7 3.8774 -0.2650 -5.2997 13 6 5.0861 -0.3214 -5.9411 14 1 5.1599 -0.0357 -6.9801 15 6 6.2163 -0.7456 -5.2559 16 7 6.1262 -1.0941 -3.9899 17 14 7.8650 -0.8218 -6.1306 18 1 7.6990 -0.3814 -7.5390 19 1 8.8320 0.0712 -5.4429 20 1 8.3748 -2.2163 -6.1053 21 6 3.6473 -0.6373 -3.8907 22 6 2.1287 -0.8459 -3.7329 23 1 1.8441 -1.8949 -3.8139 24 7 2.0183 -0.6907 1.1962 25 6 2.8526 0.0604 2.1258 26 6 2.8763 -0.6213 3.4944 27 6 3.2232 -2.1023 3.2993 28 6 2.0556 -2.7770 2.5711 29 6 1.6713 -1.9670 1.3663 30 8 1.0055 -2.5006 0.5044 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.1890 0.6545 -2.7090 35 1 1.0687 1.7169 -2.0060 36 1 2.1984 1.9707 -4.1295 37 1 0.4754 1.9434 -4.6336 38 1 2.3878 -0.4659 -6.7682 39 1 2.6933 1.2041 -6.2247 40 1 6.9161 -1.3902 -3.5109 41 1 3.9813 0.1680 -3.2365 42 1 4.1760 -1.5592 -3.6486 43 1 3.8680 0.1169 1.7338 44 1 2.4523 1.0682 2.2356 45 1 3.6297 -0.1494 4.1251 46 1 1.8964 -0.5340 3.9636 47 1 4.1324 -2.1910 2.7047 48 1 3.3718 -2.5754 4.2700 49 1 1.2010 -2.8542 3.2432 50 1 2.3572 -3.7756 2.2548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076601042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:51 Heat of formation + Delta-G solvation = -22.280453 kcal Electronic energy + Delta-G solvation = -31397.614808 eV Core-core repulsion = 27426.028015 eV Total energy + Delta-G solvation = -3971.586792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93520 -39.64070 -37.49825 -36.37930 -34.91194 -34.49912 -32.28432 -30.75377 -30.46705 -29.53740 -28.37006 -26.71392 -24.86421 -24.52639 -24.19043 -22.79091 -21.78857 -20.52835 -19.78687 -18.83878 -18.21293 -17.10605 -16.83978 -16.55727 -15.90898 -15.56707 -15.24330 -14.74060 -14.54072 -14.41509 -14.30679 -13.99389 -13.70684 -13.40742 -13.29421 -13.19524 -13.03650 -12.62556 -12.30005 -12.14554 -11.96029 -11.91637 -11.69481 -11.57259 -11.42955 -11.31882 -11.14030 -11.08829 -11.01918 -10.98453 -10.76874 -10.35636 -10.11137 -9.95221 -9.70731 -9.63646 -9.40013 -9.32580 -8.56545 -8.51430 -8.01832 -6.76118 -5.57468 -2.99153 2.74389 2.99694 3.22593 3.43920 3.48608 3.52067 3.53239 4.48399 4.54640 4.55208 4.57816 4.67368 4.73993 4.85399 5.02045 5.06419 5.10277 5.22703 5.25144 5.31738 5.35352 5.48310 5.55147 5.55693 5.59157 5.64572 5.68148 5.71491 5.73988 5.76908 5.80445 5.86426 5.99434 6.03411 6.09407 6.18383 6.31980 6.40159 6.45994 6.60579 6.69839 6.78344 6.96572 7.56854 7.62952 7.70808 7.99265 8.11894 8.38326 8.42355 8.80194 9.28867 9.90590 10.53353 11.47125 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.003914 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.135956 B = 7152.344478 C = 8600.174881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 H 0.105 0.895 4 C 0.524 3.476 5 O -0.506 6.506 6 N -0.609 5.609 7 C 0.101 3.899 8 C -0.122 4.122 9 C -0.110 4.110 10 H 0.087 0.913 11 C 0.147 3.853 12 N -0.604 5.604 13 C -0.230 4.230 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.914 5.914 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.171 3.829 22 C 0.117 3.883 23 H 0.079 0.921 24 N -0.591 5.591 25 C 0.113 3.887 26 C -0.132 4.132 27 C -0.125 4.125 28 C -0.130 4.130 29 C 0.524 3.476 30 O -0.533 6.533 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.251 0.749 41 H 0.019 0.981 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.972 6.138 15.118 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 H 0.123 0.877 4 C 0.310 3.690 5 O -0.379 6.379 6 N -0.345 5.345 7 C -0.022 4.022 8 C -0.160 4.160 9 C -0.129 4.129 10 H 0.105 0.895 11 C 0.020 3.980 12 N -0.332 5.332 13 C -0.358 4.358 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.561 5.561 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.046 3.954 22 C 0.014 3.986 23 H 0.097 0.903 24 N -0.325 5.325 25 C -0.010 4.010 26 C -0.170 4.170 27 C -0.163 4.163 28 C -0.170 4.170 29 C 0.313 3.687 30 O -0.409 6.409 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.112 0.888 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.676 5.196 14.902 20.242 hybrid contribution 0.987 0.159 -0.393 1.074 sum -11.690 5.356 14.509 19.387 Atomic orbital electron populations 1.22283 0.92907 1.05073 1.02517 1.20859 0.95990 0.96204 0.84690 0.87727 1.20114 0.80786 0.85008 0.83130 1.90734 1.36640 1.25269 1.85282 1.48436 1.51391 1.29352 1.05338 1.22422 0.94414 0.87882 0.97517 1.22832 1.02164 0.97093 0.93870 1.22854 0.98725 0.95222 0.96097 0.89505 1.20962 0.86028 0.97208 0.93761 1.44431 1.03321 1.77061 1.08340 1.19080 0.83893 1.38311 0.94553 0.90389 1.24839 0.97979 1.01551 0.96088 1.69971 1.27757 1.50189 1.08219 0.86051 0.84004 0.77295 0.78446 1.20513 1.21834 1.21748 1.21758 0.87453 1.01446 0.84734 1.22901 0.98988 0.96208 0.80553 0.90342 1.47034 1.51707 1.11667 1.22044 1.21449 0.95366 0.95078 0.89126 1.21858 1.02824 0.96238 0.96072 1.21703 0.98537 0.95037 1.01024 1.21647 0.99799 1.00170 0.95370 1.19942 0.79630 0.81084 0.88043 1.90686 1.39257 1.68444 1.42544 0.90717 0.89685 0.92068 0.91657 0.91352 0.89943 0.90466 0.96015 0.95721 0.93803 0.96255 0.88927 0.91385 0.90773 0.89775 0.91061 0.90668 0.90734 0.88783 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 8.89 37.16 0.33 -1.72 16 2 C 0.13 1.86 2.37 -69.08 -0.16 1.70 16 3 H 0.10 1.23 7.50 -51.93 -0.39 0.84 16 4 C 0.52 10.27 6.25 -10.99 -0.07 10.21 16 5 O -0.51 -12.46 14.50 -16.36 -0.24 -12.70 16 6 N -0.61 -11.19 2.85 -161.55 -0.46 -11.65 16 7 C 0.10 1.35 5.13 -2.43 -0.01 1.33 16 8 C -0.12 -1.72 6.26 -24.64 -0.15 -1.88 16 9 C -0.11 -1.90 3.91 -88.33 -0.35 -2.25 16 10 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 11 C 0.15 3.08 6.66 -3.86 -0.03 3.06 16 12 N -0.60 -16.09 3.40 -171.49 -0.58 -16.67 16 13 C -0.23 -6.64 10.25 -15.06 -0.15 -6.79 16 14 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 15 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 16 N -0.91 -28.43 10.16 55.49 0.56 -27.87 16 17 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 C 0.17 4.52 4.79 -2.90 -0.01 4.51 16 22 C 0.12 2.48 3.84 -65.76 -0.25 2.23 16 23 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 24 N -0.59 -8.12 2.61 -168.69 -0.44 -8.56 16 25 C 0.11 1.11 6.25 -4.48 -0.03 1.08 16 26 C -0.13 -0.98 6.02 -26.59 -0.16 -1.14 16 27 C -0.13 -1.11 6.05 -26.42 -0.16 -1.27 16 28 C -0.13 -1.46 6.03 -28.01 -0.17 -1.63 16 29 C 0.52 8.16 6.19 -11.87 -0.07 8.08 16 30 O -0.53 -10.52 12.76 -16.36 -0.21 -10.73 16 31 H 0.07 0.79 4.96 -51.93 -0.26 0.53 16 32 H 0.08 1.28 6.00 -51.93 -0.31 0.97 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.74 7.03 -51.92 -0.37 0.37 16 35 H 0.07 0.76 7.37 -51.93 -0.38 0.37 16 36 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 40 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 42 H 0.09 2.89 6.29 -51.93 -0.33 2.57 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 47 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -38.24 376.09 -10.56 -48.80 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.29 Total: 0.70 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -1.55 Total: 15.18 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.92 Total: -64.75 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.45 Total: -23.43 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.24 -10.56 -48.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076601042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.518 kcal (2) G-P(sol) polarization free energy of solvation -38.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds