Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47551 * 2 1 4 4 C 1.50702 * 109.46952 * 239.99887 * 2 1 3 5 5 O 1.21281 * 120.00094 * 239.99565 * 4 2 1 6 6 N 1.34773 * 119.99840 * 60.00495 * 4 2 1 7 7 C 1.47347 * 125.53274 * 359.69043 * 6 4 2 8 8 C 1.55164 * 104.78515 * 156.47226 * 7 6 4 9 9 C 1.54805 * 101.39363 * 37.53509 * 8 7 6 10 10 H 1.09002 * 113.15189 * 85.44260 * 9 8 7 11 11 C 1.53266 * 109.74401 * 212.11788 * 9 8 7 12 12 N 1.46586 * 108.15593 * 95.76843 * 11 9 8 13 13 C 1.36944 * 125.30797 * 177.88801 * 12 11 9 14 14 H 1.08005 * 119.99328 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00470 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99744 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00264 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47188 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47285 * 120.00402 * 17 15 13 20 20 H 1.48503 * 109.47117 * 240.00169 * 17 15 13 21 21 C 1.47549 * 109.62603 * 358.29001 * 12 11 9 22 22 C 1.47223 * 125.52749 * 179.97438 * 6 4 2 23 23 H 1.09001 * 112.28632 * 56.22113 * 22 6 4 24 24 N 1.46504 * 109.46875 * 120.00410 * 2 1 3 25 25 C 1.45758 * 117.94039 * 240.01881 * 24 2 1 26 26 C 1.52921 * 110.48415 * 160.92488 * 25 24 2 27 27 C 1.53345 * 108.67449 * 50.75535 * 26 25 24 28 28 C 1.53256 * 108.26183 * 292.28357 * 27 26 25 29 29 C 1.33350 * 117.95070 * 60.00024 * 24 2 1 30 30 O 1.21283 * 118.24281 * 2.21942 * 29 24 2 31 31 H 1.09004 * 109.47330 * 59.99943 * 1 2 3 32 32 H 1.09003 * 109.46937 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46953 * 299.99702 * 1 2 3 34 34 H 1.09008 * 110.35189 * 275.42231 * 7 6 4 35 35 H 1.08999 * 110.35645 * 37.71055 * 7 6 4 36 36 H 1.08997 * 111.21342 * 279.45637 * 8 7 6 37 37 H 1.08990 * 110.95173 * 155.50601 * 8 7 6 38 38 H 1.08997 * 109.73627 * 215.44759 * 11 9 8 39 39 H 1.08993 * 109.74081 * 336.07975 * 11 9 8 40 40 H 0.97007 * 120.00274 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.81178 * 258.08443 * 21 12 11 42 42 H 1.09001 * 110.47849 * 136.50279 * 21 12 11 43 43 H 1.08997 * 109.30094 * 281.23434 * 25 24 2 44 44 H 1.08994 * 109.30118 * 40.81982 * 25 24 2 45 45 H 1.09001 * 109.60454 * 170.50740 * 26 25 24 46 46 H 1.08995 * 109.60430 * 290.99720 * 26 25 24 47 47 H 1.09002 * 109.67647 * 52.19675 * 27 26 25 48 48 H 1.09002 * 109.67893 * 172.69937 * 27 26 25 49 49 H 1.08999 * 109.60030 * 289.08971 * 28 27 26 50 50 H 1.09003 * 109.30020 * 169.29004 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8659 0.9282 -2.7305 8 6 1.2795 1.3850 -4.1545 9 6 1.5070 0.0250 -4.8580 10 1 0.5926 -0.4036 -5.2683 11 6 2.6147 0.1641 -5.9082 12 7 3.8774 -0.2650 -5.2997 13 6 5.0861 -0.3214 -5.9411 14 1 5.1599 -0.0357 -6.9801 15 6 6.2163 -0.7456 -5.2559 16 7 6.1262 -1.0941 -3.9899 17 14 7.8650 -0.8218 -6.1306 18 1 7.6990 -0.3814 -7.5390 19 1 8.8320 0.0712 -5.4429 20 1 8.3748 -2.2163 -6.1053 21 6 3.6473 -0.6373 -3.8907 22 6 2.1287 -0.8459 -3.7329 23 1 1.8441 -1.8949 -3.8139 24 7 2.0183 -0.6907 1.1962 25 6 2.8526 0.0604 2.1258 26 6 2.8763 -0.6213 3.4944 27 6 3.2232 -2.1023 3.2993 28 6 2.0556 -2.7770 2.5711 29 6 1.6713 -1.9670 1.3663 30 8 1.0055 -2.5006 0.5044 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.1890 0.6545 -2.7090 35 1 1.0687 1.7169 -2.0060 36 1 2.1984 1.9707 -4.1295 37 1 0.4754 1.9434 -4.6336 38 1 2.3878 -0.4659 -6.7682 39 1 2.6933 1.2041 -6.2247 40 1 6.9161 -1.3902 -3.5109 41 1 3.9813 0.1680 -3.2365 42 1 4.1760 -1.5592 -3.6486 43 1 3.8680 0.1169 1.7338 44 1 2.4523 1.0682 2.2356 45 1 3.6297 -0.1494 4.1251 46 1 1.8964 -0.5340 3.9636 47 1 4.1324 -2.1910 2.7047 48 1 3.3718 -2.5754 4.2700 49 1 1.2010 -2.8542 3.2432 50 1 2.3572 -3.7756 2.2548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076601042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = -48.731284 kcal Electronic energy + Delta-G solvation = -31398.761802 eV Core-core repulsion = 27426.028015 eV Total energy + Delta-G solvation = -3972.733787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14520 -41.04296 -39.05350 -37.42527 -36.65858 -35.62135 -34.12014 -32.30462 -31.69937 -30.50767 -30.05082 -28.38087 -26.50625 -25.88546 -25.23566 -23.96188 -22.87007 -22.31849 -21.18740 -20.29519 -19.36105 -18.94024 -18.23120 -17.84979 -17.19267 -17.06627 -16.51036 -16.29468 -15.96211 -15.70960 -15.42594 -15.20407 -15.08266 -14.77529 -14.54105 -14.41759 -14.14770 -14.11963 -13.83667 -13.61571 -13.31064 -13.17431 -13.06694 -13.01642 -12.88474 -12.78191 -12.53524 -12.47867 -12.11511 -12.08834 -11.89649 -11.85825 -11.82544 -11.68642 -11.50679 -11.42207 -10.82155 -10.76854 -10.49452 -9.70959 -9.54383 -8.95161 -7.82439 -5.27788 1.39648 1.42695 1.53286 1.57576 1.77663 1.96312 2.21624 2.45832 3.28313 3.34278 3.59927 3.61761 3.71498 3.83261 3.83517 3.88622 3.94071 3.98663 4.01267 4.14034 4.31598 4.31910 4.44754 4.47832 4.51802 4.52848 4.59020 4.67705 4.73900 4.78574 4.85443 4.88770 4.91292 4.93345 5.05988 5.09524 5.10178 5.17797 5.22901 5.24479 5.35190 5.43516 5.46497 5.47627 5.60169 5.77434 6.18907 6.52093 6.67455 7.02437 7.22647 7.37703 7.73857 8.35875 9.20598 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.003914 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.135956 B = 7152.344478 C = 8600.174881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.137 0.863 4 C 0.508 3.492 5 O -0.576 6.576 6 N -0.612 5.612 7 C 0.096 3.904 8 C -0.111 4.111 9 C -0.094 4.094 10 H 0.124 0.876 11 C 0.138 3.862 12 N -0.627 5.627 13 C -0.241 4.241 14 H 0.090 0.910 15 C -0.073 4.073 16 N -0.952 5.952 17 Si 0.983 3.017 18 H -0.257 1.257 19 H -0.291 1.291 20 H -0.296 1.296 21 C 0.195 3.805 22 C 0.118 3.882 23 H 0.050 0.950 24 N -0.592 5.592 25 C 0.102 3.898 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.128 4.128 29 C 0.509 3.491 30 O -0.586 6.586 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.027 0.973 39 H 0.042 0.958 40 H 0.241 0.759 41 H -0.018 1.018 42 H 0.029 0.971 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.104 0.896 49 H 0.123 0.877 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.421 9.457 15.869 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 H 0.155 0.845 4 C 0.296 3.704 5 O -0.454 6.454 6 N -0.346 5.346 7 C -0.025 4.025 8 C -0.149 4.149 9 C -0.113 4.113 10 H 0.142 0.858 11 C 0.014 3.986 12 N -0.354 5.354 13 C -0.370 4.370 14 H 0.108 0.892 15 C -0.266 4.266 16 N -0.602 5.602 17 Si 0.811 3.189 18 H -0.181 1.181 19 H -0.218 1.218 20 H -0.223 1.223 21 C 0.069 3.931 22 C 0.013 3.987 23 H 0.068 0.932 24 N -0.324 5.324 25 C -0.020 4.020 26 C -0.160 4.160 27 C -0.160 4.160 28 C -0.168 4.168 29 C 0.300 3.700 30 O -0.467 6.467 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.146 0.854 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.000 1.000 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.122 0.878 49 H 0.141 0.859 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.169 8.602 15.636 23.422 hybrid contribution 1.770 -0.896 -0.694 2.102 sum -13.399 7.705 14.943 21.499 Atomic orbital electron populations 1.22210 0.90575 1.03621 1.05084 1.21054 0.97673 0.96620 0.82238 0.84533 1.21355 0.79618 0.84513 0.84900 1.90697 1.39707 1.28492 1.86456 1.48590 1.51499 1.30532 1.04014 1.22849 0.95205 0.86583 0.97890 1.22853 1.02867 0.95021 0.94155 1.22908 0.98375 0.96635 0.93352 0.85767 1.21255 0.84768 0.97789 0.94830 1.44761 1.04797 1.77269 1.08596 1.19577 0.85070 1.37200 0.95164 0.89208 1.25811 1.02082 1.01859 0.96813 1.70321 1.27995 1.51729 1.10124 0.84936 0.78965 0.76693 0.78311 1.18083 1.21780 1.22330 1.21178 0.90659 0.96825 0.84423 1.22524 0.95706 0.96201 0.84258 0.93228 1.47259 1.51391 1.11565 1.22197 1.21793 0.93876 0.96755 0.89554 1.21877 1.04778 0.94507 0.94850 1.21714 0.96138 0.96676 1.01496 1.21694 1.01874 0.98742 0.94450 1.20759 0.78872 0.81789 0.88627 1.90654 1.41771 1.69642 1.44609 0.88699 0.93090 0.88786 0.88140 0.88160 0.92470 0.85375 0.95486 0.94001 0.94935 0.99973 0.95245 0.93503 0.87239 0.87175 0.89029 0.93426 0.87770 0.85938 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.89 71.98 0.64 -2.75 16 2 C 0.13 3.63 2.37 44.24 0.10 3.74 16 3 H 0.14 2.82 7.50 -2.39 -0.02 2.80 16 4 C 0.51 20.76 6.25 87.66 0.55 21.31 16 5 O -0.58 -31.00 14.50 17.93 0.26 -30.74 16 6 N -0.61 -22.65 2.85 -783.43 -2.23 -24.88 16 7 C 0.10 2.20 5.13 86.96 0.45 2.64 16 8 C -0.11 -2.73 6.26 31.95 0.20 -2.53 16 9 C -0.09 -3.07 3.91 -9.31 -0.04 -3.11 16 10 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 11 C 0.14 5.70 6.66 86.45 0.58 6.27 16 12 N -0.63 -34.61 3.40 -696.48 -2.37 -36.98 16 13 C -0.24 -14.32 10.25 84.03 0.86 -13.46 16 14 H 0.09 4.98 7.83 -2.91 -0.02 4.96 16 15 C -0.07 -4.49 5.48 84.86 0.47 -4.03 16 16 N -0.95 -63.55 10.16 21.65 0.22 -63.33 16 17 Si 0.98 48.62 29.55 68.60 2.03 50.65 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 21 C 0.20 11.08 4.79 86.55 0.41 11.49 16 22 C 0.12 5.22 3.84 46.00 0.18 5.40 16 23 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 24 N -0.59 -16.12 2.61 -806.81 -2.10 -18.22 16 25 C 0.10 1.84 6.25 86.49 0.54 2.38 16 26 C -0.12 -1.48 6.02 30.68 0.18 -1.30 16 27 C -0.12 -2.07 6.05 30.80 0.19 -1.88 16 28 C -0.13 -2.93 6.03 29.77 0.18 -2.75 16 29 C 0.51 16.44 6.19 87.71 0.54 16.99 16 30 O -0.59 -24.69 12.76 17.92 0.23 -24.47 16 31 H 0.09 1.60 4.96 -2.38 -0.01 1.58 16 32 H 0.05 1.51 6.00 -2.39 -0.01 1.49 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.71 7.03 -2.38 -0.02 1.70 16 35 H 0.10 1.73 7.37 -2.39 -0.02 1.71 16 36 H 0.06 1.73 7.88 -2.39 -0.02 1.71 16 37 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.04 1.61 7.74 -2.39 -0.02 1.59 16 40 H 0.24 15.76 8.31 -92.70 -0.77 14.99 16 41 H -0.02 -1.11 7.94 -2.39 -0.02 -1.12 16 42 H 0.03 2.02 6.29 -2.39 -0.02 2.01 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.11 1.21 8.04 -2.39 -0.02 1.19 16 45 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 47 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 48 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -97.52 376.09 2.99 -94.53 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.93 Total: 15.01 kcal Atomic # 6 Polarization: 32.39 SS G_CDS: 6.03 Total: 38.42 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -6.48 Total: -143.41 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: 0.49 Total: -55.20 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -97.52 2.99 -94.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076601042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.801 kcal (2) G-P(sol) polarization free energy of solvation -97.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds