Wall clock time and date at job start Tue Mar 31 2020 18:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46861 * 2 1 4 4 C 1.50698 * 109.46974 * 119.99929 * 2 1 3 5 5 O 1.21289 * 119.99573 * 101.13086 * 4 2 1 6 6 N 1.34767 * 120.00216 * 281.12115 * 4 2 1 7 7 C 1.47347 * 125.53238 * 4.49914 * 6 4 2 8 8 C 1.55165 * 104.78528 * 156.46171 * 7 6 4 9 9 C 1.54800 * 101.39403 * 37.53980 * 8 7 6 10 10 H 1.09000 * 112.64424 * 85.16448 * 9 8 7 11 11 C 1.53264 * 110.31130 * 211.90068 * 9 8 7 12 12 N 1.46581 * 108.15948 * 95.99214 * 11 9 8 13 13 C 1.36942 * 125.30302 * 177.88919 * 12 11 9 14 14 H 1.07996 * 120.00271 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99674 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00486 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99750 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47237 * 59.99344 * 17 15 13 19 19 H 1.48506 * 109.46888 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46980 * 299.99392 * 17 15 13 21 21 C 1.48216 * 109.53160 * 357.70249 * 12 11 9 22 22 C 1.47219 * 125.53004 * 184.79724 * 6 4 2 23 23 H 1.08997 * 112.28576 * 56.23164 * 22 6 4 24 24 N 1.46506 * 109.46819 * 240.00039 * 2 1 3 25 25 C 1.45757 * 117.94259 * 120.00254 * 24 2 1 26 26 C 1.52920 * 110.48702 * 160.92561 * 25 24 2 27 27 C 1.53346 * 108.67536 * 50.74873 * 26 25 24 28 28 C 1.53074 * 108.42350 * 292.47287 * 27 26 25 29 29 C 1.33342 * 117.94660 * 300.02030 * 24 2 1 30 30 O 1.21287 * 118.24951 * 2.24934 * 29 24 2 31 31 H 1.08994 * 109.47072 * 187.12510 * 1 2 3 32 32 H 1.09002 * 109.47027 * 307.12908 * 1 2 3 33 33 H 1.09000 * 109.47053 * 67.11747 * 1 2 3 34 34 H 1.09003 * 110.35366 * 275.41625 * 7 6 4 35 35 H 1.09006 * 110.35512 * 37.70240 * 7 6 4 36 36 H 1.08997 * 111.22117 * 279.45265 * 8 7 6 37 37 H 1.09002 * 110.91405 * 155.49139 * 8 7 6 38 38 H 1.09004 * 109.73709 * 215.68445 * 11 9 8 39 39 H 1.09000 * 109.73635 * 336.31095 * 11 9 8 40 40 H 0.96993 * 120.00675 * 180.02562 * 16 15 13 41 41 H 1.08993 * 110.73410 * 258.71449 * 21 12 11 42 42 H 1.08996 * 109.89251 * 136.90598 * 21 12 11 43 43 H 1.09003 * 109.30442 * 40.61082 * 25 24 2 44 44 H 1.08999 * 109.30303 * 281.23104 * 25 24 2 45 45 H 1.09005 * 109.59817 * 290.99828 * 26 25 24 46 46 H 1.08990 * 109.60730 * 170.50705 * 26 25 24 47 47 H 1.08996 * 109.67383 * 52.20462 * 27 26 25 48 48 H 1.08995 * 109.67449 * 172.74154 * 27 26 25 49 49 H 1.09003 * 109.39948 * 169.02990 * 28 27 26 50 50 H 1.08998 * 109.40478 * 288.76862 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4256 -1.8550 1.1517 6 7 2.0447 -0.0738 2.4183 7 6 1.5118 1.2763 2.6718 8 6 1.2046 1.3016 4.1925 9 6 2.3874 0.4779 4.7572 10 1 3.2776 1.0836 4.9267 11 6 1.9508 -0.2902 6.0096 12 7 1.5823 -1.6503 5.6060 13 6 1.1794 -2.6461 6.4554 14 1 1.1135 -2.4569 7.5166 15 6 0.8558 -3.8988 5.9523 16 7 0.9356 -4.1293 4.6589 17 14 0.3056 -5.2569 7.1108 18 1 -0.9231 -4.8293 7.8267 19 1 0.0204 -6.4878 6.3305 20 1 1.3818 -5.5332 8.0961 21 6 1.7081 -1.7820 4.1350 22 6 2.5984 -0.6121 3.6717 23 1 3.6444 -0.9015 3.5708 24 7 2.0183 -0.6906 -1.1962 25 6 2.8530 0.0604 -2.1256 26 6 3.6412 -0.8914 -3.0263 27 6 2.6684 -1.9061 -3.6391 28 6 2.1401 -2.8067 -2.5197 29 6 1.6709 -1.9667 -1.3666 30 8 0.9369 -2.4762 -0.5466 31 1 -0.3633 -1.0197 0.1275 32 1 -0.3633 0.6203 0.8194 33 1 -0.3633 0.3996 -0.9468 34 1 2.2567 2.0313 2.4203 35 1 0.5989 1.4375 2.0984 36 1 0.2522 0.8185 4.4108 37 1 1.2205 2.3219 4.5758 38 1 2.7736 -0.3283 6.7235 39 1 1.0923 0.2042 6.4640 40 1 0.7092 -5.0044 4.3073 41 1 0.7309 -1.7169 3.6568 42 1 2.1834 -2.7310 3.8870 43 1 3.5487 0.6829 -1.5629 44 1 2.2207 0.6991 -2.7424 45 1 4.3924 -1.4158 -2.4355 46 1 4.1272 -0.3250 -3.8205 47 1 1.8378 -1.3801 -4.1097 48 1 3.1886 -2.5108 -4.3819 49 1 1.3079 -3.4017 -2.8961 50 1 2.9359 -3.4714 -2.1837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076601044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:54 Heat of formation + Delta-G solvation = -20.280064 kcal Electronic energy + Delta-G solvation = -31447.467450 eV Core-core repulsion = 27475.967401 eV Total energy + Delta-G solvation = -3971.500049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.88623 -39.60300 -37.47819 -36.32083 -34.80237 -34.48959 -32.20560 -30.72864 -30.45167 -29.49324 -28.40553 -26.70551 -24.76180 -24.47858 -24.07913 -22.81802 -21.94661 -20.45898 -19.65126 -18.73434 -18.15227 -17.24319 -16.80012 -16.56036 -15.74450 -15.62977 -15.37428 -14.60294 -14.49557 -14.32025 -14.11225 -13.92235 -13.79482 -13.52948 -13.30340 -13.17424 -12.80967 -12.61574 -12.32900 -12.06233 -11.98078 -11.86600 -11.75012 -11.55586 -11.37874 -11.16856 -11.14989 -11.12096 -11.01185 -10.92902 -10.69172 -10.37370 -10.09586 -9.93854 -9.66082 -9.59060 -9.44373 -9.18771 -8.49512 -8.43863 -8.01353 -6.70765 -5.49165 -2.92586 2.77955 3.06779 3.17998 3.49304 3.52486 3.56071 3.58123 4.49668 4.52183 4.53368 4.60051 4.67650 4.73799 4.86546 5.00166 5.09422 5.11392 5.20855 5.26340 5.32711 5.34032 5.49153 5.52347 5.53235 5.64674 5.67329 5.69029 5.71144 5.74197 5.79198 5.87241 5.90000 5.99059 6.00299 6.09846 6.29827 6.34475 6.42259 6.52461 6.62005 6.71871 6.79013 6.97656 7.62211 7.69634 7.74847 8.05144 8.13142 8.48406 8.51718 8.80673 9.34116 9.96476 10.59500 11.54452 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003868 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.695918 B = 7237.548268 C = 8614.781173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.098 0.902 4 C 0.515 3.485 5 O -0.496 6.496 6 N -0.612 5.612 7 C 0.098 3.902 8 C -0.121 4.121 9 C -0.109 4.109 10 H 0.085 0.915 11 C 0.148 3.852 12 N -0.605 5.605 13 C -0.236 4.236 14 H 0.076 0.924 15 C -0.006 4.006 16 N -0.909 5.909 17 Si 0.911 3.089 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.171 3.829 22 C 0.116 3.884 23 H 0.077 0.923 24 N -0.600 5.600 25 C 0.117 3.883 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.132 4.132 29 C 0.518 3.482 30 O -0.508 6.508 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.254 0.746 41 H 0.023 0.977 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 15.524 -17.161 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.116 0.884 4 C 0.300 3.700 5 O -0.368 6.368 6 N -0.348 5.348 7 C -0.025 4.025 8 C -0.159 4.159 9 C -0.128 4.128 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.332 5.332 13 C -0.364 4.364 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.556 5.556 17 Si 0.741 3.259 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.045 3.955 22 C 0.013 3.987 23 H 0.095 0.905 24 N -0.336 5.336 25 C -0.006 4.006 26 C -0.173 4.173 27 C -0.159 4.159 28 C -0.172 4.172 29 C 0.306 3.694 30 O -0.381 6.381 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.149 14.282 -16.917 22.525 hybrid contribution -0.215 -0.482 0.601 0.800 sum 3.935 13.800 -16.316 21.729 Atomic orbital electron populations 1.22171 0.92508 1.05566 1.01883 1.20865 0.96476 0.95588 0.84436 0.88357 1.20275 0.79552 0.86856 0.83298 1.90784 1.45562 1.15908 1.84498 1.48513 1.60505 1.16994 1.08829 1.22410 0.98096 0.84632 0.97410 1.22807 0.99620 1.00112 0.93344 1.22843 0.97605 0.96182 0.96170 0.89693 1.20928 0.96782 0.86927 0.93256 1.44574 1.79157 1.06423 1.03081 1.18952 1.38639 0.89527 0.89282 0.90570 1.24855 1.01702 0.97720 0.96011 1.69924 1.53449 1.22062 1.10170 0.86232 0.78410 0.81707 0.79559 1.21271 1.21609 1.21183 1.21907 0.95637 0.95519 0.82388 1.22917 0.98219 0.96233 0.81370 0.90509 1.47146 1.52243 1.11856 1.22356 1.21368 0.93345 0.94245 0.91602 1.21871 0.98386 0.97893 0.99197 1.21647 0.99220 0.97537 0.97526 1.21643 1.03313 0.98346 0.93885 1.19945 0.81113 0.81241 0.87140 1.90791 1.35313 1.69258 1.42787 0.89090 0.91389 0.91986 0.92033 0.91055 0.89942 0.90494 0.96037 0.95929 0.93541 0.95904 0.88744 0.91103 0.91876 0.90752 0.89943 0.91277 0.90767 0.88545 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.84 37.16 0.33 -1.94 16 2 C 0.13 1.89 2.35 -69.08 -0.16 1.73 16 3 H 0.10 1.03 7.44 -51.93 -0.39 0.64 16 4 C 0.51 9.94 6.57 -10.99 -0.07 9.87 16 5 O -0.50 -12.13 13.65 -18.19 -0.25 -12.37 16 6 N -0.61 -11.05 2.85 -161.52 -0.46 -11.51 16 7 C 0.10 1.29 6.40 -2.43 -0.02 1.27 16 8 C -0.12 -1.73 6.29 -24.64 -0.15 -1.89 16 9 C -0.11 -1.87 3.87 -88.33 -0.34 -2.21 16 10 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 11 C 0.15 3.13 6.68 -3.86 -0.03 3.10 16 12 N -0.60 -16.40 3.41 -170.91 -0.58 -16.98 16 13 C -0.24 -6.94 10.25 -15.06 -0.15 -7.09 16 14 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 15 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 16 N -0.91 -29.24 10.16 55.49 0.56 -28.67 16 17 Si 0.91 23.40 29.55 -169.99 -5.02 18.37 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C 0.17 4.60 4.77 -2.50 -0.01 4.59 16 22 C 0.12 2.43 3.86 -65.73 -0.25 2.18 16 23 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 24 N -0.60 -8.00 2.73 -168.69 -0.46 -8.46 16 25 C 0.12 1.00 6.25 -4.48 -0.03 0.97 16 26 C -0.14 -1.00 6.02 -26.59 -0.16 -1.16 16 27 C -0.12 -0.94 6.03 -26.51 -0.16 -1.10 16 28 C -0.13 -1.55 6.03 -28.10 -0.17 -1.72 16 29 C 0.52 8.35 6.16 -11.88 -0.07 8.28 16 30 O -0.51 -11.01 12.34 -18.19 -0.22 -11.23 16 31 H 0.09 1.67 6.06 -51.93 -0.31 1.36 16 32 H 0.07 0.85 6.03 -51.93 -0.31 0.54 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.82 5.67 -51.93 -0.29 0.53 16 36 H 0.08 1.40 7.92 -51.93 -0.41 0.98 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 40 H 0.25 8.04 8.31 -40.82 -0.34 7.70 16 41 H 0.02 0.69 7.94 -51.93 -0.41 0.28 16 42 H 0.09 3.01 6.25 -51.93 -0.32 2.69 16 43 H 0.07 0.54 8.03 -51.93 -0.42 0.12 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -39.30 376.93 -10.62 -49.92 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.32 Total: 0.65 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -1.55 Total: 14.60 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.94 Total: -65.62 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.47 Total: -23.61 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.30 -10.62 -49.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076601044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.643 kcal (2) G-P(sol) polarization free energy of solvation -39.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds