Wall clock time and date at job start Tue Mar 31 2020 18:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46861 * 2 1 4 4 C 1.50698 * 109.46974 * 119.99929 * 2 1 3 5 5 O 1.21289 * 119.99573 * 101.13086 * 4 2 1 6 6 N 1.34767 * 120.00216 * 281.12115 * 4 2 1 7 7 C 1.47347 * 125.53238 * 4.49914 * 6 4 2 8 8 C 1.55165 * 104.78528 * 156.46171 * 7 6 4 9 9 C 1.54800 * 101.39403 * 37.53980 * 8 7 6 10 10 H 1.09000 * 112.64424 * 85.16448 * 9 8 7 11 11 C 1.53264 * 110.31130 * 211.90068 * 9 8 7 12 12 N 1.46581 * 108.15948 * 95.99214 * 11 9 8 13 13 C 1.36942 * 125.30302 * 177.88919 * 12 11 9 14 14 H 1.07996 * 120.00271 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99674 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00486 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99750 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47237 * 59.99344 * 17 15 13 19 19 H 1.48506 * 109.46888 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46980 * 299.99392 * 17 15 13 21 21 C 1.48216 * 109.53160 * 357.70249 * 12 11 9 22 22 C 1.47219 * 125.53004 * 184.79724 * 6 4 2 23 23 H 1.08997 * 112.28576 * 56.23164 * 22 6 4 24 24 N 1.46506 * 109.46819 * 240.00039 * 2 1 3 25 25 C 1.45757 * 117.94259 * 120.00254 * 24 2 1 26 26 C 1.52920 * 110.48702 * 160.92561 * 25 24 2 27 27 C 1.53346 * 108.67536 * 50.74873 * 26 25 24 28 28 C 1.53074 * 108.42350 * 292.47287 * 27 26 25 29 29 C 1.33342 * 117.94660 * 300.02030 * 24 2 1 30 30 O 1.21287 * 118.24951 * 2.24934 * 29 24 2 31 31 H 1.08994 * 109.47072 * 187.12510 * 1 2 3 32 32 H 1.09002 * 109.47027 * 307.12908 * 1 2 3 33 33 H 1.09000 * 109.47053 * 67.11747 * 1 2 3 34 34 H 1.09003 * 110.35366 * 275.41625 * 7 6 4 35 35 H 1.09006 * 110.35512 * 37.70240 * 7 6 4 36 36 H 1.08997 * 111.22117 * 279.45265 * 8 7 6 37 37 H 1.09002 * 110.91405 * 155.49139 * 8 7 6 38 38 H 1.09004 * 109.73709 * 215.68445 * 11 9 8 39 39 H 1.09000 * 109.73635 * 336.31095 * 11 9 8 40 40 H 0.96993 * 120.00675 * 180.02562 * 16 15 13 41 41 H 1.08993 * 110.73410 * 258.71449 * 21 12 11 42 42 H 1.08996 * 109.89251 * 136.90598 * 21 12 11 43 43 H 1.09003 * 109.30442 * 40.61082 * 25 24 2 44 44 H 1.08999 * 109.30303 * 281.23104 * 25 24 2 45 45 H 1.09005 * 109.59817 * 290.99828 * 26 25 24 46 46 H 1.08990 * 109.60730 * 170.50705 * 26 25 24 47 47 H 1.08996 * 109.67383 * 52.20462 * 27 26 25 48 48 H 1.08995 * 109.67449 * 172.74154 * 27 26 25 49 49 H 1.09003 * 109.39948 * 169.02990 * 28 27 26 50 50 H 1.08998 * 109.40478 * 288.76862 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4256 -1.8550 1.1517 6 7 2.0447 -0.0738 2.4183 7 6 1.5118 1.2763 2.6718 8 6 1.2046 1.3016 4.1925 9 6 2.3874 0.4779 4.7572 10 1 3.2776 1.0836 4.9267 11 6 1.9508 -0.2902 6.0096 12 7 1.5823 -1.6503 5.6060 13 6 1.1794 -2.6461 6.4554 14 1 1.1135 -2.4569 7.5166 15 6 0.8558 -3.8988 5.9523 16 7 0.9356 -4.1293 4.6589 17 14 0.3056 -5.2569 7.1108 18 1 -0.9231 -4.8293 7.8267 19 1 0.0204 -6.4878 6.3305 20 1 1.3818 -5.5332 8.0961 21 6 1.7081 -1.7820 4.1350 22 6 2.5984 -0.6121 3.6717 23 1 3.6444 -0.9015 3.5708 24 7 2.0183 -0.6906 -1.1962 25 6 2.8530 0.0604 -2.1256 26 6 3.6412 -0.8914 -3.0263 27 6 2.6684 -1.9061 -3.6391 28 6 2.1401 -2.8067 -2.5197 29 6 1.6709 -1.9667 -1.3666 30 8 0.9369 -2.4762 -0.5466 31 1 -0.3633 -1.0197 0.1275 32 1 -0.3633 0.6203 0.8194 33 1 -0.3633 0.3996 -0.9468 34 1 2.2567 2.0313 2.4203 35 1 0.5989 1.4375 2.0984 36 1 0.2522 0.8185 4.4108 37 1 1.2205 2.3219 4.5758 38 1 2.7736 -0.3283 6.7235 39 1 1.0923 0.2042 6.4640 40 1 0.7092 -5.0044 4.3073 41 1 0.7309 -1.7169 3.6568 42 1 2.1834 -2.7310 3.8870 43 1 3.5487 0.6829 -1.5629 44 1 2.2207 0.6991 -2.7424 45 1 4.3924 -1.4158 -2.4355 46 1 4.1272 -0.3250 -3.8205 47 1 1.8378 -1.3801 -4.1097 48 1 3.1886 -2.5108 -4.3819 49 1 1.3079 -3.4017 -2.8961 50 1 2.9359 -3.4714 -2.1837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076601044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:53 Heat of formation + Delta-G solvation = -48.461262 kcal Electronic energy + Delta-G solvation = -31448.689479 eV Core-core repulsion = 27475.967401 eV Total energy + Delta-G solvation = -3972.722078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10300 -41.00278 -39.01709 -37.39645 -36.58798 -35.59601 -34.09291 -32.27444 -31.67644 -30.48061 -30.13019 -28.39287 -26.50788 -25.75697 -25.16216 -23.98578 -22.99676 -22.32633 -21.04569 -20.16902 -19.22495 -18.93932 -18.42440 -17.78900 -17.07526 -16.97422 -16.70195 -16.34207 -15.89644 -15.70758 -15.22336 -15.06743 -14.97045 -14.83880 -14.61034 -14.36773 -14.20398 -14.10568 -13.79861 -13.50948 -13.38111 -13.23736 -13.11358 -12.97482 -12.83628 -12.76492 -12.62310 -12.46114 -12.25850 -11.98072 -11.88408 -11.85305 -11.78245 -11.70210 -11.46176 -11.41350 -10.83072 -10.76990 -10.41499 -9.64366 -9.49846 -8.95665 -7.80880 -5.27957 1.37046 1.43106 1.50166 1.61077 1.73751 1.99713 2.29191 2.45474 3.28275 3.35369 3.61601 3.64562 3.72279 3.82806 3.85661 3.91687 3.95792 4.00104 4.02304 4.14134 4.32837 4.35495 4.43760 4.50057 4.51619 4.55906 4.61235 4.66879 4.71717 4.78651 4.86297 4.88604 4.93775 4.95073 5.08383 5.11170 5.13277 5.18286 5.22924 5.27258 5.36779 5.43123 5.47861 5.50051 5.62781 5.80405 6.19547 6.56974 6.68924 7.00712 7.28397 7.46006 7.73943 8.36494 9.20429 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003868 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.695918 B = 7237.548268 C = 8614.781173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.153 0.847 4 C 0.500 3.500 5 O -0.564 6.564 6 N -0.614 5.614 7 C 0.094 3.906 8 C -0.114 4.114 9 C -0.090 4.090 10 H 0.132 0.868 11 C 0.137 3.863 12 N -0.629 5.629 13 C -0.245 4.245 14 H 0.091 0.909 15 C -0.075 4.075 16 N -0.951 5.951 17 Si 0.984 3.016 18 H -0.271 1.271 19 H -0.301 1.301 20 H -0.269 1.269 21 C 0.193 3.807 22 C 0.120 3.880 23 H 0.062 0.938 24 N -0.597 5.597 25 C 0.105 3.895 26 C -0.134 4.134 27 C -0.111 4.111 28 C -0.133 4.133 29 C 0.505 3.495 30 O -0.580 6.580 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.130 0.870 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.239 0.761 41 H -0.028 1.028 42 H 0.030 0.970 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.120 0.880 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 20.728 -18.080 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 H 0.171 0.829 4 C 0.288 3.712 5 O -0.441 6.441 6 N -0.349 5.349 7 C -0.027 4.027 8 C -0.152 4.152 9 C -0.109 4.109 10 H 0.150 0.850 11 C 0.012 3.988 12 N -0.356 5.356 13 C -0.374 4.374 14 H 0.109 0.891 15 C -0.268 4.268 16 N -0.600 5.600 17 Si 0.811 3.189 18 H -0.196 1.196 19 H -0.228 1.228 20 H -0.194 1.194 21 C 0.067 3.933 22 C 0.015 3.985 23 H 0.080 0.920 24 N -0.330 5.330 25 C -0.015 4.015 26 C -0.171 4.171 27 C -0.149 4.149 28 C -0.173 4.173 29 C 0.294 3.706 30 O -0.459 6.459 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.148 0.852 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.049 0.951 41 H -0.010 1.010 42 H 0.048 0.952 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.103 0.897 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.170 19.618 -17.829 27.009 hybrid contribution -0.516 -2.089 0.947 2.351 sum 4.654 17.529 -16.882 24.778 Atomic orbital electron populations 1.22086 0.92502 1.02581 1.04181 1.20999 0.96359 0.97165 0.82180 0.82914 1.21467 0.78304 0.86410 0.85052 1.90758 1.48509 1.19091 1.85743 1.48662 1.59957 1.18867 1.07413 1.22840 1.00397 0.82596 0.96841 1.22843 0.96313 1.01880 0.94167 1.22904 1.00746 0.95119 0.92146 0.84974 1.21254 0.97374 0.84440 0.95701 1.44925 1.79007 1.08747 1.02933 1.19502 1.37222 0.90304 0.90347 0.89145 1.25867 1.02687 1.00687 0.97524 1.70328 1.55403 1.21584 1.12675 0.85080 0.78694 0.77752 0.77398 1.19622 1.22772 1.19439 1.21315 0.93516 0.95715 0.82717 1.22555 0.95929 0.95637 0.84405 0.91982 1.47335 1.51889 1.11283 1.22531 1.21839 0.93800 0.94422 0.91468 1.21918 0.97677 0.97771 0.99754 1.21649 0.99948 0.97220 0.96052 1.21679 1.02891 0.98554 0.94130 1.20742 0.80155 0.82394 0.87273 1.90777 1.38641 1.71030 1.45451 0.94655 0.89884 0.88773 0.86829 0.89086 0.93538 0.85182 0.95045 0.94683 0.95133 1.01029 0.95178 0.89368 0.88388 0.92824 0.86129 0.89728 0.88669 0.88727 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 8.84 71.98 0.64 -3.61 16 2 C 0.14 3.77 2.35 44.24 0.10 3.87 16 3 H 0.15 2.40 7.44 -2.39 -0.02 2.38 16 4 C 0.50 20.00 6.57 87.66 0.58 20.58 16 5 O -0.56 -30.28 13.65 19.64 0.27 -30.02 16 6 N -0.61 -22.04 2.85 -783.33 -2.23 -24.27 16 7 C 0.09 2.07 6.40 86.96 0.56 2.63 16 8 C -0.11 -2.83 6.29 31.95 0.20 -2.63 16 9 C -0.09 -2.87 3.87 -9.31 -0.04 -2.91 16 10 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 11 C 0.14 5.70 6.68 86.45 0.58 6.28 16 12 N -0.63 -35.62 3.41 -694.65 -2.37 -37.99 16 13 C -0.24 -14.97 10.25 84.03 0.86 -14.11 16 14 H 0.09 5.12 7.83 -2.91 -0.02 5.10 16 15 C -0.08 -4.79 5.49 84.86 0.47 -4.32 16 16 N -0.95 -66.66 10.16 21.65 0.22 -66.44 16 17 Si 0.98 50.41 29.55 68.60 2.03 52.44 16 18 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 20 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 21 C 0.19 11.31 4.77 86.44 0.41 11.72 16 22 C 0.12 5.15 3.86 46.02 0.18 5.33 16 23 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 24 N -0.60 -15.38 2.73 -806.79 -2.20 -17.58 16 25 C 0.11 1.40 6.25 86.49 0.54 1.94 16 26 C -0.13 -1.56 6.02 30.68 0.18 -1.38 16 27 C -0.11 -1.49 6.03 30.73 0.19 -1.31 16 28 C -0.13 -3.30 6.03 29.71 0.18 -3.12 16 29 C 0.50 17.31 6.16 87.72 0.54 17.85 16 30 O -0.58 -27.97 12.34 19.65 0.24 -27.73 16 31 H 0.03 1.39 6.06 -2.39 -0.01 1.37 16 32 H 0.08 1.93 6.03 -2.39 -0.01 1.92 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.69 5.67 -2.38 -0.01 1.68 16 36 H 0.05 1.50 7.92 -2.39 -0.02 1.48 16 37 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.04 1.39 7.77 -2.39 -0.02 1.37 16 40 H 0.24 16.66 8.31 -92.71 -0.77 15.89 16 41 H -0.03 -1.89 7.94 -2.39 -0.02 -1.91 16 42 H 0.03 2.13 6.25 -2.39 -0.01 2.11 16 43 H 0.09 0.92 8.03 -2.39 -0.02 0.90 16 44 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.87 8.12 -2.38 -0.02 0.85 16 46 H 0.12 0.56 8.14 -2.39 -0.02 0.55 16 47 H 0.08 0.92 8.13 -2.39 -0.02 0.90 16 48 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -104.37 376.93 3.04 -101.33 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.92 Total: 13.43 kcal Atomic # 6 Polarization: 30.66 SS G_CDS: 6.16 Total: 36.82 kcal Atomic # 7 Polarization: -139.70 SS G_CDS: -6.59 Total: -146.28 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: 0.51 Total: -57.75 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.03 Total: 52.44 kcal Total: -104.37 3.04 -101.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076601044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.873 kcal (2) G-P(sol) polarization free energy of solvation -104.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds