Wall clock time and date at job start Tue Mar 31 2020 19:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47283 * 2 1 4 4 C 1.36452 * 124.84825 * 269.97711 * 3 2 1 5 5 C 1.50701 * 125.57163 * 359.97438 * 4 3 2 6 6 C 1.34486 * 108.85587 * 179.76894 * 4 3 2 7 7 C 1.46684 * 106.33367 * 0.37328 * 6 4 3 8 8 C 1.47260 * 126.94499 * 179.89034 * 7 6 4 9 9 O 1.21626 * 120.00245 * 179.68709 * 8 7 6 10 10 N 1.34777 * 119.99976 * 359.68670 * 8 7 6 11 11 C 1.46504 * 120.00080 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.91676 * 37.44772 * 11 10 8 13 13 C 1.54912 * 111.00199 * 273.54221 * 11 10 8 14 14 N 1.47419 * 104.82985 * 204.91508 * 13 11 10 15 15 C 1.36942 * 125.64839 * 204.08990 * 14 13 11 16 16 H 1.07992 * 119.99706 * 6.65716 * 15 14 13 17 17 C 1.38812 * 119.99928 * 186.65061 * 15 14 13 18 18 N 1.31619 * 119.99814 * 7.38075 * 17 15 14 19 19 Si 1.86804 * 119.99683 * 187.38332 * 17 15 14 20 20 H 1.48500 * 109.46845 * 265.01760 * 19 17 15 21 21 H 1.48500 * 109.46905 * 145.01852 * 19 17 15 22 22 H 1.48502 * 109.47029 * 25.01940 * 19 17 15 23 23 C 1.47026 * 108.70506 * 24.36095 * 14 13 11 24 24 C 1.54336 * 107.26214 * 358.57986 * 23 14 13 25 25 H 1.09004 * 110.51446 * 96.45669 * 24 23 14 26 26 O 1.42898 * 111.00273 * 219.59851 * 24 23 14 27 27 C 1.42890 * 114.00653 * 263.78707 * 26 24 23 28 28 C 1.34652 * 124.85712 * 89.99397 * 3 2 1 29 29 C 1.50706 * 125.79649 * 0.02562 * 28 3 2 30 30 H 1.08994 * 109.47456 * 300.00121 * 1 2 3 31 31 H 1.09006 * 109.47241 * 60.00457 * 1 2 3 32 32 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47195 * 239.99442 * 2 1 3 34 34 H 1.09006 * 109.47241 * 119.99543 * 2 1 3 35 35 H 1.09007 * 109.46727 * 90.00316 * 5 4 3 36 36 H 1.08997 * 109.46977 * 210.00222 * 5 4 3 37 37 H 1.09000 * 109.47342 * 330.00823 * 5 4 3 38 38 H 1.08006 * 126.83225 * 180.25277 * 6 4 3 39 39 H 0.97004 * 120.00067 * 359.97438 * 10 8 7 40 40 H 1.09002 * 110.36476 * 86.08061 * 13 11 10 41 41 H 1.08993 * 110.36482 * 323.76006 * 13 11 10 42 42 H 0.96999 * 119.99355 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.88022 * 118.12904 * 23 14 13 44 44 H 1.08996 * 109.87722 * 239.29473 * 23 14 13 45 45 H 1.08997 * 109.47565 * 179.97438 * 27 26 24 46 46 H 1.09000 * 109.47241 * 300.00534 * 27 26 24 47 47 H 1.09000 * 109.47232 * 59.99781 * 27 26 24 48 48 H 1.09000 * 109.46995 * 269.99415 * 29 28 3 49 49 H 1.08994 * 109.47241 * 29.99877 * 29 28 3 50 50 H 1.08998 * 109.46964 * 149.99781 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2786 2.1161 -1.1198 5 6 2.1113 1.6396 -2.5397 6 6 2.7046 3.3367 -0.7493 7 6 2.7124 3.3433 0.7175 8 6 3.1059 4.4581 1.5956 9 8 3.0583 4.3266 2.8038 10 7 3.5188 5.6241 1.0603 11 6 3.9108 6.7330 1.9339 12 1 4.4374 6.3667 2.8151 13 6 2.6807 7.5845 2.3360 14 7 3.2300 8.9162 2.6496 15 6 2.6479 9.8470 3.4682 16 1 1.7621 9.5925 4.0310 17 6 3.1966 11.1176 3.5745 18 7 4.1858 11.4756 2.7834 19 14 2.5311 12.3194 4.8404 20 1 1.5156 13.1965 4.2042 21 1 3.6435 13.1507 5.3664 22 1 1.9052 11.5662 5.9567 23 6 4.5029 9.0819 1.9327 24 6 4.7697 7.7706 1.1639 25 1 4.4339 7.8585 0.1306 26 8 6.1538 7.4192 1.2155 27 6 6.9034 7.8403 0.0742 28 6 2.2747 2.1068 1.1049 29 6 2.1087 1.6359 2.5269 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.1019 1.8670 -2.8827 36 1 2.8349 2.1442 -3.1799 37 1 2.2759 0.5630 -2.5834 38 1 2.9869 4.1497 -1.4019 39 1 3.5571 5.7288 0.0967 40 1 2.1949 7.1583 3.2138 41 1 1.9771 7.6500 1.5062 42 1 4.5689 12.3636 2.8575 43 1 4.4290 9.9152 1.2340 44 1 5.3083 9.2625 2.6446 45 1 7.9437 7.5363 0.1903 46 1 6.4882 7.3811 -0.8229 47 1 6.8502 8.9253 -0.0152 48 1 1.0997 1.8648 2.8699 49 1 2.2734 0.5596 2.5748 50 1 2.8329 2.1431 3.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081909635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:24 Heat of formation + Delta-G solvation = -9.556804 kcal Electronic energy + Delta-G solvation = -29629.470213 eV Core-core repulsion = 25658.435159 eV Total energy + Delta-G solvation = -3971.035054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60863 -39.23202 -37.84113 -35.79022 -34.36520 -33.84339 -32.76661 -31.67575 -29.70846 -29.29959 -28.58389 -27.06221 -26.04520 -25.06993 -24.18086 -23.69542 -21.84534 -20.41981 -20.40167 -19.61692 -18.71327 -17.18063 -16.84784 -16.25600 -15.96378 -15.52337 -15.34135 -14.95715 -14.66259 -14.30260 -14.23452 -14.11473 -13.69953 -13.61423 -13.41219 -13.28927 -13.14818 -13.07913 -12.76177 -12.54538 -12.52610 -12.28483 -12.12344 -11.83437 -11.78382 -11.64910 -11.47037 -11.43062 -11.10851 -10.95235 -10.74866 -10.66778 -10.11364 -9.85442 -9.71935 -9.50129 -8.97998 -8.71614 -8.61649 -8.44060 -8.01543 -6.79288 -5.66290 -3.02201 1.83067 2.30541 2.59064 3.44776 3.50292 3.53079 3.67977 3.84525 4.22413 4.25901 4.46049 4.56626 4.58434 4.68090 4.74524 4.98301 5.10816 5.14192 5.17879 5.22441 5.27273 5.36882 5.49867 5.53135 5.54140 5.54581 5.62052 5.65539 5.66109 5.74186 5.80622 5.82797 5.94705 5.98325 5.98870 6.17337 6.23230 6.31090 6.72179 6.75898 6.78692 6.99658 7.07322 7.15862 7.31303 7.59857 7.79632 7.88775 8.00873 8.28028 8.73556 9.23999 9.84956 10.49252 11.44021 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.002690 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.342427 B =10406.336640 C =11344.145866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.007 3.993 5 C -0.081 4.081 6 C -0.165 4.165 7 C -0.227 4.227 8 C 0.591 3.409 9 O -0.550 6.550 10 N -0.712 5.712 11 C 0.137 3.863 12 H 0.102 0.898 13 C 0.131 3.869 14 N -0.600 5.600 15 C -0.225 4.225 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.161 3.839 24 C 0.057 3.943 25 H 0.063 0.937 26 O -0.378 6.378 27 C 0.034 3.966 28 C 0.104 3.896 29 C -0.092 4.092 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.143 0.857 39 H 0.395 0.605 40 H 0.051 0.949 41 H 0.022 0.978 42 H 0.252 0.748 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.033 0.967 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -23.882 -12.651 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.117 5.117 4 C -0.101 4.101 5 C -0.139 4.139 6 C -0.189 4.189 7 C -0.237 4.237 8 C 0.379 3.621 9 O -0.429 6.429 10 N -0.361 5.361 11 C 0.031 3.969 12 H 0.120 0.880 13 C 0.003 3.997 14 N -0.327 5.327 15 C -0.353 4.353 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.035 3.965 24 C -0.002 4.002 25 H 0.081 0.919 26 O -0.296 6.296 27 C -0.062 4.062 28 C -0.012 4.012 29 C -0.149 4.149 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.870 -24.178 -11.589 26.966 hybrid contribution -0.345 0.951 -0.288 1.052 sum -3.216 -23.228 -11.878 26.286 Atomic orbital electron populations 1.22152 0.94187 1.02942 1.03452 1.21845 0.95705 0.80855 1.04330 1.43602 1.51154 1.11793 1.05108 1.20130 1.08696 0.92670 0.88558 1.20301 1.02781 1.00970 0.89818 1.21770 1.07231 0.96651 0.93232 1.20151 1.15468 0.94963 0.93098 1.17297 0.76284 0.81425 0.87050 1.90733 1.55091 1.82468 1.14617 1.45694 1.67643 1.13026 1.09783 1.22301 0.95794 0.85074 0.93704 0.87971 1.21831 0.93309 0.86284 0.98249 1.44268 1.21375 1.12389 1.54690 1.19082 1.08723 0.90529 1.16970 0.90229 1.24811 0.98867 0.97122 0.99696 1.69932 1.27897 1.19536 1.39584 0.86080 0.77692 0.80920 0.80980 1.21693 1.21648 1.20549 1.21594 0.88849 0.90898 0.95114 1.23825 0.80774 0.96815 0.98777 0.91908 1.87902 1.20409 1.79310 1.42025 1.22702 0.96063 0.99317 0.88168 1.20249 1.00840 0.91081 0.89053 1.20560 1.04387 1.00324 0.89679 0.91636 0.91790 0.90738 0.89208 0.89120 0.91193 0.90159 0.92040 0.83942 0.77172 0.93101 0.96018 0.93770 0.91746 0.93622 0.90331 0.94814 0.93682 0.90597 0.92290 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.15 0.38 -0.53 16 2 C 0.09 0.57 6.30 -4.05 -0.03 0.55 16 3 N -0.44 -4.35 2.69 -107.96 -0.29 -4.64 16 4 C 0.01 0.07 6.85 -81.86 -0.56 -0.49 16 5 C -0.08 -0.51 10.06 36.01 0.36 -0.15 16 6 C -0.16 -1.96 10.45 -37.50 -0.39 -2.35 16 7 C -0.23 -3.32 6.29 -103.35 -0.65 -3.97 16 8 C 0.59 10.39 7.81 -12.59 -0.10 10.29 16 9 O -0.55 -11.32 14.56 5.25 0.08 -11.24 16 10 N -0.71 -11.97 5.23 -52.85 -0.28 -12.24 16 11 C 0.14 2.76 3.04 -65.78 -0.20 2.56 16 12 H 0.10 2.31 7.73 -51.93 -0.40 1.91 16 13 C 0.13 2.98 6.93 -2.53 -0.02 2.96 16 14 N -0.60 -16.05 3.39 -170.07 -0.58 -16.62 16 15 C -0.22 -6.50 10.26 -15.06 -0.15 -6.65 16 16 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 17 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 18 N -0.92 -27.51 10.48 55.49 0.58 -26.92 16 19 Si 0.91 22.67 29.56 -169.99 -5.02 17.64 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 C 0.16 4.05 5.21 -3.06 -0.02 4.03 16 24 C 0.06 1.14 3.05 -24.89 -0.08 1.06 16 25 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 26 O -0.38 -7.27 10.44 -35.23 -0.37 -7.64 16 27 C 0.03 0.51 10.85 101.05 1.10 1.60 16 28 C 0.10 1.31 6.89 -81.88 -0.56 0.75 16 29 C -0.09 -1.03 9.52 36.01 0.34 -0.69 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.39 6.90 -51.93 -0.36 0.04 16 34 H 0.09 0.47 6.88 -51.93 -0.36 0.11 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.30 6.94 -51.93 -0.36 -0.06 16 38 H 0.14 1.43 7.70 -52.48 -0.40 1.03 16 39 H 0.39 5.56 7.64 -40.82 -0.31 5.25 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.06 1.75 6.99 -51.93 -0.36 1.39 16 44 H 0.05 1.28 7.83 -51.93 -0.41 0.88 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.49 6.92 -51.93 -0.36 0.13 16 50 H 0.10 1.40 6.47 -51.93 -0.34 1.07 16 LS Contribution 402.21 15.07 6.06 6.06 Total: -1.00 -35.15 402.21 -8.74 -43.89 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.25 Total: 3.10 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.67 Total: 8.61 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.56 Total: -60.43 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.29 Total: -18.88 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.15 -8.74 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081909635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.331 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds