Wall clock time and date at job start Tue Mar 31 2020 18:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.47153 * 2 1 4 4 C 1.50699 * 109.46962 * 119.99966 * 2 1 3 5 5 O 1.21277 * 119.99969 * 120.00277 * 4 2 1 6 6 N 1.34780 * 119.99921 * 299.99883 * 4 2 1 7 7 C 1.47290 * 136.54435 * 359.63320 * 6 4 2 8 8 C 1.54371 * 87.50189 * 151.46117 * 7 6 4 9 9 H 1.08992 * 114.92586 * 141.75107 * 8 7 6 10 10 C 1.53064 * 112.44605 * 274.15258 * 8 7 6 11 11 C 1.53150 * 109.21198 * 142.78203 * 10 8 7 12 12 N 1.46540 * 108.25302 * 301.58768 * 11 10 8 13 13 C 1.36932 * 119.74022 * 236.44916 * 12 11 10 14 14 H 1.08004 * 120.00437 * 26.55844 * 13 12 11 15 15 C 1.38810 * 120.00015 * 206.56781 * 13 12 11 16 16 N 1.31619 * 120.00081 * 12.78538 * 15 13 12 17 17 Si 1.86805 * 120.00203 * 192.78788 * 15 13 12 18 18 H 1.48495 * 109.47192 * 94.97051 * 17 15 13 19 19 H 1.48492 * 109.47182 * 214.97342 * 17 15 13 20 20 H 1.48499 * 109.46807 * 334.97421 * 17 15 13 21 21 C 1.43242 * 120.57715 * 55.55478 * 12 11 10 22 22 C 1.46466 * 136.54403 * 179.97438 * 6 4 2 23 23 H 1.09004 * 111.43442 * 96.34864 * 22 6 4 24 24 N 1.46497 * 109.47322 * 239.99893 * 2 1 3 25 25 C 1.45758 * 117.94559 * 119.73660 * 24 2 1 26 26 C 1.53102 * 110.38517 * 160.74513 * 25 24 2 27 27 C 1.53340 * 108.52855 * 51.11557 * 26 25 24 28 28 C 1.53070 * 108.42749 * 292.31172 * 27 26 25 29 29 C 1.33352 * 117.94674 * 300.00274 * 24 2 1 30 30 O 1.21280 * 118.24448 * 2.19776 * 29 24 2 31 31 H 1.09007 * 109.46784 * 59.99630 * 1 2 3 32 32 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47385 * 300.00838 * 1 2 3 34 34 H 1.09007 * 113.52534 * 266.08559 * 7 6 4 35 35 H 1.09005 * 113.53276 * 36.71334 * 7 6 4 36 36 H 1.09000 * 109.51137 * 262.70246 * 10 8 7 37 37 H 1.09006 * 109.51577 * 22.86086 * 10 8 7 38 38 H 1.08997 * 109.70530 * 61.27695 * 11 10 8 39 39 H 1.08998 * 109.70727 * 181.90154 * 11 10 8 40 40 H 0.96997 * 120.00075 * 180.02562 * 16 15 13 41 41 H 1.08998 * 108.84236 * 199.44897 * 21 12 11 42 42 H 1.09002 * 107.22534 * 82.07821 * 21 12 11 43 43 H 1.08993 * 109.30220 * 281.24070 * 25 24 2 44 44 H 1.09000 * 109.29932 * 40.61677 * 25 24 2 45 45 H 1.09001 * 109.80743 * 291.32899 * 26 25 24 46 46 H 1.09004 * 109.67835 * 170.83196 * 26 25 24 47 47 H 1.09004 * 109.67549 * 172.57791 * 27 26 25 48 48 H 1.08998 * 109.70121 * 52.06179 * 27 26 25 49 49 H 1.09004 * 109.39902 * 288.76992 * 28 27 26 50 50 H 1.08996 * 109.33389 * 168.98378 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.9225 0.8704 3.0017 8 6 0.6397 -0.0172 4.2327 9 1 0.6379 0.5085 5.1874 10 6 -0.5702 -0.9321 4.0278 11 6 -0.2969 -2.2852 4.6911 12 7 0.9139 -2.8535 4.0926 13 6 0.8678 -4.0937 3.5139 14 1 -0.0618 -4.4672 3.1105 15 6 2.0159 -4.8709 3.4459 16 7 3.0782 -4.5386 4.1484 17 14 2.0533 -6.3886 2.3573 18 1 2.6391 -6.0376 1.0387 19 1 2.8801 -7.4400 3.0022 20 1 0.6704 -6.8944 2.1657 21 6 2.1413 -2.1151 4.0906 22 6 1.9777 -0.6339 3.8418 23 1 2.8137 -0.0698 4.2553 24 7 2.0184 -0.6906 -1.1961 25 6 2.8482 0.0621 -2.1285 26 6 3.6414 -0.8915 -3.0261 27 6 2.6686 -1.9061 -3.6389 28 6 2.1402 -2.8067 -2.5197 29 6 1.6714 -1.9669 -1.3663 30 8 0.9383 -2.4767 -0.5456 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5140 0.8899 34 1 1.5227 1.7514 3.2294 35 1 0.0322 1.1045 2.4180 36 1 -1.4516 -0.4767 4.4793 37 1 -0.7405 -1.0773 2.9610 38 1 -0.1472 -2.1461 5.7618 39 1 -1.1400 -2.9548 4.5212 40 1 3.8806 -5.0815 4.1006 41 1 2.7999 -2.5289 3.3269 42 1 2.6057 -2.2582 5.0663 43 1 2.2123 0.6974 -2.7448 44 1 3.5428 0.6880 -1.5682 45 1 4.3925 -1.4158 -2.4353 46 1 4.1296 -0.3269 -3.8205 47 1 3.1888 -2.5109 -4.3817 48 1 1.8380 -1.3806 -4.1100 49 1 2.9361 -3.4714 -2.1836 50 1 1.3078 -3.4006 -2.8970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084847926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:28 Heat of formation + Delta-G solvation = 13.090745 kcal Electronic energy + Delta-G solvation = -32404.499430 eV Core-core repulsion = 28434.446448 eV Total energy + Delta-G solvation = -3970.052982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87168 -40.03751 -37.33201 -36.22065 -35.22368 -34.41196 -32.04603 -30.86980 -30.02596 -29.44514 -28.36483 -26.81724 -24.66689 -24.11590 -23.69978 -22.97391 -22.06375 -20.87386 -19.77564 -18.30164 -17.65553 -17.09854 -16.72355 -16.03599 -15.60969 -15.60589 -15.34806 -14.69760 -14.25442 -14.16377 -13.90882 -13.84160 -13.63291 -13.41284 -13.21906 -13.12157 -12.97183 -12.71205 -12.33130 -12.13618 -11.98897 -11.74834 -11.72148 -11.40478 -11.29604 -11.05538 -11.04608 -10.95894 -10.88663 -10.55834 -10.51322 -10.32841 -10.04572 -9.75889 -9.65061 -9.40471 -9.11277 -8.95028 -8.38912 -8.09839 -7.94863 -6.40371 -5.50623 -2.94469 2.87418 3.18330 3.37806 3.56608 3.58220 3.65239 3.68820 4.59716 4.63273 4.63971 4.73469 4.77415 4.79296 4.86200 5.10473 5.18122 5.27476 5.32302 5.37710 5.42656 5.46552 5.58587 5.62156 5.63562 5.72724 5.75596 5.76371 5.81184 5.84837 5.90559 5.91276 6.02560 6.10689 6.22700 6.24447 6.39554 6.46071 6.54397 6.62775 6.67546 6.73796 6.90316 7.12828 7.66714 7.72173 7.93779 8.09918 8.49994 8.61072 8.75785 8.97843 9.55052 10.17863 10.62329 11.56795 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.006065 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.241836 B = 4615.393673 C = 6355.430362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.134 3.866 3 H 0.098 0.902 4 C 0.537 3.463 5 O -0.499 6.499 6 N -0.633 5.633 7 C 0.091 3.909 8 C -0.113 4.113 9 H 0.088 0.912 10 C -0.115 4.115 11 C 0.148 3.852 12 N -0.578 5.578 13 C -0.242 4.242 14 H 0.059 0.941 15 C 0.012 3.988 16 N -0.907 5.907 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.295 1.295 20 H -0.281 1.281 21 C 0.169 3.831 22 C 0.119 3.881 23 H 0.070 0.930 24 N -0.596 5.596 25 C 0.119 3.881 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.133 4.133 29 C 0.520 3.480 30 O -0.512 6.512 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.249 0.751 41 H 0.101 0.899 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.099 0.901 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 16.385 -12.039 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.027 3.973 3 H 0.116 0.884 4 C 0.324 3.676 5 O -0.371 6.371 6 N -0.371 5.371 7 C -0.033 4.033 8 C -0.132 4.132 9 H 0.106 0.894 10 C -0.155 4.155 11 C 0.021 3.979 12 N -0.299 5.299 13 C -0.372 4.372 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.552 5.552 17 Si 0.733 3.267 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.207 1.207 21 C 0.042 3.958 22 C 0.014 3.986 23 H 0.087 0.913 24 N -0.331 5.331 25 C -0.004 4.004 26 C -0.174 4.174 27 C -0.158 4.158 28 C -0.173 4.173 29 C 0.308 3.692 30 O -0.386 6.386 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.007 15.315 -11.924 19.514 hybrid contribution 0.361 -0.430 -0.674 0.877 sum -1.646 14.885 -12.598 19.570 Atomic orbital electron populations 1.22254 0.92903 1.05596 1.01675 1.20822 0.96266 0.95536 0.84712 0.88409 1.19927 0.80601 0.84832 0.82245 1.90763 1.37116 1.24431 1.84790 1.49380 1.53350 1.29541 1.04820 1.23456 0.94902 0.90947 0.93994 1.22776 0.96896 0.96737 0.96814 0.89377 1.21815 0.94445 0.97433 1.01778 1.20723 0.90883 0.91936 0.94310 1.42817 1.05682 1.15728 1.65654 1.19062 0.96032 0.91622 1.30453 0.92293 1.24906 0.97224 0.97799 0.98637 1.70024 1.03657 1.40042 1.41523 0.86258 0.77203 0.82381 0.80825 1.21467 1.22197 1.20661 1.19710 0.89828 0.84993 1.01300 1.22640 0.95561 1.01367 0.78984 0.91254 1.47058 1.52200 1.11729 1.22147 1.21376 0.93329 0.94171 0.91509 1.21899 0.98399 0.97862 0.99193 1.21642 0.99172 0.97527 0.97493 1.21645 1.03349 0.98388 0.93903 1.19936 0.80900 0.81187 0.87219 1.90792 1.35585 1.69209 1.42984 0.92507 0.88980 0.91304 0.90703 0.90930 0.92820 0.91901 0.96320 0.92675 0.94107 0.88148 0.95925 0.91972 0.91196 0.90627 0.90036 0.90821 0.91345 0.88318 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 8.97 37.16 0.33 -2.11 16 2 C 0.13 2.09 2.91 -69.08 -0.20 1.89 16 3 H 0.10 1.18 7.79 -51.92 -0.40 0.77 16 4 C 0.54 11.19 6.59 -10.98 -0.07 11.12 16 5 O -0.50 -13.16 13.83 -15.22 -0.21 -13.37 16 6 N -0.63 -11.99 3.30 -187.52 -0.62 -12.61 16 7 C 0.09 1.24 7.45 -11.39 -0.08 1.15 16 8 C -0.11 -1.81 4.52 -90.16 -0.41 -2.22 16 9 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 10 C -0.12 -2.05 5.75 -26.62 -0.15 -2.20 16 11 C 0.15 3.27 6.46 -3.94 -0.03 3.24 16 12 N -0.58 -15.71 2.98 -176.81 -0.53 -16.24 16 13 C -0.24 -7.42 9.49 -15.06 -0.14 -7.57 16 14 H 0.06 1.83 7.84 -52.48 -0.41 1.41 16 15 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 16 N -0.91 -28.99 10.95 55.49 0.61 -28.38 16 17 Si 0.90 25.09 29.57 -169.99 -5.03 20.07 16 18 H -0.29 -8.26 7.11 56.52 0.40 -7.86 16 19 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 20 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 21 C 0.17 4.46 4.47 -6.73 -0.03 4.43 16 22 C 0.12 2.40 4.07 -77.70 -0.32 2.08 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 24 N -0.60 -9.01 2.61 -168.58 -0.44 -9.45 16 25 C 0.12 1.22 6.26 -4.39 -0.03 1.20 16 26 C -0.14 -1.25 6.03 -26.50 -0.16 -1.41 16 27 C -0.12 -1.15 6.03 -26.52 -0.16 -1.31 16 28 C -0.13 -1.87 6.03 -28.10 -0.17 -2.04 16 29 C 0.52 9.46 6.12 -11.87 -0.07 9.39 16 30 O -0.51 -12.09 12.86 -15.22 -0.20 -12.28 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.75 5.84 -51.93 -0.30 1.44 16 33 H 0.07 0.91 5.25 -51.93 -0.27 0.64 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.07 0.87 5.71 -51.93 -0.30 0.58 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.25 7.76 -51.93 -0.40 0.85 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 1.21 7.88 -51.93 -0.41 0.81 16 40 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.10 3.14 4.99 -51.93 -0.26 2.88 16 42 H 0.02 0.65 7.92 -51.93 -0.41 0.24 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 45 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 49 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 50 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -39.89 376.65 -10.73 -50.62 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.22 Total: 0.04 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: -1.78 Total: 15.93 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.98 Total: -66.68 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.41 Total: -25.66 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.03 Total: 20.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.89 -10.73 -50.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084847926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.710 kcal (2) G-P(sol) polarization free energy of solvation -39.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds