Wall clock time and date at job start Tue Mar 31 2020 18:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.47153 * 2 1 4 4 C 1.50699 * 109.46962 * 119.99966 * 2 1 3 5 5 O 1.21277 * 119.99969 * 120.00277 * 4 2 1 6 6 N 1.34780 * 119.99921 * 299.99883 * 4 2 1 7 7 C 1.47290 * 136.54435 * 359.63320 * 6 4 2 8 8 C 1.54371 * 87.50189 * 151.46117 * 7 6 4 9 9 H 1.08992 * 114.92586 * 141.75107 * 8 7 6 10 10 C 1.53064 * 112.44605 * 274.15258 * 8 7 6 11 11 C 1.53150 * 109.21198 * 142.78203 * 10 8 7 12 12 N 1.46540 * 108.25302 * 301.58768 * 11 10 8 13 13 C 1.36932 * 119.74022 * 236.44916 * 12 11 10 14 14 H 1.08004 * 120.00437 * 26.55844 * 13 12 11 15 15 C 1.38810 * 120.00015 * 206.56781 * 13 12 11 16 16 N 1.31619 * 120.00081 * 12.78538 * 15 13 12 17 17 Si 1.86805 * 120.00203 * 192.78788 * 15 13 12 18 18 H 1.48495 * 109.47192 * 94.97051 * 17 15 13 19 19 H 1.48492 * 109.47182 * 214.97342 * 17 15 13 20 20 H 1.48499 * 109.46807 * 334.97421 * 17 15 13 21 21 C 1.43242 * 120.57715 * 55.55478 * 12 11 10 22 22 C 1.46466 * 136.54403 * 179.97438 * 6 4 2 23 23 H 1.09004 * 111.43442 * 96.34864 * 22 6 4 24 24 N 1.46497 * 109.47322 * 239.99893 * 2 1 3 25 25 C 1.45758 * 117.94559 * 119.73660 * 24 2 1 26 26 C 1.53102 * 110.38517 * 160.74513 * 25 24 2 27 27 C 1.53340 * 108.52855 * 51.11557 * 26 25 24 28 28 C 1.53070 * 108.42749 * 292.31172 * 27 26 25 29 29 C 1.33352 * 117.94674 * 300.00274 * 24 2 1 30 30 O 1.21280 * 118.24448 * 2.19776 * 29 24 2 31 31 H 1.09007 * 109.46784 * 59.99630 * 1 2 3 32 32 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47385 * 300.00838 * 1 2 3 34 34 H 1.09007 * 113.52534 * 266.08559 * 7 6 4 35 35 H 1.09005 * 113.53276 * 36.71334 * 7 6 4 36 36 H 1.09000 * 109.51137 * 262.70246 * 10 8 7 37 37 H 1.09006 * 109.51577 * 22.86086 * 10 8 7 38 38 H 1.08997 * 109.70530 * 61.27695 * 11 10 8 39 39 H 1.08998 * 109.70727 * 181.90154 * 11 10 8 40 40 H 0.96997 * 120.00075 * 180.02562 * 16 15 13 41 41 H 1.08998 * 108.84236 * 199.44897 * 21 12 11 42 42 H 1.09002 * 107.22534 * 82.07821 * 21 12 11 43 43 H 1.08993 * 109.30220 * 281.24070 * 25 24 2 44 44 H 1.09000 * 109.29932 * 40.61677 * 25 24 2 45 45 H 1.09001 * 109.80743 * 291.32899 * 26 25 24 46 46 H 1.09004 * 109.67835 * 170.83196 * 26 25 24 47 47 H 1.09004 * 109.67549 * 172.57791 * 27 26 25 48 48 H 1.08998 * 109.70121 * 52.06179 * 27 26 25 49 49 H 1.09004 * 109.39902 * 288.76992 * 28 27 26 50 50 H 1.08996 * 109.33389 * 168.98378 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.9225 0.8704 3.0017 8 6 0.6397 -0.0172 4.2327 9 1 0.6379 0.5085 5.1874 10 6 -0.5702 -0.9321 4.0278 11 6 -0.2969 -2.2852 4.6911 12 7 0.9139 -2.8535 4.0926 13 6 0.8678 -4.0937 3.5139 14 1 -0.0618 -4.4672 3.1105 15 6 2.0159 -4.8709 3.4459 16 7 3.0782 -4.5386 4.1484 17 14 2.0533 -6.3886 2.3573 18 1 2.6391 -6.0376 1.0387 19 1 2.8801 -7.4400 3.0022 20 1 0.6704 -6.8944 2.1657 21 6 2.1413 -2.1151 4.0906 22 6 1.9777 -0.6339 3.8418 23 1 2.8137 -0.0698 4.2553 24 7 2.0184 -0.6906 -1.1961 25 6 2.8482 0.0621 -2.1285 26 6 3.6414 -0.8915 -3.0261 27 6 2.6686 -1.9061 -3.6389 28 6 2.1402 -2.8067 -2.5197 29 6 1.6714 -1.9669 -1.3663 30 8 0.9383 -2.4767 -0.5456 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5140 0.8899 34 1 1.5227 1.7514 3.2294 35 1 0.0322 1.1045 2.4180 36 1 -1.4516 -0.4767 4.4793 37 1 -0.7405 -1.0773 2.9610 38 1 -0.1472 -2.1461 5.7618 39 1 -1.1400 -2.9548 4.5212 40 1 3.8806 -5.0815 4.1006 41 1 2.7999 -2.5289 3.3269 42 1 2.6057 -2.2582 5.0663 43 1 2.2123 0.6974 -2.7448 44 1 3.5428 0.6880 -1.5682 45 1 4.3925 -1.4158 -2.4353 46 1 4.1296 -0.3269 -3.8205 47 1 3.1888 -2.5109 -4.3817 48 1 1.8380 -1.3806 -4.1100 49 1 2.9361 -3.4714 -2.1836 50 1 1.3078 -3.4006 -2.8970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084847926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:28 Heat of formation + Delta-G solvation = -15.727363 kcal Electronic energy + Delta-G solvation = -32405.749077 eV Core-core repulsion = 28434.446448 eV Total energy + Delta-G solvation = -3971.302629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22906 -41.39333 -38.90635 -37.42326 -37.19357 -35.59731 -34.02547 -32.14949 -31.89990 -30.54291 -29.91250 -28.59258 -25.88563 -25.57091 -25.22737 -24.49476 -23.22610 -22.53789 -21.17674 -19.62491 -19.31947 -18.63036 -17.91769 -17.69794 -17.33564 -16.95914 -16.69877 -16.26574 -16.02676 -15.64324 -15.28707 -15.07989 -14.95861 -14.84953 -14.76827 -14.46354 -14.28519 -14.21732 -14.00380 -13.67766 -13.28951 -13.16227 -13.07643 -12.96769 -12.76290 -12.71804 -12.56825 -12.33001 -12.21934 -11.99898 -11.97377 -11.91028 -11.84016 -11.76949 -11.48559 -11.00917 -10.69333 -10.45338 -10.37093 -9.63473 -9.42584 -8.65490 -7.88184 -5.34116 1.24050 1.34819 1.38001 1.58204 1.90764 1.98972 2.24158 2.43280 3.26544 3.44495 3.49405 3.66895 3.77100 3.81001 3.85732 3.89561 3.96120 4.01569 4.13490 4.24133 4.34407 4.46434 4.48449 4.53419 4.56487 4.59731 4.69005 4.70680 4.73234 4.78036 4.84066 4.88714 4.91197 4.94645 5.02603 5.04744 5.07571 5.11282 5.28438 5.31645 5.32137 5.44783 5.52782 5.54900 5.72859 5.81390 6.38442 6.53409 7.06359 7.19746 7.30425 7.49963 8.00223 8.30912 9.14201 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.006065 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.241836 B = 4615.393673 C = 6355.430362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.147 0.853 4 C 0.521 3.479 5 O -0.574 6.574 6 N -0.642 5.642 7 C 0.108 3.892 8 C -0.103 4.103 9 H 0.131 0.869 10 C -0.104 4.104 11 C 0.138 3.862 12 N -0.595 5.595 13 C -0.247 4.247 14 H 0.046 0.954 15 C -0.041 4.041 16 N -0.931 5.931 17 Si 0.953 3.047 18 H -0.308 1.308 19 H -0.280 1.280 20 H -0.267 1.267 21 C 0.185 3.815 22 C 0.102 3.898 23 H 0.090 0.910 24 N -0.593 5.593 25 C 0.108 3.892 26 C -0.134 4.134 27 C -0.109 4.109 28 C -0.136 4.136 29 C 0.506 3.494 30 O -0.581 6.581 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.037 0.963 38 H 0.031 0.969 39 H 0.045 0.955 40 H 0.243 0.757 41 H 0.043 0.957 42 H -0.015 1.015 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.122 0.878 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 21.255 -13.530 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.164 0.836 4 C 0.311 3.689 5 O -0.452 6.452 6 N -0.378 5.378 7 C -0.013 4.013 8 C -0.122 4.122 9 H 0.149 0.851 10 C -0.142 4.142 11 C 0.013 3.987 12 N -0.317 5.317 13 C -0.378 4.378 14 H 0.064 0.936 15 C -0.236 4.236 16 N -0.578 5.578 17 Si 0.783 3.217 18 H -0.237 1.237 19 H -0.206 1.206 20 H -0.192 1.192 21 C 0.058 3.942 22 C -0.003 4.003 23 H 0.108 0.892 24 N -0.326 5.326 25 C -0.013 4.013 26 C -0.172 4.172 27 C -0.146 4.146 28 C -0.176 4.176 29 C 0.296 3.704 30 O -0.461 6.461 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.003 0.997 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.140 0.860 47 H 0.112 0.888 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.360 20.282 -13.410 24.546 hybrid contribution 0.752 -1.942 -0.148 2.088 sum -2.607 18.340 -13.559 22.956 Atomic orbital electron populations 1.22138 0.92032 1.03009 1.04087 1.21005 0.96844 0.96791 0.82374 0.83555 1.21044 0.79537 0.84247 0.84111 1.90732 1.40573 1.27816 1.86073 1.49580 1.53315 1.31087 1.03811 1.23686 0.95714 0.90107 0.91750 1.22817 0.92727 0.96394 1.00233 0.85129 1.21677 0.97417 0.95229 0.99923 1.20983 0.88345 0.94273 0.95092 1.43033 1.07484 1.15166 1.66027 1.19238 0.95475 0.93182 1.29863 0.93587 1.25551 0.97287 1.00603 1.00197 1.70177 1.03802 1.40893 1.42929 0.85458 0.77788 0.80199 0.78303 1.23711 1.20634 1.19209 1.19293 0.88448 0.89142 0.97315 1.22655 0.99439 0.96956 0.81244 0.89209 1.47236 1.51732 1.11102 1.22495 1.21834 0.93830 0.94290 0.91375 1.21945 0.97644 0.97807 0.99785 1.21640 1.00006 0.97102 0.95863 1.21684 1.02690 0.98664 0.94522 1.20639 0.80059 0.82388 0.87324 1.90761 1.38852 1.70939 1.45529 0.89200 0.94011 0.89593 0.86105 0.88343 0.87972 0.94449 0.95122 0.93656 0.94790 0.93893 0.99743 0.88036 0.89931 0.93444 0.85960 0.88752 0.89239 0.90712 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 8.97 71.98 0.65 -3.56 16 2 C 0.14 4.01 2.91 44.25 0.13 4.14 16 3 H 0.15 2.80 7.79 -2.38 -0.02 2.79 16 4 C 0.52 22.01 6.59 87.66 0.58 22.59 16 5 O -0.57 -32.48 13.83 16.85 0.23 -32.25 16 6 N -0.64 -23.48 3.30 -865.57 -2.86 -26.34 16 7 C 0.11 2.39 7.45 81.19 0.60 3.00 16 8 C -0.10 -2.89 4.52 -10.50 -0.05 -2.94 16 9 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 10 C -0.10 -3.41 5.75 30.67 0.18 -3.24 16 11 C 0.14 6.12 6.46 86.42 0.56 6.68 16 12 N -0.59 -33.98 2.98 -713.30 -2.13 -36.10 16 13 C -0.25 -16.11 9.49 84.03 0.80 -15.31 16 14 H 0.05 3.05 7.84 -2.91 -0.02 3.02 16 15 C -0.04 -2.75 4.95 84.86 0.42 -2.33 16 16 N -0.93 -63.68 10.95 21.65 0.24 -63.45 16 17 Si 0.95 55.00 29.57 68.60 2.03 57.02 16 18 H -0.31 -18.74 7.11 99.48 0.71 -18.03 16 19 H -0.28 -15.35 7.11 99.48 0.71 -14.64 16 20 H -0.27 -14.64 7.11 99.48 0.71 -13.94 16 21 C 0.19 10.34 4.47 86.36 0.39 10.73 16 22 C 0.10 4.06 4.07 38.68 0.16 4.22 16 23 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 24 N -0.59 -17.37 2.61 -806.45 -2.10 -19.47 16 25 C 0.11 1.84 6.26 86.55 0.54 2.38 16 26 C -0.13 -2.14 6.03 30.74 0.19 -1.95 16 27 C -0.11 -1.86 6.03 30.73 0.19 -1.68 16 28 C -0.14 -4.02 6.03 29.71 0.18 -3.84 16 29 C 0.51 19.31 6.12 87.71 0.54 19.85 16 30 O -0.58 -29.70 12.86 16.84 0.22 -29.48 16 31 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.61 5.84 -2.39 -0.01 1.59 16 33 H 0.09 1.96 5.25 -2.39 -0.01 1.94 16 34 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.10 1.74 5.71 -2.38 -0.01 1.73 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.04 1.43 7.76 -2.38 -0.02 1.41 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.04 2.04 7.88 -2.39 -0.02 2.02 16 40 H 0.24 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.04 2.90 4.99 -2.39 -0.01 2.88 16 42 H -0.02 -0.92 7.92 -2.39 -0.02 -0.94 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.24 8.03 -2.39 -0.02 1.22 16 45 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 46 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 49 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 50 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -103.72 376.65 2.60 -101.13 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.93 Total: 10.20 kcal Atomic # 6 Polarization: 32.70 SS G_CDS: 6.03 Total: 38.73 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -6.85 Total: -145.36 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: 0.45 Total: -61.73 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 2.03 Total: 57.02 kcal Total: -103.72 2.60 -101.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084847926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.400 kcal (2) G-P(sol) polarization free energy of solvation -103.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds