Wall clock time and date at job start Tue Mar 31 2020 19:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46763 * 124.34806 * 90.00467 * 3 2 1 5 5 C 1.54480 * 105.47393 * 162.98185 * 4 3 2 6 6 H 1.09001 * 110.96462 * 267.29191 * 5 4 3 7 7 C 1.50700 * 110.96597 * 143.56793 * 5 4 3 8 8 O 1.21277 * 120.00417 * 0.02562 * 7 5 4 9 9 N 1.34779 * 119.99382 * 179.97438 * 7 5 4 10 10 C 1.47148 * 121.21799 * 359.72157 * 9 7 5 11 11 C 1.53329 * 107.71927 * 122.68843 * 10 9 7 12 12 C 1.53101 * 110.49876 * 57.57054 * 11 10 9 13 13 H 1.09004 * 113.05293 * 70.87124 * 12 11 10 14 14 C 1.56028 * 106.39504 * 195.29124 * 12 11 10 15 15 C 1.54504 * 102.60829 * 78.38301 * 14 12 11 16 16 N 1.47436 * 107.15214 * 22.84428 * 15 14 12 17 17 C 1.36929 * 126.06330 * 181.59199 * 16 15 14 18 18 H 1.08006 * 120.00230 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00173 * 0.03494 * 17 16 15 20 20 N 1.31621 * 119.99658 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00140 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47053 * 90.00096 * 21 19 17 23 23 H 1.48504 * 109.47125 * 210.00102 * 21 19 17 24 24 H 1.48496 * 109.47182 * 329.99917 * 21 19 17 25 25 C 1.46473 * 107.87433 * 1.62267 * 16 15 14 26 26 H 1.08995 * 108.41956 * 89.24291 * 25 16 15 27 27 C 1.46759 * 121.21123 * 179.97438 * 9 7 5 28 28 C 1.54629 * 101.76319 * 25.41207 * 5 4 3 29 29 C 1.34415 * 124.35240 * 269.70019 * 3 2 1 30 30 O 1.21285 * 124.93848 * 0.38955 * 29 3 2 31 31 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 32 32 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 34 34 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 35 35 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 36 36 H 1.09006 * 110.24107 * 281.97891 * 4 3 2 37 37 H 1.09004 * 110.24649 * 43.97662 * 4 3 2 38 38 H 1.09000 * 109.76174 * 242.33797 * 10 9 7 39 39 H 1.09003 * 109.75911 * 3.09151 * 10 9 7 40 40 H 1.09005 * 109.39931 * 297.25025 * 11 10 9 41 41 H 1.09000 * 109.19652 * 177.77052 * 11 10 9 42 42 H 1.08993 * 110.78297 * 320.10611 * 14 12 11 43 43 H 1.08995 * 110.94086 * 196.73490 * 14 12 11 44 44 H 1.08997 * 109.90726 * 263.45833 * 15 14 12 45 45 H 1.09002 * 110.04785 * 142.30276 * 15 14 12 46 46 H 0.97004 * 120.00007 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.23062 * 352.84142 * 27 9 7 48 48 H 1.09009 * 109.22655 * 112.23851 * 27 9 7 49 49 H 1.09000 * 110.48716 * 93.88350 * 28 5 4 50 50 H 1.09002 * 110.48668 * 216.39059 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1745 3.3441 0.7487 6 1 4.2332 3.1033 0.8449 7 6 2.8380 4.5986 1.5131 8 8 1.9723 4.5776 2.3622 9 7 3.4999 5.7436 1.2536 10 6 4.5598 5.7977 0.2343 11 6 4.1689 6.8706 -0.7889 12 6 3.9728 8.2232 -0.0991 13 1 4.9073 8.6661 0.2455 14 6 3.2112 9.1296 -1.1154 15 6 1.7546 8.6308 -0.9865 16 7 1.6296 7.9908 0.3359 17 6 0.5067 7.3883 0.8369 18 1 0.5242 6.9485 1.8232 19 6 -0.6542 7.3425 0.0771 20 7 -0.6753 7.8779 -1.1251 21 14 -2.1862 6.5212 0.7609 22 1 -3.0008 7.5243 1.4928 23 1 -2.9846 5.9549 -0.3559 24 1 -1.7913 5.4316 1.6893 25 6 2.9194 8.1145 1.0189 26 1 2.9256 9.0512 1.5762 27 6 3.1936 6.9807 1.9814 28 6 2.7695 3.4754 -0.7378 29 6 2.2766 2.0945 -1.1097 30 8 2.1329 1.6904 -2.2442 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 1.3637 2.5308 1.6429 37 1 2.8324 1.5530 1.9383 38 1 5.5086 6.0596 0.7027 39 1 4.6465 4.8295 -0.2588 40 1 3.2407 6.5803 -1.2812 41 1 4.9584 6.9587 -1.5352 42 1 3.5849 8.9745 -2.1275 43 1 3.2867 10.1798 -0.8335 44 1 1.5397 7.9057 -1.7714 45 1 1.0641 9.4711 -1.0587 46 1 -1.4866 7.8463 -1.6560 47 1 2.3157 6.8210 2.6073 48 1 4.0417 7.2448 2.6133 49 1 1.9745 4.2122 -0.8530 50 1 3.6322 3.7483 -1.3456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084952799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:11 Heat of formation + Delta-G solvation = -31.351699 kcal Electronic energy + Delta-G solvation = -31925.935487 eV Core-core repulsion = 27953.955336 eV Total energy + Delta-G solvation = -3971.980151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.86756 -39.62347 -38.11037 -36.19112 -35.09424 -33.90449 -32.84651 -31.22404 -30.02960 -28.88560 -28.37213 -27.64051 -24.87587 -24.46503 -23.41316 -22.58351 -22.25141 -20.03431 -19.77052 -19.13944 -18.20656 -17.44285 -16.69042 -16.55671 -15.88348 -15.52389 -15.08708 -14.90579 -14.72448 -14.30818 -14.01918 -13.85888 -13.71766 -13.57097 -13.38952 -13.30484 -12.83870 -12.82866 -12.49295 -12.23947 -12.05534 -11.96757 -11.60193 -11.48642 -11.40616 -11.28764 -11.24166 -11.11351 -10.91986 -10.79954 -10.70416 -10.10997 -9.90398 -9.87226 -9.81184 -9.66836 -9.51204 -9.29319 -8.71341 -8.53514 -8.18549 -6.77298 -5.64729 -2.96780 2.65780 2.91956 2.94052 3.35963 3.45955 3.52417 3.57285 4.26456 4.39275 4.56995 4.70013 4.87269 4.92274 5.02923 5.05114 5.11755 5.18432 5.28644 5.30947 5.43365 5.47326 5.48028 5.58957 5.61196 5.66528 5.71265 5.78176 5.79483 5.88313 5.93531 6.02849 6.03221 6.11746 6.14737 6.23133 6.28806 6.42231 6.46074 6.53746 6.60943 6.72104 6.91346 7.04461 7.10192 7.62361 7.64284 7.80418 7.90785 8.21801 8.29857 8.55150 9.28744 9.89705 10.54173 11.47346 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.005445 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.170377 B = 5140.759177 C = 6381.345133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.125 3.875 3 N -0.621 5.621 4 C 0.118 3.882 5 C -0.121 4.121 6 H 0.110 0.890 7 C 0.533 3.467 8 O -0.530 6.530 9 N -0.589 5.589 10 C 0.106 3.894 11 C -0.123 4.123 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.144 4.144 15 C 0.178 3.822 16 N -0.588 5.588 17 C -0.214 4.214 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.924 5.924 21 Si 0.900 3.100 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.154 3.846 26 H 0.026 0.974 27 C 0.114 3.886 28 C -0.144 4.144 29 C 0.523 3.477 30 O -0.533 6.533 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.045 0.955 45 H 0.040 0.960 46 H 0.250 0.750 47 H 0.096 0.904 48 H 0.055 0.945 49 H 0.121 0.879 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.440 -9.020 3.438 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 N -0.356 5.356 4 C -0.005 4.005 5 C -0.143 4.143 6 H 0.128 0.872 7 C 0.319 3.681 8 O -0.406 6.406 9 N -0.322 5.322 10 C -0.018 4.018 11 C -0.161 4.161 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.183 4.183 15 C 0.053 3.947 16 N -0.314 5.314 17 C -0.342 4.342 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.572 5.572 21 Si 0.731 3.269 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.045 3.955 26 H 0.043 0.957 27 C -0.009 4.009 28 C -0.185 4.185 29 C 0.311 3.689 30 O -0.410 6.410 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.114 0.886 48 H 0.073 0.927 49 H 0.139 0.861 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.610 -9.380 3.232 16.045 hybrid contribution -0.905 -0.227 0.225 0.960 sum 11.705 -9.607 3.458 15.532 Atomic orbital electron populations 1.22181 0.95745 1.02130 1.03030 1.21311 0.94549 0.81022 1.02809 1.48356 1.65946 1.13904 1.07363 1.21990 1.00860 0.90963 0.86717 1.22178 1.01737 0.94581 0.95761 0.87168 1.19747 0.81217 0.83944 0.83158 1.90701 1.31085 1.84740 1.34093 1.47725 1.36636 1.09168 1.38634 1.21881 0.89971 1.00082 0.89816 1.21927 1.02518 0.94520 0.97169 1.22370 0.97324 0.95379 0.97043 0.90667 1.23161 0.99123 0.98181 0.97785 1.21219 0.89240 0.96394 0.87822 1.44280 1.06098 1.66354 1.14633 1.19007 0.87216 1.28452 0.99505 0.90089 1.24693 0.97842 1.01219 0.96520 1.69950 1.27087 1.49924 1.10223 0.86263 0.83492 0.79347 0.77802 1.21803 1.21939 1.20314 1.20687 0.87553 0.94808 0.92431 0.95696 1.21405 1.01102 0.83675 0.94687 1.22450 1.04751 0.96743 0.94508 1.20816 0.76531 0.87237 0.84319 1.90709 1.54033 1.75149 1.21083 0.92081 0.91559 0.92108 0.90120 0.90441 0.88808 0.90090 0.91640 0.90269 0.89931 0.91998 0.92309 0.92782 0.93681 0.94143 0.94009 0.88609 0.92709 0.86100 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.12 1.36 6.65 -4.04 -0.03 1.34 16 3 N -0.62 -8.27 2.93 -172.41 -0.51 -8.77 16 4 C 0.12 1.48 6.71 -3.12 -0.02 1.46 16 5 C -0.12 -1.52 2.51 -90.14 -0.23 -1.75 16 6 H 0.11 1.03 7.75 -51.93 -0.40 0.63 16 7 C 0.53 8.78 6.99 -10.98 -0.08 8.70 16 8 O -0.53 -10.81 14.96 5.56 0.08 -10.73 16 9 N -0.59 -9.13 2.96 -173.81 -0.51 -9.65 16 10 C 0.11 1.27 6.05 -3.52 -0.02 1.24 16 11 C -0.12 -1.72 5.06 -26.51 -0.13 -1.86 16 12 C -0.10 -1.55 3.68 -88.43 -0.33 -1.88 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.14 -2.50 6.33 -24.32 -0.15 -2.65 16 15 C 0.18 4.10 4.62 -2.74 -0.01 4.09 16 16 N -0.59 -13.93 3.20 -164.44 -0.53 -14.45 16 17 C -0.21 -5.77 9.70 -15.06 -0.15 -5.91 16 18 H 0.08 2.24 6.51 -52.48 -0.34 1.90 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.09 10.38 55.49 0.58 -26.51 16 21 Si 0.90 23.11 29.55 -169.99 -5.02 18.08 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.15 2.88 2.97 -68.32 -0.20 2.67 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 C 0.11 1.96 5.68 -4.79 -0.03 1.94 16 28 C -0.14 -2.06 5.50 -26.75 -0.15 -2.20 16 29 C 0.52 8.29 8.02 -10.87 -0.09 8.20 16 30 O -0.53 -10.22 17.59 5.55 0.10 -10.13 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.43 6.96 -51.93 -0.36 1.07 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.80 4.40 -51.93 -0.23 0.57 16 40 H 0.08 1.47 6.85 -51.93 -0.36 1.11 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 1.16 7.04 -51.93 -0.37 0.80 16 45 H 0.04 1.06 7.56 -51.93 -0.39 0.67 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.10 1.96 5.53 -51.93 -0.29 1.67 16 48 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 49 H 0.12 2.16 7.89 -51.93 -0.41 1.75 16 50 H 0.11 1.29 6.81 -51.93 -0.35 0.93 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -33.97 380.15 -9.52 -43.48 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.11 Total: 1.42 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.32 Total: 11.52 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.97 Total: -59.38 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.18 Total: -20.85 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.97 -9.52 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084952799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.132 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds