Wall clock time and date at job start Tue Mar 31 2020 19:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46763 * 124.34806 * 90.00467 * 3 2 1 5 5 C 1.54480 * 105.47393 * 162.98185 * 4 3 2 6 6 H 1.09001 * 110.96462 * 267.29191 * 5 4 3 7 7 C 1.50700 * 110.96597 * 143.56793 * 5 4 3 8 8 O 1.21277 * 120.00417 * 0.02562 * 7 5 4 9 9 N 1.34779 * 119.99382 * 179.97438 * 7 5 4 10 10 C 1.47148 * 121.21799 * 359.72157 * 9 7 5 11 11 C 1.53329 * 107.71927 * 122.68843 * 10 9 7 12 12 C 1.53101 * 110.49876 * 57.57054 * 11 10 9 13 13 H 1.09004 * 113.05293 * 70.87124 * 12 11 10 14 14 C 1.56028 * 106.39504 * 195.29124 * 12 11 10 15 15 C 1.54504 * 102.60829 * 78.38301 * 14 12 11 16 16 N 1.47436 * 107.15214 * 22.84428 * 15 14 12 17 17 C 1.36929 * 126.06330 * 181.59199 * 16 15 14 18 18 H 1.08006 * 120.00230 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00173 * 0.03494 * 17 16 15 20 20 N 1.31621 * 119.99658 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00140 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47053 * 90.00096 * 21 19 17 23 23 H 1.48504 * 109.47125 * 210.00102 * 21 19 17 24 24 H 1.48496 * 109.47182 * 329.99917 * 21 19 17 25 25 C 1.46473 * 107.87433 * 1.62267 * 16 15 14 26 26 H 1.08995 * 108.41956 * 89.24291 * 25 16 15 27 27 C 1.46759 * 121.21123 * 179.97438 * 9 7 5 28 28 C 1.54629 * 101.76319 * 25.41207 * 5 4 3 29 29 C 1.34415 * 124.35240 * 269.70019 * 3 2 1 30 30 O 1.21285 * 124.93848 * 0.38955 * 29 3 2 31 31 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 32 32 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 34 34 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 35 35 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 36 36 H 1.09006 * 110.24107 * 281.97891 * 4 3 2 37 37 H 1.09004 * 110.24649 * 43.97662 * 4 3 2 38 38 H 1.09000 * 109.76174 * 242.33797 * 10 9 7 39 39 H 1.09003 * 109.75911 * 3.09151 * 10 9 7 40 40 H 1.09005 * 109.39931 * 297.25025 * 11 10 9 41 41 H 1.09000 * 109.19652 * 177.77052 * 11 10 9 42 42 H 1.08993 * 110.78297 * 320.10611 * 14 12 11 43 43 H 1.08995 * 110.94086 * 196.73490 * 14 12 11 44 44 H 1.08997 * 109.90726 * 263.45833 * 15 14 12 45 45 H 1.09002 * 110.04785 * 142.30276 * 15 14 12 46 46 H 0.97004 * 120.00007 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.23062 * 352.84142 * 27 9 7 48 48 H 1.09009 * 109.22655 * 112.23851 * 27 9 7 49 49 H 1.09000 * 110.48716 * 93.88350 * 28 5 4 50 50 H 1.09002 * 110.48668 * 216.39059 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1745 3.3441 0.7487 6 1 4.2332 3.1033 0.8449 7 6 2.8380 4.5986 1.5131 8 8 1.9723 4.5776 2.3622 9 7 3.4999 5.7436 1.2536 10 6 4.5598 5.7977 0.2343 11 6 4.1689 6.8706 -0.7889 12 6 3.9728 8.2232 -0.0991 13 1 4.9073 8.6661 0.2455 14 6 3.2112 9.1296 -1.1154 15 6 1.7546 8.6308 -0.9865 16 7 1.6296 7.9908 0.3359 17 6 0.5067 7.3883 0.8369 18 1 0.5242 6.9485 1.8232 19 6 -0.6542 7.3425 0.0771 20 7 -0.6753 7.8779 -1.1251 21 14 -2.1862 6.5212 0.7609 22 1 -3.0008 7.5243 1.4928 23 1 -2.9846 5.9549 -0.3559 24 1 -1.7913 5.4316 1.6893 25 6 2.9194 8.1145 1.0189 26 1 2.9256 9.0512 1.5762 27 6 3.1936 6.9807 1.9814 28 6 2.7695 3.4754 -0.7378 29 6 2.2766 2.0945 -1.1097 30 8 2.1329 1.6904 -2.2442 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 1.3637 2.5308 1.6429 37 1 2.8324 1.5530 1.9383 38 1 5.5086 6.0596 0.7027 39 1 4.6465 4.8295 -0.2588 40 1 3.2407 6.5803 -1.2812 41 1 4.9584 6.9587 -1.5352 42 1 3.5849 8.9745 -2.1275 43 1 3.2867 10.1798 -0.8335 44 1 1.5397 7.9057 -1.7714 45 1 1.0641 9.4711 -1.0587 46 1 -1.4866 7.8463 -1.6560 47 1 2.3157 6.8210 2.6073 48 1 4.0417 7.2448 2.6133 49 1 1.9745 4.2122 -0.8530 50 1 3.6322 3.7483 -1.3456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084952799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:10 Heat of formation + Delta-G solvation = -54.410291 kcal Electronic energy + Delta-G solvation = -31926.935383 eV Core-core repulsion = 27953.955336 eV Total energy + Delta-G solvation = -3972.980047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05826 -40.93043 -39.53534 -37.44181 -36.53966 -34.97733 -34.62006 -32.78032 -31.30759 -30.22683 -29.96805 -28.78532 -26.50050 -26.01412 -24.53139 -23.84182 -23.42049 -21.72615 -21.07272 -20.34149 -19.56040 -18.60738 -18.41604 -17.81037 -17.11678 -16.92222 -16.61294 -16.23312 -16.05217 -15.96627 -15.57687 -15.12967 -14.98948 -14.72349 -14.61526 -14.45722 -14.26933 -14.04647 -13.96774 -13.57087 -13.29049 -13.17384 -13.05032 -13.01483 -12.87321 -12.67034 -12.53444 -12.48644 -12.42994 -12.24590 -12.07859 -12.04542 -11.64477 -11.35679 -11.23127 -11.12931 -11.07501 -10.66836 -10.59323 -9.82360 -9.43758 -8.79027 -7.84084 -5.12901 1.32753 1.35082 1.40645 1.44171 1.67491 1.87118 2.21470 2.45990 3.13831 3.33110 3.35507 3.55383 3.70946 3.83677 3.92073 3.95807 4.05751 4.09167 4.17227 4.19265 4.34528 4.41156 4.45545 4.50965 4.55374 4.59191 4.66144 4.68564 4.73684 4.74950 4.78502 4.85670 4.92355 4.93917 4.98138 5.07567 5.18927 5.19687 5.20731 5.37212 5.52133 5.55583 5.69613 5.75300 5.76128 5.84276 5.97406 6.23912 6.60525 7.01965 7.15322 7.31118 7.84882 8.47952 9.26509 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.005445 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.170377 B = 5140.759177 C = 6381.345133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.119 3.881 3 N -0.614 5.614 4 C 0.118 3.882 5 C -0.105 4.105 6 H 0.163 0.837 7 C 0.523 3.477 8 O -0.580 6.580 9 N -0.591 5.591 10 C 0.104 3.896 11 C -0.123 4.123 12 C -0.083 4.083 13 H 0.124 0.876 14 C -0.131 4.131 15 C 0.186 3.814 16 N -0.604 5.604 17 C -0.193 4.193 18 H 0.070 0.930 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.947 3.053 22 H -0.286 1.286 23 H -0.299 1.299 24 H -0.282 1.282 25 C 0.141 3.859 26 H 0.024 0.976 27 C 0.119 3.881 28 C -0.136 4.136 29 C 0.514 3.486 30 O -0.574 6.574 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.006 0.994 45 H -0.006 1.006 46 H 0.240 0.760 47 H 0.053 0.947 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.038 -10.152 4.595 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.002 4.002 3 N -0.347 5.347 4 C -0.005 4.005 5 C -0.126 4.126 6 H 0.180 0.820 7 C 0.311 3.689 8 O -0.461 6.461 9 N -0.322 5.322 10 C -0.017 4.017 11 C -0.161 4.161 12 C -0.102 4.102 13 H 0.141 0.859 14 C -0.170 4.170 15 C 0.061 3.939 16 N -0.329 5.329 17 C -0.323 4.323 18 H 0.088 0.912 19 C -0.258 4.258 20 N -0.600 5.600 21 Si 0.778 3.222 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.208 1.208 25 C 0.034 3.966 26 H 0.042 0.958 27 C -0.005 4.005 28 C -0.177 4.177 29 C 0.303 3.697 30 O -0.455 6.455 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.053 0.947 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.024 0.976 45 H 0.013 0.987 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.115 0.885 49 H 0.093 0.907 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.259 -10.506 4.429 20.685 hybrid contribution -2.345 0.164 -0.065 2.352 sum 14.914 -10.342 4.364 18.666 Atomic orbital electron populations 1.22172 0.96435 1.03345 1.00922 1.21584 0.93970 0.79960 1.04689 1.48502 1.64644 1.14676 1.06881 1.22057 0.99966 0.91592 0.86891 1.22218 1.04507 0.92581 0.93340 0.82001 1.20420 0.80406 0.85308 0.82788 1.90683 1.33165 1.85689 1.36514 1.47899 1.37136 1.08208 1.38987 1.22215 0.90141 1.00711 0.88666 1.21917 1.01607 0.94278 0.98317 1.22426 0.97521 0.95905 0.94350 0.85856 1.23029 0.94888 0.99077 0.99965 1.20952 0.92629 0.93679 0.86644 1.44466 1.07417 1.65674 1.15340 1.19059 0.88352 1.26330 0.98587 0.91204 1.25260 1.00170 1.03145 0.97224 1.70140 1.26793 1.51955 1.11119 0.85511 0.81401 0.78468 0.76830 1.21304 1.22639 1.20797 1.21022 0.86312 0.95371 0.93886 0.95814 1.21240 1.01099 0.83926 0.94255 1.22329 1.04226 0.94707 0.96405 1.21081 0.76438 0.87894 0.84286 1.90679 1.56023 1.76052 1.22705 0.95427 0.88748 0.92865 0.90186 0.86500 0.92159 0.85935 0.87285 0.88040 0.94699 0.88174 0.90248 0.91641 0.97575 0.98738 0.95086 0.92874 0.88519 0.90682 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 10.24 71.98 0.74 -3.07 16 2 C 0.12 2.38 6.65 86.38 0.57 2.95 16 3 N -0.61 -15.58 2.93 -817.98 -2.40 -17.98 16 4 C 0.12 2.73 6.71 86.83 0.58 3.32 16 5 C -0.11 -2.39 2.51 -10.48 -0.03 -2.41 16 6 H 0.16 2.07 7.75 -2.39 -0.02 2.05 16 7 C 0.52 16.63 6.99 87.66 0.61 17.24 16 8 O -0.58 -24.18 14.96 -3.02 -0.05 -24.22 16 9 N -0.59 -16.86 2.96 -822.21 -2.44 -19.29 16 10 C 0.10 1.96 6.05 86.37 0.52 2.48 16 11 C -0.12 -2.97 5.06 30.74 0.16 -2.81 16 12 C -0.08 -2.21 3.68 -9.38 -0.03 -2.24 16 13 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 14 C -0.13 -4.30 6.33 32.15 0.20 -4.10 16 15 C 0.19 8.93 4.62 86.71 0.40 9.33 16 16 N -0.60 -29.50 3.20 -674.18 -2.15 -31.66 16 17 C -0.19 -10.97 9.70 84.04 0.81 -10.15 16 18 H 0.07 4.08 6.51 -2.91 -0.02 4.06 16 19 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 20 N -0.95 -59.35 10.38 21.65 0.22 -59.13 16 21 Si 0.95 50.29 29.55 68.60 2.03 52.32 16 22 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 23 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 24 H -0.28 -15.00 7.11 99.48 0.71 -14.29 16 25 C 0.14 5.07 2.97 44.75 0.13 5.21 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 C 0.12 3.85 5.68 85.75 0.49 4.34 16 28 C -0.14 -3.79 5.50 30.58 0.17 -3.62 16 29 C 0.51 16.19 8.02 87.89 0.70 16.90 16 30 O -0.57 -22.42 17.59 -3.04 -0.05 -22.47 16 31 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.66 7.92 -2.39 -0.02 1.64 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.86 6.96 -2.38 -0.02 1.84 16 37 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.49 4.40 -2.39 -0.01 1.48 16 40 H 0.03 1.20 6.85 -2.38 -0.02 1.18 16 41 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.30 7.97 -2.39 -0.02 2.28 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.01 0.33 7.04 -2.39 -0.02 0.31 16 45 H -0.01 -0.32 7.56 -2.39 -0.02 -0.34 16 46 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.05 2.20 5.53 -2.39 -0.01 2.19 16 48 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 49 H 0.07 2.84 7.89 -2.39 -0.02 2.82 16 50 H 0.13 2.90 6.81 -2.39 -0.02 2.88 16 Total: -1.00 -85.08 380.15 2.60 -82.48 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.93 Total: 10.06 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 6.50 Total: 29.89 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -6.76 Total: -128.06 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.10 Total: -46.70 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.03 Total: 52.32 kcal Total: -85.08 2.60 -82.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084952799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.073 kcal (2) G-P(sol) polarization free energy of solvation -85.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds