Wall clock time and date at job start Tue Mar 31 2020 19:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47051 * 2 1 4 4 C 1.46768 * 124.34983 * 90.00227 * 3 2 1 5 5 C 1.54485 * 105.47294 * 197.01620 * 4 3 2 6 6 H 1.08995 * 110.96866 * 92.73779 * 5 4 3 7 7 C 1.50696 * 110.96626 * 216.46448 * 5 4 3 8 8 O 1.21278 * 120.00492 * 359.97438 * 7 5 4 9 9 N 1.34776 * 119.99750 * 179.97438 * 7 5 4 10 10 C 1.47382 * 125.74091 * 179.97438 * 9 7 5 11 11 C 1.55410 * 106.74119 * 179.06281 * 10 9 7 12 12 H 1.08999 * 112.76405 * 146.41441 * 11 10 9 13 13 C 1.52913 * 106.56834 * 271.00493 * 11 10 9 14 14 C 1.51565 * 111.66732 * 169.87799 * 13 11 10 15 15 N 1.44351 * 113.01730 * 320.11774 * 14 13 11 16 16 C 1.36938 * 116.42867 * 188.02380 * 15 14 13 17 17 H 1.07995 * 120.00020 * 152.27439 * 16 15 14 18 18 C 1.38816 * 119.99548 * 332.27444 * 16 15 14 19 19 N 1.31611 * 120.00277 * 336.17510 * 18 16 15 20 20 Si 1.86802 * 119.99598 * 156.17488 * 18 16 15 21 21 H 1.48494 * 109.47084 * 59.99894 * 20 18 16 22 22 H 1.48506 * 109.47047 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47025 * 299.99856 * 20 18 16 24 24 C 1.43982 * 127.14790 * 8.04177 * 15 14 13 25 25 C 1.49780 * 116.29709 * 2.85426 * 24 15 14 26 26 H 1.09004 * 108.75226 * 141.02272 * 25 24 15 27 27 C 1.47934 * 125.74367 * 359.69591 * 9 7 5 28 28 C 1.54624 * 101.76198 * 334.58132 * 5 4 3 29 29 C 1.34423 * 124.35044 * 269.70078 * 3 2 1 30 30 O 1.21278 * 124.93883 * 359.57259 * 29 3 2 31 31 H 1.09001 * 109.47000 * 60.00221 * 1 2 3 32 32 H 1.09000 * 109.47031 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47183 * 300.00004 * 1 2 3 34 34 H 1.08996 * 109.47240 * 120.00199 * 2 1 3 35 35 H 1.08996 * 109.47183 * 239.99996 * 2 1 3 36 36 H 1.09002 * 110.24102 * 316.01349 * 4 3 2 37 37 H 1.09002 * 110.24669 * 77.92653 * 4 3 2 38 38 H 1.09002 * 110.00622 * 298.38513 * 10 9 7 39 39 H 1.09000 * 110.00720 * 59.69886 * 10 9 7 40 40 H 1.08997 * 109.03706 * 290.43361 * 13 11 10 41 41 H 1.08998 * 109.04447 * 49.30974 * 13 11 10 42 42 H 1.09000 * 108.77343 * 199.20684 * 14 13 11 43 43 H 1.08995 * 108.77915 * 81.03275 * 14 13 11 44 44 H 0.97001 * 120.00456 * 180.02562 * 19 18 16 45 45 H 1.08996 * 108.11920 * 241.07649 * 24 15 14 46 46 H 1.09002 * 107.94989 * 124.49640 * 24 15 14 47 47 H 1.09001 * 110.56466 * 274.14523 * 27 9 7 48 48 H 1.09002 * 110.56132 * 36.99567 * 27 9 7 49 49 H 1.09011 * 110.48667 * 143.47713 * 28 5 4 50 50 H 1.08999 * 110.48923 * 265.98694 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 2.3528 3.6346 0.7487 6 1 1.3782 4.1129 0.8454 7 6 3.4036 4.3986 1.5123 8 8 4.0642 3.8381 2.3610 9 7 3.6093 5.7050 1.2521 10 6 4.5980 6.5704 1.9196 11 6 4.4762 7.9754 1.2666 12 1 4.6685 8.7855 1.9700 13 6 5.4275 7.9838 0.0694 14 6 5.2234 9.2092 -0.7989 15 7 3.8331 9.5636 -0.9572 16 6 3.5556 10.5533 -1.8620 17 1 2.5988 10.5747 -2.3624 18 6 4.5042 11.5290 -2.1360 19 7 5.4382 11.8058 -1.2510 20 14 4.4551 12.4491 -3.7610 21 1 3.1593 13.1633 -3.8864 22 1 5.5685 13.4307 -3.8078 23 1 4.5991 11.4843 -4.8807 24 6 2.7060 8.9911 -0.2681 25 6 3.0179 7.9560 0.7686 26 1 2.3479 8.0965 1.6169 27 6 2.8845 6.5100 0.2446 28 6 2.7503 3.4821 -0.7378 29 6 2.2765 2.0944 -1.1098 30 8 2.1462 1.6856 -2.2441 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.4932 2.0266 1.9383 37 1 3.2493 1.8628 1.6438 38 1 4.3786 6.6343 2.9854 39 1 5.6023 6.1743 1.7690 40 1 6.4554 7.9722 0.4320 41 1 5.2530 7.0902 -0.5298 42 1 5.6506 9.0168 -1.7831 43 1 5.7507 10.0501 -0.3486 44 1 6.1008 12.4879 -1.4422 45 1 2.0483 8.5395 -1.0107 46 1 2.1609 9.8016 0.2157 47 1 3.3533 6.4101 -0.7345 48 1 1.8363 6.2143 0.2002 49 1 2.2490 4.2352 -1.3460 50 1 3.8316 3.5578 -0.8533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087985678.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:28 Heat of formation + Delta-G solvation = -56.673797 kcal Electronic energy + Delta-G solvation = -30213.955258 eV Core-core repulsion = 26240.877058 eV Total energy + Delta-G solvation = -3973.078200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08828 -41.12527 -39.66289 -37.52013 -37.18518 -35.01902 -34.15955 -33.07734 -31.99128 -30.79967 -29.22453 -28.77488 -27.15993 -25.72847 -24.50252 -23.86705 -23.43271 -22.62477 -20.53386 -20.14735 -19.33845 -18.92041 -18.44857 -17.89339 -17.15775 -17.03901 -16.78237 -16.52917 -15.99171 -15.70037 -15.55209 -15.32845 -15.05833 -14.84487 -14.71313 -14.66423 -14.34969 -14.26959 -13.98857 -13.63774 -13.53952 -13.35154 -13.32713 -12.93522 -12.84536 -12.80011 -12.53735 -12.49004 -12.41426 -12.20198 -12.03480 -12.01116 -11.75357 -11.47976 -11.27430 -11.16537 -11.14582 -10.79482 -10.49353 -9.80032 -9.69047 -8.61628 -7.65602 -5.36381 1.42330 1.47373 1.50409 1.50981 1.56689 1.75686 2.05442 2.53365 3.06003 3.25264 3.28420 3.43752 3.51821 3.75664 3.80938 3.83473 3.85946 4.06412 4.12619 4.18381 4.24410 4.37632 4.47264 4.50991 4.53390 4.55420 4.59242 4.66829 4.68405 4.73156 4.80327 4.82588 4.89499 4.95273 4.97329 5.04114 5.08876 5.12256 5.24486 5.28091 5.33172 5.38479 5.47023 5.53597 5.72533 5.99232 6.00661 6.45958 6.48151 7.01661 7.05948 7.25696 8.10173 8.27538 9.14965 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002742 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.092827 B =10209.712394 C =11181.222398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.120 3.880 5 C -0.108 4.108 6 H 0.148 0.852 7 C 0.543 3.457 8 O -0.572 6.572 9 N -0.609 5.609 10 C 0.118 3.882 11 C -0.078 4.078 12 H 0.093 0.907 13 C -0.110 4.110 14 C 0.163 3.837 15 N -0.597 5.597 16 C -0.282 4.282 17 H 0.064 0.936 18 C -0.043 4.043 19 N -0.917 5.917 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.284 1.284 24 C 0.173 3.827 25 C -0.096 4.096 26 H 0.098 0.902 27 C 0.111 3.889 28 C -0.140 4.140 29 C 0.514 3.486 30 O -0.576 6.576 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.056 0.944 42 H -0.013 1.013 43 H 0.046 0.954 44 H 0.249 0.751 45 H 0.026 0.974 46 H 0.009 0.991 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.124 0.876 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -20.013 8.972 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.348 5.348 4 C -0.002 4.002 5 C -0.130 4.130 6 H 0.165 0.835 7 C 0.332 3.668 8 O -0.452 6.452 9 N -0.341 5.341 10 C -0.004 4.004 11 C -0.098 4.098 12 H 0.111 0.889 13 C -0.148 4.148 14 C 0.038 3.962 15 N -0.321 5.321 16 C -0.412 4.412 17 H 0.082 0.918 18 C -0.240 4.240 19 N -0.562 5.562 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.210 1.210 24 C 0.047 3.953 25 C -0.115 4.115 26 H 0.116 0.884 27 C -0.010 4.010 28 C -0.180 4.180 29 C 0.302 3.698 30 O -0.456 6.456 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.005 0.995 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.027 0.973 47 H 0.088 0.912 48 H 0.128 0.872 49 H 0.142 0.858 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.466 -20.656 8.929 24.043 hybrid contribution 0.526 1.097 -1.170 1.688 sum -7.940 -19.559 7.759 22.490 Atomic orbital electron populations 1.22103 0.94626 1.03379 1.01982 1.21554 0.95250 0.80075 1.03813 1.48511 1.64632 1.14660 1.06951 1.22049 1.03967 0.87509 0.86718 1.22175 1.00438 0.96451 0.93897 0.83481 1.20021 0.83873 0.80239 0.82656 1.90704 1.50504 1.68292 1.35724 1.48672 1.38067 1.08801 1.38581 1.22273 0.92344 0.88840 0.96971 1.21989 0.95162 0.95906 0.96701 0.88855 1.21510 0.99318 0.97701 0.96292 1.19982 0.85059 0.95780 0.95376 1.42903 1.02085 1.40718 1.46413 1.19406 1.01970 1.04025 1.15832 0.91819 1.25667 0.99409 0.98145 1.00784 1.70130 1.19398 1.32892 1.33768 0.85512 0.77156 0.77900 0.80964 1.19938 1.22106 1.21005 1.19379 0.89258 0.93722 0.92917 1.21561 0.97310 0.93884 0.98722 0.88390 1.22598 0.98257 0.88910 0.91283 1.22320 1.04207 0.95729 0.95769 1.21096 0.75997 0.88462 0.84214 1.90710 1.55577 1.76428 1.22896 0.94330 0.89709 0.91167 0.87693 0.91410 0.87028 0.90055 0.90602 0.91582 0.91458 0.92535 0.99521 0.93689 0.94166 0.95670 0.97251 0.91189 0.87152 0.85802 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.24 71.98 0.74 -1.08 16 2 C 0.11 1.53 6.66 86.38 0.57 2.10 16 3 N -0.61 -10.41 2.93 -817.97 -2.40 -12.81 16 4 C 0.12 1.65 6.71 86.83 0.58 2.23 16 5 C -0.11 -1.56 2.78 -10.48 -0.03 -1.59 16 6 H 0.15 1.32 7.75 -2.39 -0.02 1.30 16 7 C 0.54 11.35 7.11 87.66 0.62 11.98 16 8 O -0.57 -15.73 15.84 -3.02 -0.05 -15.78 16 9 N -0.61 -12.98 3.34 -808.44 -2.70 -15.68 16 10 C 0.12 2.79 6.24 87.04 0.54 3.33 16 11 C -0.08 -2.20 3.65 -9.62 -0.04 -2.24 16 12 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 13 C -0.11 -3.70 4.78 30.09 0.14 -3.56 16 14 C 0.16 7.50 5.11 86.31 0.44 7.94 16 15 N -0.60 -28.06 3.23 -722.45 -2.33 -30.39 16 16 C -0.28 -15.02 9.26 84.03 0.78 -14.25 16 17 H 0.06 3.33 7.93 -2.91 -0.02 3.31 16 18 C -0.04 -2.35 4.96 84.86 0.42 -1.93 16 19 N -0.92 -52.67 10.90 21.65 0.24 -52.43 16 20 Si 0.96 44.21 29.62 68.60 2.03 46.25 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 C 0.17 6.30 5.75 85.81 0.49 6.80 16 25 C -0.10 -2.53 2.84 -10.98 -0.03 -2.56 16 26 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 27 C 0.11 2.30 4.73 86.57 0.41 2.71 16 28 C -0.14 -2.47 5.72 30.59 0.17 -2.29 16 29 C 0.51 11.69 8.02 87.90 0.71 12.40 16 30 O -0.58 -18.21 17.59 -3.02 -0.05 -18.26 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.12 7.92 -2.39 -0.02 1.11 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.37 6.97 -2.39 -0.02 1.36 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.64 7.79 -2.39 -0.02 1.62 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 1.80 6.60 -2.39 -0.02 1.79 16 42 H -0.01 -0.68 8.11 -2.39 -0.02 -0.70 16 43 H 0.05 2.43 5.78 -2.39 -0.01 2.42 16 44 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.03 0.88 7.81 -2.39 -0.02 0.86 16 46 H 0.01 0.37 8.13 -2.39 -0.02 0.35 16 47 H 0.07 1.65 7.16 -2.39 -0.02 1.63 16 48 H 0.11 1.57 7.43 -2.39 -0.02 1.55 16 49 H 0.12 1.94 8.00 -2.38 -0.02 1.92 16 50 H 0.10 1.97 7.89 -2.39 -0.02 1.95 16 Total: -1.00 -72.04 386.17 2.19 -69.85 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.92 Total: 9.26 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.53 Total: 20.00 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -7.19 Total: -111.32 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.10 Total: -34.04 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.04 2.19 -69.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087985678.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.178 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds