Wall clock time and date at job start Tue Mar 31 2020 18:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46609 * 2 1 4 4 C 1.47201 * 109.46931 * 120.00175 * 2 1 3 5 5 N 2.60799 * 109.47023 * 120.00153 * 2 1 3 6 6 C 1.50701 * 109.46878 * 240.00219 * 2 1 3 7 7 O 1.21274 * 120.00049 * 263.40455 * 6 2 1 8 8 N 1.34776 * 119.99943 * 83.41284 * 6 2 1 9 9 C 1.46931 * 120.63187 * 4.77056 * 8 6 2 10 10 C 1.52754 * 109.00920 * 233.58681 * 9 8 6 11 11 C 1.53044 * 109.38466 * 305.58985 * 10 9 8 12 12 C 1.52998 * 109.46018 * 181.26211 * 11 10 9 13 13 O 1.42900 * 109.47160 * 64.93051 * 12 11 10 14 14 C 1.42904 * 113.99955 * 179.97438 * 13 12 11 15 15 H 1.09002 * 110.88478 * 26.11533 * 14 13 12 16 16 C 1.55154 * 111.00648 * 149.99730 * 14 13 12 17 17 C 1.54326 * 102.94368 * 153.57653 * 16 14 13 18 18 N 1.47023 * 107.26736 * 337.80859 * 17 16 14 19 19 C 1.36940 * 125.64469 * 178.96083 * 18 17 16 20 20 H 1.08000 * 120.00233 * 179.97438 * 19 18 17 21 21 C 1.38820 * 119.99866 * 359.97438 * 19 18 17 22 22 N 1.31617 * 120.00026 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47119 * 59.99650 * 23 21 19 25 25 H 1.48501 * 109.47079 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46956 * 300.00293 * 23 21 19 27 27 C 1.47422 * 108.70536 * 358.93950 * 18 17 16 28 28 C 1.53034 * 109.53901 * 61.23757 * 11 10 9 29 29 C 1.46920 * 120.63306 * 185.05473 * 8 6 2 30 30 H 1.08996 * 109.47094 * 295.20334 * 1 2 3 31 31 H 1.08998 * 109.46790 * 55.20214 * 1 2 3 32 32 H 1.08994 * 109.47012 * 175.20149 * 1 2 3 33 33 H 1.09003 * 109.58260 * 353.42000 * 9 8 6 34 34 H 1.09003 * 109.58517 * 113.84381 * 9 8 6 35 35 H 1.09000 * 109.56693 * 185.55462 * 10 9 8 36 36 H 1.09000 * 109.36373 * 65.49686 * 10 9 8 37 37 H 1.09000 * 109.45707 * 301.21656 * 11 10 9 38 38 H 1.09000 * 109.46931 * 184.93004 * 12 11 10 39 39 H 1.08999 * 109.47046 * 304.92661 * 12 11 10 40 40 H 1.09003 * 110.72500 * 271.94185 * 16 14 13 41 41 H 1.08997 * 110.72084 * 35.03796 * 16 14 13 42 42 H 1.08997 * 109.88183 * 97.22510 * 17 16 14 43 43 H 1.09004 * 109.88254 * 218.23542 * 17 16 14 44 44 H 0.96999 * 119.99834 * 180.02562 * 22 21 19 45 45 H 1.08990 * 110.36417 * 265.28630 * 27 18 17 46 46 H 1.09000 * 110.36264 * 142.96620 * 27 18 17 47 47 H 1.08995 * 109.49861 * 178.68472 * 28 11 10 48 48 H 1.08999 * 109.52034 * 58.60560 * 28 11 10 49 49 H 1.08999 * 109.59086 * 246.15448 * 29 8 6 50 50 H 1.09007 * 109.58424 * 6.57295 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3994 -1.2295 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.3482 -1.8797 -1.1692 8 7 2.1307 -0.0462 -2.3991 9 6 1.8520 1.3949 -2.4669 10 6 0.8087 1.6493 -3.5533 11 6 1.2892 1.0389 -4.8719 12 6 0.2600 1.3200 -5.9686 13 8 0.1888 2.7275 -6.2055 14 6 -0.7482 3.0997 -7.2183 15 1 -1.5413 2.3571 -7.3058 16 6 -1.3343 4.5095 -6.9427 17 6 -1.7206 5.0049 -8.3523 18 7 -0.9181 4.2408 -9.3185 19 6 -0.9774 4.3658 -10.6809 20 1 -0.3432 3.7560 -11.3073 21 6 -1.8527 5.2764 -11.2569 22 7 -2.6252 6.0199 -10.4936 23 14 -1.9331 5.4474 -13.1153 24 1 -2.3225 4.1462 -13.7158 25 1 -2.9395 6.4787 -13.4744 26 1 -0.6017 5.8527 -13.6332 27 6 -0.0386 3.3182 -8.5778 28 6 1.4565 -0.4731 -4.7051 29 6 2.5126 -0.7504 -3.6307 30 1 -0.3633 0.4376 0.9298 31 1 -0.3633 0.5865 -0.8439 32 1 -0.3633 -1.0240 -0.0860 33 1 1.4684 1.7384 -1.5062 34 1 2.7680 1.9331 -2.7106 35 1 0.6674 2.7227 -3.6794 36 1 -0.1356 1.1893 -3.2623 37 1 2.2457 1.4817 -5.1497 38 1 0.5583 0.8119 -6.8856 39 1 -0.7170 0.9549 -5.6522 40 1 -2.2142 4.4431 -6.3027 41 1 -0.5821 5.1592 -6.4954 42 1 -2.7814 4.8282 -8.5295 43 1 -1.5018 6.0688 -8.4442 44 1 -3.2371 6.6559 -10.8961 45 1 0.9420 3.7689 -8.4259 46 1 0.0560 2.3731 -9.1126 47 1 1.7762 -0.9103 -5.6509 48 1 0.5062 -0.9136 -4.4035 49 1 3.4835 -0.3908 -3.9713 50 1 2.5648 -1.8220 -3.4376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088230147.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:23 Heat of formation + Delta-G solvation = -53.700206 kcal Electronic energy + Delta-G solvation = -28822.719188 eV Core-core repulsion = 24849.769933 eV Total energy + Delta-G solvation = -3972.949255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55846 -39.94184 -38.86830 -37.70662 -37.25882 -34.99801 -34.24920 -33.57167 -31.86472 -31.05644 -29.09543 -28.18107 -26.39040 -26.03683 -24.25709 -24.07869 -22.03384 -21.98580 -21.68103 -20.28542 -18.93674 -18.61496 -18.50252 -17.78449 -16.69772 -16.60490 -16.55470 -16.12739 -16.05426 -15.46919 -15.42945 -15.20347 -15.00912 -14.59374 -14.37490 -14.20139 -14.11585 -13.97195 -13.78478 -13.72881 -13.65082 -13.31294 -13.16824 -12.98158 -12.89021 -12.74750 -12.65474 -12.42826 -12.26417 -12.12573 -12.07134 -12.05287 -11.79164 -11.54961 -11.50849 -11.40258 -11.27879 -10.79436 -10.69150 -10.32064 -9.68951 -8.89973 -7.84236 -5.20618 1.35031 1.43694 1.47554 1.50674 1.57063 1.68688 2.12361 2.47698 2.71292 2.80296 3.34307 3.39426 3.76440 3.80355 3.87640 3.93409 3.95465 4.01686 4.09007 4.15575 4.20228 4.24698 4.43750 4.46622 4.55268 4.64455 4.69902 4.76269 4.79830 4.81346 4.83082 4.91240 4.95570 4.97925 5.02952 5.08780 5.10258 5.15080 5.16601 5.26792 5.34529 5.45441 5.55748 5.61312 5.67557 5.76886 6.18841 6.27629 6.43913 6.47208 7.00921 7.10762 7.77334 8.41215 9.25707 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.034445 B = 0.001827 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.693967 B =15324.453750 C =15866.569066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.008 4.008 3 H 0.182 0.818 4 C 0.241 3.759 5 N -0.475 5.475 6 C 0.524 3.476 7 O -0.584 6.584 8 N -0.597 5.597 9 C 0.097 3.903 10 C -0.126 4.126 11 C -0.081 4.081 12 C 0.060 3.940 13 O -0.377 6.377 14 C 0.095 3.905 15 H 0.073 0.927 16 C -0.124 4.124 17 C 0.184 3.816 18 N -0.627 5.627 19 C -0.246 4.246 20 H 0.081 0.919 21 C -0.065 4.065 22 N -0.950 5.950 23 Si 0.980 3.020 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.278 1.278 27 C 0.115 3.885 28 C -0.120 4.120 29 C 0.113 3.887 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.016 0.984 43 H 0.009 0.991 44 H 0.248 0.752 45 H 0.023 0.977 46 H 0.040 0.960 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -9.197 19.455 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 H 0.199 0.801 4 C -0.077 4.077 5 N -0.151 5.151 6 C 0.310 3.690 7 O -0.464 6.464 8 N -0.329 5.329 9 C -0.024 4.024 10 C -0.164 4.164 11 C -0.099 4.099 12 C -0.017 4.017 13 O -0.295 6.295 14 C 0.037 3.963 15 H 0.091 0.909 16 C -0.162 4.162 17 C 0.059 3.941 18 N -0.355 5.355 19 C -0.375 4.375 20 H 0.099 0.901 21 C -0.258 4.258 22 N -0.599 5.599 23 Si 0.808 3.192 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.204 1.204 27 C -0.011 4.011 28 C -0.158 4.158 29 C -0.009 4.009 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.035 0.965 43 H 0.027 0.973 44 H 0.057 0.943 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.213 -10.366 20.840 24.368 hybrid contribution -0.374 0.159 -1.903 1.946 sum 6.839 -10.208 18.937 22.573 Atomic orbital electron populations 1.21866 0.87228 1.04213 1.06580 1.19238 1.00448 1.01096 0.82424 0.80109 1.28877 0.92303 0.92548 0.93966 1.81221 1.09930 1.09808 1.14160 1.20397 0.77261 0.86341 0.84963 1.90761 1.51277 1.18785 1.85543 1.48154 1.66788 1.10698 1.07268 1.22142 1.00245 0.78157 1.01855 1.21852 0.98833 1.02571 0.93095 1.21088 0.98731 0.95595 0.94505 1.22739 0.99485 0.81338 0.98130 1.87834 1.61548 1.23988 1.56149 1.22979 0.90358 0.96315 0.86696 0.90856 1.22805 1.01049 0.95465 0.96875 1.20928 0.93765 0.93668 0.85736 1.44660 1.44820 1.44067 1.01909 1.19420 1.18323 1.17899 0.81882 0.90075 1.25669 0.98831 0.98775 1.02546 1.70164 1.27702 1.27415 1.34591 0.85139 0.77229 0.77314 0.79556 1.20198 1.21924 1.20401 1.22053 0.93426 0.92896 0.92694 1.21829 0.99701 0.95099 0.99169 1.21614 0.98165 0.97996 0.83122 0.88388 0.87253 0.92589 0.86005 0.89420 0.89406 0.90659 0.90246 0.93832 0.92636 0.89296 0.90686 0.96526 0.97304 0.94280 0.95922 0.94132 0.89819 0.91227 0.90063 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 9.02 71.98 0.65 0.18 16 2 C -0.01 -0.06 2.25 -13.34 -0.03 -0.09 16 3 H 0.18 -0.33 6.36 -2.39 -0.02 -0.34 16 4 C 0.24 4.05 14.00 89.44 1.25 5.31 16 5 N -0.48 -11.47 18.54 20.01 0.37 -11.10 16 6 C 0.52 7.32 6.80 87.66 0.60 7.91 16 7 O -0.58 -14.38 15.66 -3.01 -0.05 -14.42 16 8 N -0.60 -5.86 2.98 -819.75 -2.44 -8.30 16 9 C 0.10 0.40 6.13 86.22 0.53 0.92 16 10 C -0.13 -1.00 5.25 30.53 0.16 -0.84 16 11 C -0.08 -0.98 2.39 -10.77 -0.03 -1.01 16 12 C 0.06 1.08 5.15 71.98 0.37 1.46 16 13 O -0.38 -9.56 9.66 -148.98 -1.44 -11.00 16 14 C 0.10 3.04 3.54 31.98 0.11 3.16 16 15 H 0.07 2.25 7.83 -2.39 -0.02 2.23 16 16 C -0.12 -4.29 6.69 31.78 0.21 -4.08 16 17 C 0.18 8.89 5.37 86.73 0.47 9.36 16 18 N -0.63 -32.02 3.39 -691.99 -2.35 -34.37 16 19 C -0.25 -13.75 10.28 84.03 0.86 -12.89 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 21 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 22 N -0.95 -56.41 10.31 21.65 0.22 -56.19 16 23 Si 0.98 45.10 29.55 68.60 2.03 47.13 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.11 4.62 6.97 86.85 0.61 5.23 16 28 C -0.12 -1.28 5.36 30.67 0.16 -1.11 16 29 C 0.11 1.32 6.42 86.36 0.55 1.87 16 30 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.11 -0.09 7.66 -2.39 -0.02 -0.11 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.12 -0.30 5.07 -2.39 -0.01 -0.31 16 34 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.09 0.86 7.79 -2.39 -0.02 0.84 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 43 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 45 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 1.21 7.04 -2.38 -0.02 1.20 16 Total: -1.00 -79.67 399.27 4.21 -75.46 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: 0.92 Total: 0.62 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.95 Total: 12.18 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -4.20 Total: -109.96 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.49 Total: -25.42 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -79.67 4.21 -75.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088230147.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.759 kcal (2) G-P(sol) polarization free energy of solvation -79.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds