Wall clock time and date at job start Tue Mar 31 2020 19:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47577 * 2 1 4 4 C 1.36450 * 124.85187 * 270.02402 * 3 2 1 5 5 C 1.50701 * 125.56737 * 0.02562 * 4 3 2 6 6 C 1.34486 * 108.85648 * 179.72730 * 4 3 2 7 7 C 1.46679 * 106.33290 * 0.37215 * 6 4 3 8 8 C 1.47270 * 126.93802 * 179.88924 * 7 6 4 9 9 O 1.21632 * 119.99477 * 179.68719 * 8 7 6 10 10 N 1.34769 * 120.00382 * 359.68568 * 8 7 6 11 11 C 1.46500 * 120.00484 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.44491 * 324.97088 * 11 10 8 13 13 C 1.53038 * 109.45985 * 84.92971 * 11 10 8 14 14 C 1.53184 * 109.31420 * 181.38794 * 13 11 10 15 15 N 1.46931 * 108.77900 * 305.36680 * 14 13 11 16 16 C 1.36930 * 120.63477 * 233.88628 * 15 14 13 17 17 H 1.07998 * 120.00455 * 151.58501 * 16 15 14 18 18 C 1.38815 * 119.99816 * 331.57924 * 16 15 14 19 19 N 1.31621 * 119.99984 * 343.18964 * 18 16 15 20 20 Si 1.86800 * 120.00122 * 163.18643 * 18 16 15 21 21 H 1.48503 * 109.47174 * 60.00002 * 20 18 16 22 22 H 1.48497 * 109.47073 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47370 * 300.00248 * 20 18 16 24 24 C 1.46927 * 118.73501 * 53.60671 * 15 14 13 25 25 C 1.53034 * 109.46228 * 205.00287 * 11 10 8 26 26 H 1.08996 * 109.52407 * 298.57795 * 25 11 10 27 27 O 1.42900 * 109.49915 * 58.66530 * 25 11 10 28 28 C 1.34662 * 124.85304 * 89.99514 * 3 2 1 29 29 C 1.50700 * 125.80352 * 0.04322 * 28 3 2 30 30 H 1.08998 * 109.46659 * 60.00174 * 1 2 3 31 31 H 1.09000 * 109.47233 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47122 * 300.00831 * 1 2 3 33 33 H 1.08999 * 109.47122 * 239.99169 * 2 1 3 34 34 H 1.09008 * 109.46898 * 119.99384 * 2 1 3 35 35 H 1.09001 * 109.47088 * 90.00573 * 5 4 3 36 36 H 1.09007 * 109.47185 * 210.00398 * 5 4 3 37 37 H 1.09000 * 109.47483 * 330.00515 * 5 4 3 38 38 H 1.08003 * 126.83064 * 180.25558 * 6 4 3 39 39 H 0.97004 * 119.99987 * 0.02562 * 10 8 7 40 40 H 1.09000 * 109.50124 * 301.34606 * 13 11 10 41 41 H 1.09004 * 109.49546 * 61.40841 * 13 11 10 42 42 H 1.09002 * 109.59146 * 185.58364 * 14 13 11 43 43 H 1.09003 * 109.58804 * 65.15780 * 14 13 11 44 44 H 0.97002 * 120.00123 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.58465 * 66.17608 * 24 15 14 46 46 H 1.08997 * 109.58427 * 186.46138 * 24 15 14 47 47 H 0.96699 * 113.99825 * 179.83926 * 27 25 11 48 48 H 1.09000 * 109.46868 * 269.99975 * 29 28 3 49 49 H 1.08997 * 109.46810 * 30.00104 * 29 28 3 50 50 H 1.08995 * 109.46953 * 149.99947 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2779 2.1164 -1.1198 5 6 2.1085 1.6406 -2.5396 6 6 2.7034 3.3372 -0.7492 7 6 2.7117 3.3434 0.7176 8 6 3.1049 4.4584 1.5956 9 8 3.0579 4.3267 2.8039 10 7 3.5170 5.6247 1.0605 11 6 3.9077 6.7340 1.9339 12 1 3.2805 6.7322 2.8255 13 6 5.3736 6.5701 2.3415 14 6 5.7687 7.7127 3.2823 15 7 5.4640 8.9919 2.6269 16 6 6.4295 9.9532 2.4902 17 1 6.3856 10.6493 1.6656 18 6 7.4647 10.0332 3.4116 19 7 7.3573 9.4293 4.5761 20 14 9.0102 10.9977 2.9987 21 1 8.6537 12.4152 2.7358 22 1 9.9562 10.9295 4.1413 23 1 9.6491 10.4159 1.7910 24 6 4.1053 9.2175 2.1153 25 6 3.7289 8.0580 1.1875 26 1 4.3739 8.0709 0.3090 27 8 2.3660 8.1959 0.7807 28 6 2.2749 2.1067 1.1051 29 6 2.1092 1.6358 2.5270 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.0989 1.8690 -2.8813 36 1 2.8317 2.1449 -3.1806 37 1 2.2722 0.5639 -2.5841 38 1 2.9849 4.1504 -1.4018 39 1 3.5542 5.7298 0.0969 40 1 5.5048 5.6163 2.8524 41 1 6.0036 6.5962 1.4523 42 1 6.8360 7.6572 3.4967 43 1 5.2029 7.6339 4.2107 44 1 8.0805 9.4855 5.2202 45 1 3.4038 9.2613 2.9484 46 1 4.0744 10.1560 1.5618 47 1 2.1792 9.0156 0.3029 48 1 1.1002 1.8643 2.8701 49 1 2.2743 0.5594 2.5748 50 1 2.8334 2.1431 3.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090408714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:14 Heat of formation + Delta-G solvation = -51.177271 kcal Electronic energy + Delta-G solvation = -29732.058976 eV Core-core repulsion = 25759.219124 eV Total energy + Delta-G solvation = -3972.839853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45957 -40.74934 -39.18270 -36.97279 -35.69542 -35.00115 -33.73960 -33.56377 -31.83153 -30.48523 -30.11823 -29.74044 -27.18014 -25.77443 -24.65057 -23.98996 -23.53015 -22.49817 -21.31135 -20.80836 -19.63015 -18.82930 -18.01523 -17.93722 -17.24365 -16.78594 -16.67675 -16.34465 -15.76396 -15.66856 -15.55280 -15.33009 -14.91063 -14.70909 -14.41946 -14.34129 -14.08759 -14.01141 -13.84470 -13.71397 -13.55243 -13.45621 -13.26405 -13.15871 -12.97240 -12.86104 -12.67756 -12.52180 -12.37597 -12.23215 -12.12956 -12.08346 -12.04916 -11.87725 -11.35992 -11.08756 -10.76370 -10.54906 -10.00544 -9.49526 -8.90917 -8.75679 -7.89461 -5.37769 0.77639 1.46127 1.48603 1.51585 1.58412 1.83102 2.43519 2.49895 2.61893 3.14348 3.27847 3.64001 3.77720 3.79087 3.87200 3.91021 4.08098 4.10639 4.13537 4.23070 4.28617 4.40006 4.40269 4.50628 4.54773 4.62993 4.66976 4.72153 4.77673 4.83320 4.85676 4.86442 4.95027 4.97667 5.04310 5.07271 5.12301 5.14844 5.24806 5.34791 5.37925 5.58957 5.61351 5.65388 5.85827 6.16518 6.34398 6.40363 6.75508 6.90001 7.09804 7.43485 7.77933 8.31816 9.18029 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.002473 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.437700 B =11321.815143 C =11579.279262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.016 3.984 5 C -0.079 4.079 6 C -0.185 4.185 7 C -0.264 4.264 8 C 0.582 3.418 9 O -0.596 6.596 10 N -0.702 5.702 11 C 0.173 3.827 12 H 0.052 0.948 13 C -0.127 4.127 14 C 0.182 3.818 15 N -0.603 5.603 16 C -0.267 4.267 17 H 0.077 0.923 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.973 3.027 21 H -0.272 1.272 22 H -0.297 1.297 23 H -0.275 1.275 24 C 0.119 3.881 25 C 0.103 3.897 26 H 0.072 0.928 27 O -0.571 6.571 28 C 0.095 3.905 29 C -0.087 4.087 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.154 0.846 39 H 0.408 0.592 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.063 0.937 43 H -0.009 1.009 44 H 0.251 0.749 45 H 0.011 0.989 46 H 0.077 0.923 47 H 0.395 0.605 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 -20.427 -17.232 29.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.035 4.035 3 N -0.109 5.109 4 C -0.092 4.092 5 C -0.136 4.136 6 C -0.208 4.208 7 C -0.274 4.274 8 C 0.373 3.627 9 O -0.479 6.479 10 N -0.351 5.351 11 C 0.068 3.932 12 H 0.070 0.930 13 C -0.168 4.168 14 C 0.055 3.945 15 N -0.328 5.328 16 C -0.396 4.396 17 H 0.095 0.905 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.801 3.199 21 H -0.197 1.197 22 H -0.224 1.224 23 H -0.201 1.201 24 C -0.008 4.008 25 C 0.042 3.958 26 H 0.090 0.910 27 O -0.378 6.378 28 C -0.023 4.023 29 C -0.145 4.145 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.172 0.828 39 H 0.244 0.756 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.009 0.991 44 H 0.060 0.940 45 H 0.029 0.971 46 H 0.096 0.904 47 H 0.245 0.755 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.667 -21.408 -16.029 30.033 hybrid contribution 1.011 1.505 0.117 1.817 sum -12.656 -19.903 -15.912 28.451 Atomic orbital electron populations 1.22124 0.93451 1.04241 1.02408 1.22232 0.96269 0.78816 1.06186 1.43887 1.49854 1.12931 1.04186 1.20731 1.06379 0.91929 0.90152 1.20431 1.03765 1.02286 0.87117 1.21969 1.08619 0.98251 0.91955 1.20137 1.18020 0.94937 0.94341 1.17866 0.75484 0.82415 0.86978 1.90694 1.57547 1.83087 1.16548 1.45606 1.66951 1.12176 1.10337 1.20586 0.94809 0.84881 0.92955 0.92964 1.22315 0.95190 0.98819 1.00453 1.20530 0.99591 0.83219 0.91122 1.44226 1.06490 1.13852 1.68215 1.19535 1.03122 1.10853 1.06137 0.90522 1.25931 1.03453 1.00940 0.94407 1.70207 1.32882 1.48739 1.06434 0.85260 0.79073 0.78781 0.76825 1.19750 1.22353 1.20068 1.21689 0.86334 0.97101 0.95681 1.22304 0.83114 0.93789 0.96594 0.91014 1.86478 1.26515 1.46346 1.78441 1.20396 1.00625 0.91056 0.90253 1.20479 1.03373 1.01905 0.88713 0.92130 0.88262 0.93331 0.86669 0.88067 0.90001 0.89219 0.90044 0.82811 0.75602 0.92770 0.91458 0.91856 0.99083 0.94004 0.97078 0.90439 0.75489 0.90531 0.89156 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.24 71.98 0.74 -0.59 16 2 C 0.08 0.80 6.30 86.38 0.54 1.34 16 3 N -0.43 -7.92 2.69 -495.49 -1.33 -9.25 16 4 C 0.02 0.30 6.85 40.98 0.28 0.58 16 5 C -0.08 -0.74 10.06 71.24 0.72 -0.02 16 6 C -0.18 -4.34 10.45 23.62 0.25 -4.09 16 7 C -0.26 -8.03 6.29 -19.04 -0.12 -8.15 16 8 C 0.58 21.75 7.77 86.62 0.67 22.42 16 9 O -0.60 -26.54 14.48 -4.13 -0.06 -26.60 16 10 N -0.70 -24.18 4.91 -445.83 -2.19 -26.37 16 11 C 0.17 6.88 2.12 45.02 0.10 6.98 16 12 H 0.05 2.45 7.58 -2.38 -0.02 2.43 16 13 C -0.13 -5.52 5.65 30.67 0.17 -5.35 16 14 C 0.18 9.48 5.31 86.36 0.46 9.94 16 15 N -0.60 -30.98 2.99 -699.09 -2.09 -33.07 16 16 C -0.27 -14.58 9.58 84.04 0.81 -13.77 16 17 H 0.08 3.95 7.88 -2.91 -0.02 3.92 16 18 C -0.05 -2.91 4.92 84.86 0.42 -2.50 16 19 N -0.94 -56.84 11.20 21.65 0.24 -56.60 16 20 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 C 0.12 4.99 6.14 86.36 0.53 5.52 16 25 C 0.10 3.63 3.14 30.67 0.10 3.72 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 O -0.57 -17.25 13.16 -148.98 -1.96 -19.21 16 28 C 0.09 2.43 6.89 41.78 0.29 2.72 16 29 C -0.09 -2.04 9.52 71.24 0.68 -1.36 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.12 0.55 6.90 -2.39 -0.02 0.53 16 34 H 0.10 0.77 6.88 -2.38 -0.02 0.75 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.08 0.46 6.94 -2.39 -0.02 0.45 16 38 H 0.15 3.04 7.70 -2.91 -0.02 3.02 16 39 H 0.41 11.72 7.72 -92.71 -0.72 11.01 16 40 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.06 3.65 6.06 -2.39 -0.01 3.63 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 2.95 7.93 -2.39 -0.02 2.93 16 47 H 0.40 8.01 9.08 -74.06 -0.67 7.34 16 48 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.09 1.44 6.92 -2.39 -0.02 1.43 16 50 H 0.07 2.16 6.47 -2.39 -0.02 2.14 16 Total: -1.00 -78.25 397.50 0.83 -77.42 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.43 Total: 29.48 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.62 Total: 17.40 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -5.37 Total: -125.29 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -2.02 Total: -45.81 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -78.25 0.83 -77.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090408714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.241 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds