Wall clock time and date at job start Tue Mar 31 2020 19:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46900 * 2 1 4 4 C 1.46820 * 124.33478 * 269.93398 * 3 2 1 5 5 C 1.54474 * 105.44765 * 197.00211 * 4 3 2 6 6 H 1.09001 * 110.96774 * 92.76452 * 5 4 3 7 7 C 1.50702 * 110.97310 * 216.49596 * 5 4 3 8 8 O 1.21284 * 119.99478 * 356.91029 * 7 5 4 9 9 N 1.34768 * 120.00100 * 176.91112 * 7 5 4 10 10 C 1.47198 * 126.70419 * 359.96987 * 9 7 5 11 11 C 1.53743 * 106.42992 * 211.40854 * 10 9 7 12 12 H 1.08994 * 112.28760 * 104.36305 * 11 10 9 13 13 C 1.54454 * 109.01249 * 229.45791 * 11 10 9 14 14 N 1.48333 * 104.32534 * 137.35930 * 13 11 10 15 15 C 1.36929 * 128.19874 * 138.17381 * 14 13 11 16 16 H 1.08003 * 119.99854 * 200.26944 * 15 14 13 17 17 C 1.38812 * 120.00403 * 20.27079 * 15 14 13 18 18 N 1.31621 * 119.99809 * 20.59796 * 17 15 14 19 19 Si 1.86797 * 120.00128 * 200.60163 * 17 15 14 20 20 H 1.48507 * 109.46876 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47288 * 59.99687 * 19 17 15 22 22 H 1.48495 * 109.47032 * 299.99395 * 19 17 15 23 23 C 1.48341 * 103.60177 * 318.43173 * 14 13 11 24 24 C 1.54063 * 104.51367 * 41.53558 * 23 14 13 25 25 C 1.52994 * 112.58270 * 97.43617 * 24 23 14 26 26 C 1.47198 * 126.70339 * 180.02562 * 9 7 5 27 27 C 1.54634 * 101.79745 * 334.63235 * 5 4 3 28 28 C 1.34418 * 124.34993 * 89.97610 * 3 2 1 29 29 O 1.21287 * 124.94054 * 359.62510 * 28 3 2 30 30 H 1.08994 * 109.47543 * 59.99964 * 1 2 3 31 31 H 1.09003 * 109.46718 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46982 * 299.99773 * 1 2 3 33 33 H 1.08996 * 109.46804 * 240.00218 * 2 1 3 34 34 H 1.08998 * 109.46834 * 120.00081 * 2 1 3 35 35 H 1.09003 * 110.23516 * 78.02037 * 4 3 2 36 36 H 1.08998 * 110.28240 * 316.00890 * 4 3 2 37 37 H 1.09004 * 110.06583 * 92.16748 * 10 9 7 38 38 H 1.09001 * 110.06718 * 330.65027 * 10 9 7 39 39 H 1.09005 * 110.46270 * 18.64939 * 13 11 10 40 40 H 1.08996 * 110.57109 * 256.12265 * 13 11 10 41 41 H 0.97000 * 119.99816 * 5.84181 * 18 17 15 42 42 H 1.08995 * 110.46080 * 160.27831 * 23 14 13 43 43 H 1.08997 * 110.46228 * 282.85881 * 23 14 13 44 44 H 1.09004 * 109.46937 * 302.11454 * 25 24 23 45 45 H 1.09008 * 109.47199 * 62.10869 * 25 24 23 46 46 H 1.08996 * 109.47449 * 182.10749 * 25 24 23 47 47 H 1.08996 * 110.06274 * 267.83567 * 26 9 7 48 48 H 1.08993 * 110.06226 * 29.29409 * 26 9 7 49 49 H 1.08998 * 110.48681 * 143.45514 * 27 5 4 50 50 H 1.09004 * 110.48686 * 266.10129 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2956 2.1615 -1.2124 5 6 3.1748 3.3439 -0.7485 6 1 4.2337 3.1037 -0.8441 7 6 2.8382 4.5986 -1.5125 8 8 2.0123 4.5649 -2.4000 9 7 3.4549 5.7580 -1.2094 10 6 4.4732 5.9666 -0.1671 11 6 4.2899 7.4071 0.3377 12 1 3.8015 7.4449 1.3114 13 6 5.6616 8.1171 0.3423 14 7 5.3782 9.4668 -0.2038 15 6 5.8632 10.6731 0.2258 16 1 5.3451 11.5855 -0.0301 17 6 7.0208 10.7233 0.9903 18 7 7.8663 9.7148 0.9712 19 14 7.3784 12.2221 2.0463 20 1 8.6663 12.0288 2.7599 21 1 6.2864 12.4020 3.0364 22 1 7.4667 13.4266 1.1823 23 6 4.4398 9.2009 -1.3215 24 6 3.4795 8.1285 -0.7726 25 6 2.1720 8.7244 -0.2471 26 6 3.2409 7.0633 -1.8552 27 6 2.7693 3.4755 0.7379 28 6 2.2707 2.0965 1.1098 29 8 2.1211 1.6945 2.2442 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.3653 2.5300 -1.6446 36 1 2.8345 1.5529 -1.9384 37 1 5.4707 5.8421 -0.5886 38 1 4.3215 5.2617 0.6503 39 1 6.3670 7.5873 -0.2981 40 1 6.0513 8.1909 1.3575 41 1 7.7247 8.9747 0.3603 42 1 3.8905 10.1057 -1.5813 43 1 4.9786 8.8189 -2.1887 44 1 2.3924 9.4514 0.5346 45 1 1.6434 9.2173 -1.0631 46 1 1.5487 7.9291 0.1616 47 1 3.9489 7.1963 -2.6731 48 1 2.2197 7.1321 -2.2300 49 1 3.6322 3.7461 1.3463 50 1 1.9742 4.2123 0.8526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091717039.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:34 Heat of formation + Delta-G solvation = -55.352316 kcal Electronic energy + Delta-G solvation = -30307.719949 eV Core-core repulsion = 26334.699053 eV Total energy + Delta-G solvation = -3973.020896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16371 -41.23526 -39.75625 -37.46729 -36.80906 -35.12935 -34.42458 -32.54929 -31.53285 -30.79048 -28.84830 -28.02956 -27.34650 -26.79596 -24.91260 -24.18513 -23.16499 -22.22080 -20.67918 -20.32703 -19.86122 -19.32259 -18.41821 -17.77456 -17.48371 -16.69923 -16.63508 -16.28339 -16.06231 -15.82457 -15.50841 -15.48723 -15.07251 -14.99690 -14.68060 -14.46118 -14.40636 -14.18143 -13.98614 -13.65654 -13.41081 -13.26332 -13.07174 -12.94844 -12.86935 -12.61884 -12.52564 -12.48552 -12.35850 -12.24157 -12.01749 -11.90771 -11.68844 -11.62626 -11.54882 -11.39025 -11.17471 -10.78518 -10.59158 -9.82879 -9.77229 -9.01247 -8.29257 -5.34127 1.40094 1.46798 1.59583 1.66814 1.72900 1.85177 2.03171 2.64954 3.03052 3.23539 3.24820 3.35060 3.38754 3.61896 3.79296 3.81962 3.87616 4.04985 4.09720 4.10943 4.16847 4.22582 4.25629 4.41467 4.44954 4.49086 4.50948 4.63169 4.65505 4.71074 4.76696 4.79641 4.82977 4.85756 4.90150 4.92490 4.96878 4.99591 5.10330 5.19843 5.24057 5.25342 5.32883 5.40875 5.51919 5.67671 5.99373 6.33053 6.45594 6.88053 6.97780 7.03990 7.68930 8.37004 9.07120 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.002680 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.905717 B =10445.862592 C =11106.493195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.615 5.615 4 C 0.121 3.879 5 C -0.110 4.110 6 H 0.145 0.855 7 C 0.546 3.454 8 O -0.569 6.569 9 N -0.606 5.606 10 C 0.108 3.892 11 C -0.102 4.102 12 H 0.092 0.908 13 C 0.148 3.852 14 N -0.625 5.625 15 C -0.328 4.328 16 H 0.059 0.941 17 C -0.080 4.080 18 N -0.954 5.954 19 Si 1.117 2.883 20 H -0.293 1.293 21 H -0.280 1.280 22 H -0.277 1.277 23 C 0.135 3.865 24 C -0.075 4.075 25 C -0.114 4.114 26 C 0.123 3.877 27 C -0.142 4.142 28 C 0.514 3.486 29 O -0.574 6.574 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.034 0.966 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.021 0.979 40 H 0.035 0.965 41 H 0.257 0.743 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.127 0.873 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 -17.538 -5.395 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.348 5.348 4 C -0.002 4.002 5 C -0.132 4.132 6 H 0.163 0.837 7 C 0.336 3.664 8 O -0.449 6.449 9 N -0.338 5.338 10 C -0.015 4.015 11 C -0.122 4.122 12 H 0.110 0.890 13 C 0.022 3.978 14 N -0.350 5.350 15 C -0.457 4.457 16 H 0.077 0.923 17 C -0.276 4.276 18 N -0.598 5.598 19 Si 0.942 3.058 20 H -0.219 1.219 21 H -0.207 1.207 22 H -0.203 1.203 23 C 0.009 3.991 24 C -0.077 4.077 25 C -0.172 4.172 26 C 0.000 4.000 27 C -0.182 4.182 28 C 0.303 3.697 29 O -0.454 6.454 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.145 0.855 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.637 -17.153 -4.187 21.146 hybrid contribution -0.718 -0.176 -1.158 1.374 sum -12.355 -17.329 -5.346 21.943 Atomic orbital electron populations 1.22131 0.95493 1.03339 1.01491 1.21572 0.94684 0.80026 1.04245 1.48526 1.64776 1.14530 1.06935 1.22048 1.00260 0.91133 0.86716 1.22198 1.04416 0.92407 0.94161 0.83692 1.20050 0.79642 0.83626 0.83115 1.90706 1.34988 1.85553 1.33663 1.48532 1.40685 1.08239 1.36328 1.22387 0.91691 0.96377 0.91027 1.22972 0.96552 0.93842 0.98882 0.89014 1.21770 0.93715 0.85526 0.96801 1.45375 1.53922 1.02220 1.33441 1.19999 1.07083 0.84864 1.33726 0.92289 1.27114 0.91443 1.06007 1.03000 1.70887 1.36299 1.11996 1.40586 0.82803 0.75697 0.72020 0.75274 1.21861 1.20662 1.20280 1.21925 0.90797 0.96356 0.89975 1.22144 0.96022 0.94827 0.94707 1.21533 0.94424 1.00300 1.00906 1.22047 1.02282 0.81056 0.94614 1.22410 1.04777 0.95470 0.95537 1.21079 0.76422 0.88003 0.84202 1.90715 1.55851 1.76084 1.22796 0.92005 0.89425 0.94655 0.87167 0.90843 0.90132 0.86962 0.90400 0.87640 0.96089 0.94667 0.93210 0.93313 0.95578 0.93651 0.91563 0.91799 0.91310 0.90009 0.85523 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 71.98 0.74 -1.42 16 2 C 0.12 1.51 6.65 86.38 0.57 2.08 16 3 N -0.61 -10.23 2.93 -817.85 -2.40 -12.63 16 4 C 0.12 1.68 6.69 86.82 0.58 2.26 16 5 C -0.11 -1.64 2.96 -10.48 -0.03 -1.67 16 6 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 7 C 0.55 11.83 7.14 87.66 0.63 12.46 16 8 O -0.57 -15.87 15.76 -3.04 -0.05 -15.92 16 9 N -0.61 -13.84 3.32 -815.40 -2.71 -16.55 16 10 C 0.11 2.43 6.30 86.50 0.55 2.98 16 11 C -0.10 -3.09 3.73 -9.28 -0.03 -3.13 16 12 H 0.09 2.75 7.95 -2.39 -0.02 2.73 16 13 C 0.15 6.20 4.62 86.52 0.40 6.60 16 14 N -0.62 -29.88 3.25 -687.67 -2.24 -32.11 16 15 C -0.33 -17.92 10.26 84.03 0.86 -17.06 16 16 H 0.06 3.21 7.91 -2.91 -0.02 3.19 16 17 C -0.08 -4.48 5.20 84.86 0.44 -4.04 16 18 N -0.95 -56.77 12.70 21.65 0.28 -56.50 16 19 Si 1.12 50.06 29.97 68.60 2.06 52.12 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 23 C 0.14 5.13 6.38 86.38 0.55 5.68 16 24 C -0.07 -2.21 1.07 -50.80 -0.05 -2.27 16 25 C -0.11 -3.10 8.60 71.98 0.62 -2.48 16 26 C 0.12 3.18 6.21 86.50 0.54 3.72 16 27 C -0.14 -2.38 5.28 30.59 0.16 -2.22 16 28 C 0.51 11.32 8.02 87.90 0.71 12.03 16 29 O -0.57 -17.59 17.60 -3.05 -0.05 -17.64 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.13 7.93 -2.39 -0.02 1.11 16 35 H 0.08 1.37 7.01 -2.39 -0.02 1.36 16 36 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.80 7.10 -2.38 -0.02 1.78 16 38 H 0.11 1.81 5.08 -2.39 -0.01 1.79 16 39 H 0.02 0.91 6.79 -2.38 -0.02 0.89 16 40 H 0.03 1.70 7.16 -2.39 -0.02 1.68 16 41 H 0.26 15.28 6.10 -92.71 -0.57 14.72 16 42 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 43 H 0.03 1.00 7.16 -2.39 -0.02 0.98 16 44 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.83 7.10 -2.39 -0.02 1.81 16 48 H 0.08 2.08 7.61 -2.39 -0.02 2.07 16 49 H 0.13 1.82 6.66 -2.39 -0.02 1.80 16 50 H 0.11 1.90 7.89 -2.38 -0.02 1.89 16 Total: -1.00 -74.15 386.86 3.24 -70.91 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.13 Total: 14.80 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 7.22 Total: 13.53 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -7.07 Total: -117.79 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.10 Total: -33.56 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.06 Total: 52.12 kcal Total: -74.15 3.24 -70.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091717039.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.555 kcal (2) G-P(sol) polarization free energy of solvation -74.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds