Wall clock time and date at job start Tue Mar 31 2020 19:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09009 * 109.46846 * 2 1 4 4 C 1.50699 * 109.47400 * 239.99998 * 2 1 3 5 5 O 1.21285 * 119.99779 * 240.27299 * 4 2 1 6 6 N 1.34775 * 119.99860 * 60.00082 * 4 2 1 7 7 C 1.46498 * 119.99902 * 180.02562 * 6 4 2 8 8 H 1.09008 * 110.55759 * 42.70481 * 7 6 4 9 9 C 1.54852 * 110.63004 * 165.60306 * 7 6 4 10 10 C 1.56223 * 103.26889 * 118.45015 * 9 7 6 11 11 H 1.08997 * 116.06508 * 159.21764 * 10 9 7 12 12 C 1.55841 * 105.15140 * 288.27901 * 10 9 7 13 13 C 1.54854 * 103.44870 * 71.82696 * 12 10 9 14 14 C 1.55843 * 110.62823 * 279.80934 * 7 6 4 15 15 H 1.08996 * 115.56242 * 81.93913 * 14 7 6 16 16 N 1.50242 * 101.05072 * 208.57259 * 14 7 6 17 17 C 1.36931 * 130.83837 * 233.94324 * 16 14 7 18 18 H 1.08000 * 119.99812 * 344.58291 * 17 16 14 19 19 C 1.38810 * 120.00211 * 164.58033 * 17 16 14 20 20 N 1.31623 * 120.00093 * 155.25697 * 19 17 16 21 21 Si 1.86800 * 120.00034 * 335.26095 * 19 17 16 22 22 H 1.48496 * 109.46958 * 88.48582 * 21 19 17 23 23 H 1.48501 * 109.46973 * 208.48831 * 21 19 17 24 24 H 1.48497 * 109.46767 * 328.48484 * 21 19 17 25 25 N 1.46494 * 109.47326 * 119.99389 * 2 1 3 26 26 C 1.45756 * 117.95406 * 240.00568 * 25 2 1 27 27 C 1.52916 * 110.49313 * 160.92680 * 26 25 2 28 28 C 1.53345 * 108.67650 * 50.74915 * 27 26 25 29 29 C 1.53066 * 108.42630 * 292.47588 * 28 27 26 30 30 C 1.33356 * 117.94441 * 59.74086 * 25 2 1 31 31 O 1.21283 * 118.24434 * 2.23008 * 30 25 2 32 32 H 1.08997 * 109.47414 * 60.00757 * 1 2 3 33 33 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47345 * 300.00084 * 1 2 3 35 35 H 0.97000 * 120.00043 * 359.97438 * 6 4 2 36 36 H 1.08995 * 110.63340 * 236.98197 * 9 7 6 37 37 H 1.09004 * 110.62108 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.61984 * 313.34085 * 12 10 9 39 39 H 1.08997 * 110.62606 * 190.32076 * 12 10 9 40 40 H 1.08998 * 110.62395 * 241.51605 * 13 12 10 41 41 H 1.08998 * 110.76114 * 118.55504 * 13 12 10 42 42 H 0.96999 * 120.00121 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.29466 * 281.24002 * 26 25 2 44 44 H 1.09006 * 109.29863 * 40.60808 * 26 25 2 45 45 H 1.08995 * 109.60432 * 170.50951 * 27 26 25 46 46 H 1.09005 * 109.59983 * 290.83214 * 27 26 25 47 47 H 1.09000 * 109.67051 * 52.20376 * 28 27 26 48 48 H 1.08995 * 109.67730 * 172.73655 * 28 27 26 49 49 H 1.09006 * 109.40256 * 169.02843 * 29 28 27 50 50 H 1.09000 * 109.40080 * 288.85103 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7255 -1.6994 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9408 -3.6507 8 1 2.1103 -2.0209 -3.5301 9 6 1.4207 -0.4701 -4.9065 10 6 2.5365 0.1599 -5.8002 11 1 2.3090 0.2430 -6.8629 12 6 2.9245 1.4913 -5.0894 13 6 3.6955 1.0173 -3.8328 14 6 3.6684 -0.5361 -3.9557 15 1 4.4298 -1.0664 -3.3837 16 7 3.7113 -0.7078 -5.4476 17 6 4.5601 -1.4318 -6.2417 18 1 5.4947 -1.7962 -5.8415 19 6 4.2194 -1.6972 -7.5608 20 7 5.1612 -1.9378 -8.4482 21 14 2.4241 -1.7129 -8.0768 22 1 2.0108 -0.3426 -8.4725 23 1 2.2478 -2.6349 -9.2275 24 1 1.5866 -2.1738 -6.9404 25 7 2.0183 -0.6904 1.1962 26 6 2.8529 0.0605 2.1257 27 6 2.8768 -0.6210 3.4943 28 6 3.2231 -2.1021 3.2994 29 6 2.0609 -2.7786 2.5684 30 6 1.6669 -1.9652 1.3692 31 8 0.9975 -2.4978 0.5094 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.1488 0.5385 -2.5435 36 1 0.9547 -1.3168 -5.4103 37 1 0.6741 0.2778 -4.6394 38 1 2.0321 2.0487 -4.8047 39 1 3.5677 2.0951 -5.7295 40 1 3.1854 1.3396 -2.9251 41 1 4.7212 1.3857 -3.8470 42 1 4.9232 -2.1230 -9.3701 43 1 3.8683 0.1167 1.7333 44 1 2.4550 1.0697 2.2325 45 1 3.6304 -0.1491 4.1248 46 1 1.8977 -0.5308 3.9649 47 1 4.1322 -2.1911 2.7047 48 1 3.3713 -2.5752 4.2701 49 1 2.3651 -3.7754 2.2489 50 1 1.2074 -2.8589 3.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096600179.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:40 Heat of formation + Delta-G solvation = -8.076367 kcal Electronic energy + Delta-G solvation = -31126.007206 eV Core-core repulsion = 27155.036349 eV Total energy + Delta-G solvation = -3970.970857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.09945 -39.91014 -38.19231 -36.55507 -34.76395 -33.96838 -32.38431 -30.91603 -29.77010 -29.68539 -29.25108 -27.95645 -25.05479 -24.52935 -23.86219 -22.63063 -21.52635 -20.52921 -19.96933 -18.86205 -18.64488 -17.39118 -17.10774 -16.71366 -16.13245 -15.78952 -15.39237 -15.15977 -15.03111 -14.56564 -14.43404 -14.10035 -13.87839 -13.58070 -13.43623 -13.39337 -12.93231 -12.70580 -12.49860 -12.27133 -12.16904 -12.15415 -11.83563 -11.72544 -11.44109 -11.30159 -11.29315 -11.20965 -11.07721 -11.05116 -10.88643 -10.37935 -10.16422 -9.83657 -9.61255 -9.55502 -9.51935 -9.33808 -8.77061 -8.70458 -8.52468 -7.15278 -5.91673 -3.16266 2.58347 2.81586 2.95281 3.30452 3.47651 3.50858 3.53297 4.33826 4.39133 4.41382 4.54419 4.56540 4.70435 4.80032 4.88521 4.91157 5.07766 5.10210 5.17950 5.22574 5.27196 5.36580 5.41094 5.44848 5.49697 5.55378 5.58397 5.65071 5.66049 5.70484 5.82167 5.86493 5.89364 5.99480 6.02723 6.05319 6.27046 6.30015 6.36456 6.48960 6.56113 6.70135 6.74569 6.96108 7.00918 7.37959 7.46674 7.81748 8.21558 8.34081 8.58568 8.76982 9.67835 10.29793 11.24730 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.003140 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.636224 B = 8914.863444 C = 9055.820214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 H 0.107 0.893 4 C 0.507 3.493 5 O -0.517 6.517 6 N -0.715 5.715 7 C 0.133 3.867 8 H 0.083 0.917 9 C -0.145 4.145 10 C 0.117 3.883 11 H 0.100 0.900 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.137 3.863 15 H 0.094 0.906 16 N -0.600 5.600 17 C -0.225 4.225 18 H 0.094 0.906 19 C 0.019 3.981 20 N -0.908 5.908 21 Si 0.869 3.131 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.263 1.263 25 N -0.592 5.592 26 C 0.114 3.886 27 C -0.133 4.133 28 C -0.125 4.125 29 C -0.131 4.131 30 C 0.524 3.476 31 O -0.531 6.531 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.392 0.608 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.262 0.738 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.100 0.900 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 9.135 25.255 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 H 0.125 0.875 4 C 0.291 3.709 5 O -0.391 6.391 6 N -0.368 5.368 7 C 0.027 3.973 8 H 0.101 0.899 9 C -0.184 4.184 10 C 0.010 3.990 11 H 0.118 0.882 12 C -0.167 4.167 13 C -0.166 4.166 14 C 0.028 3.972 15 H 0.112 0.888 16 N -0.323 5.323 17 C -0.352 4.352 18 H 0.112 0.888 19 C -0.179 4.179 20 N -0.552 5.552 21 Si 0.701 3.299 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.188 1.188 25 N -0.326 5.326 26 C -0.009 4.009 27 C -0.171 4.171 28 C -0.162 4.162 29 C -0.171 4.171 30 C 0.313 3.687 31 O -0.407 6.407 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.826 7.894 24.614 27.314 hybrid contribution -1.206 0.405 -0.508 1.370 sum -10.032 8.299 24.106 27.397 Atomic orbital electron populations 1.22160 0.92735 1.05127 1.02282 1.20951 0.96118 0.96355 0.84877 0.87472 1.20524 0.80826 0.85075 0.84470 1.90703 1.37287 1.24928 1.86189 1.46122 1.53454 1.31635 1.05587 1.22529 0.95775 0.96846 0.82170 0.89927 1.23470 0.97674 1.00808 0.96488 1.23322 0.87902 0.90419 0.97313 0.88244 1.22885 0.98804 0.97584 0.97400 1.22866 0.99629 0.97618 0.96526 1.23188 0.94058 0.93875 0.86040 0.88812 1.46822 1.32993 1.52209 1.00258 1.18625 0.97125 1.27682 0.91725 0.88815 1.24884 0.97206 1.00290 0.95489 1.69868 1.31483 1.51563 1.02267 0.87129 0.88291 0.76619 0.77894 1.21593 1.23107 1.18792 1.47036 1.51714 1.11778 1.22050 1.21440 0.95159 0.95138 0.89181 1.21856 1.02978 0.96205 0.96050 1.21657 0.98470 0.95032 1.01062 1.21622 0.99888 1.00122 0.95439 1.19965 0.79692 0.81111 0.87979 1.90702 1.39006 1.68511 1.42499 0.91298 0.89511 0.91887 0.77429 0.90753 0.91826 0.92856 0.92050 0.92590 0.92449 0.92779 0.91551 0.90728 0.89741 0.90994 0.90804 0.90651 0.88208 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.97 37.15 0.33 -1.28 16 2 C 0.12 1.36 3.02 -69.09 -0.21 1.16 16 3 H 0.11 0.83 7.79 -51.92 -0.40 0.43 16 4 C 0.51 7.85 6.33 -10.99 -0.07 7.78 16 5 O -0.52 -10.47 14.25 -16.30 -0.23 -10.70 16 6 N -0.72 -10.32 3.46 -51.40 -0.18 -10.50 16 7 C 0.13 2.47 2.99 -65.44 -0.20 2.27 16 8 H 0.08 1.81 7.87 -51.92 -0.41 1.40 16 9 C -0.14 -2.63 6.02 -24.03 -0.14 -2.77 16 10 C 0.12 2.45 3.64 -62.59 -0.23 2.22 16 11 H 0.10 2.26 4.19 -51.93 -0.22 2.04 16 12 C -0.13 -2.19 6.44 -24.24 -0.16 -2.35 16 13 C -0.13 -2.16 6.33 -24.23 -0.15 -2.31 16 14 C 0.14 2.81 5.29 -62.80 -0.33 2.48 16 15 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 16 N -0.60 -14.63 2.75 -145.59 -0.40 -15.03 16 17 C -0.23 -6.51 10.89 -15.06 -0.16 -6.67 16 18 H 0.09 2.90 8.06 -52.49 -0.42 2.48 16 19 C 0.02 0.57 5.48 -17.43 -0.10 0.48 16 20 N -0.91 -28.47 13.97 55.49 0.78 -27.70 16 21 Si 0.87 22.32 24.85 -169.99 -4.23 18.10 16 22 H -0.29 -7.06 6.29 56.52 0.36 -6.70 16 23 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 24 H -0.26 -6.49 5.22 56.52 0.29 -6.20 16 25 N -0.59 -6.42 2.61 -168.70 -0.44 -6.86 16 26 C 0.11 0.80 6.25 -4.49 -0.03 0.77 16 27 C -0.13 -0.70 6.02 -26.60 -0.16 -0.86 16 28 C -0.12 -0.84 6.04 -26.52 -0.16 -1.00 16 29 C -0.13 -1.22 6.03 -28.11 -0.17 -1.39 16 30 C 0.52 6.92 6.19 -11.88 -0.07 6.85 16 31 O -0.53 -9.37 12.76 -16.30 -0.21 -9.57 16 32 H 0.07 0.56 7.56 -51.93 -0.39 0.16 16 33 H 0.09 1.14 5.98 -51.93 -0.31 0.83 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.39 4.35 7.55 -40.82 -0.31 4.04 16 36 H 0.07 1.48 6.23 -51.93 -0.32 1.15 16 37 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 38 H 0.05 0.74 7.83 -51.93 -0.41 0.33 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.79 6.60 -51.93 -0.34 0.45 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.36 8.03 -51.93 -0.42 -0.06 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 47 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -37.08 372.03 -9.58 -46.66 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.27 Total: 4.62 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.01 Total: 5.38 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.24 Total: -60.09 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.44 Total: -20.27 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.23 Total: 18.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.08 -9.58 -46.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096600179.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.583 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds