Wall clock time and date at job start Tue Mar 31 2020 19:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46980 * 2 1 4 4 C 1.50708 * 109.47331 * 119.99371 * 2 1 3 5 5 O 1.21279 * 120.00162 * 120.00213 * 4 2 1 6 6 N 1.34780 * 119.99713 * 300.00645 * 4 2 1 7 7 C 1.46501 * 119.99810 * 179.97438 * 6 4 2 8 8 H 1.08995 * 110.55661 * 32.09843 * 7 6 4 9 9 C 1.54849 * 110.62494 * 269.02106 * 7 6 4 10 10 C 1.55839 * 103.44654 * 241.51015 * 9 7 6 11 11 H 1.09005 * 116.13263 * 159.14790 * 10 9 7 12 12 C 1.55845 * 105.06837 * 288.17784 * 10 9 7 13 13 C 1.54848 * 103.44247 * 71.82090 * 12 10 9 14 14 C 1.55844 * 110.62387 * 154.99792 * 7 6 4 15 15 H 1.09004 * 115.56543 * 319.67607 * 14 7 6 16 16 N 1.50234 * 101.05162 * 85.55150 * 14 7 6 17 17 C 1.36940 * 130.84040 * 233.94594 * 16 14 7 18 18 H 1.07997 * 120.00320 * 171.60055 * 17 16 14 19 19 C 1.38819 * 119.99427 * 351.59445 * 17 16 14 20 20 N 1.31621 * 119.99212 * 157.94446 * 19 17 16 21 21 Si 1.86797 * 120.00519 * 337.94942 * 19 17 16 22 22 H 1.48494 * 109.47179 * 93.13046 * 21 19 17 23 23 H 1.48498 * 109.47226 * 213.13270 * 21 19 17 24 24 H 1.48500 * 109.46899 * 333.13198 * 21 19 17 25 25 N 1.46498 * 109.47299 * 239.99502 * 2 1 3 26 26 C 1.46118 * 117.87719 * 120.04424 * 25 2 1 27 27 C 1.52925 * 110.29040 * 160.98706 * 26 25 2 28 28 C 1.53338 * 108.80950 * 50.69145 * 27 26 25 29 29 C 1.53068 * 108.42699 * 292.39155 * 28 27 26 30 30 C 1.33351 * 117.94771 * 299.99545 * 25 2 1 31 31 O 1.21282 * 118.24538 * 2.20441 * 30 25 2 32 32 H 1.09000 * 109.46943 * 60.00756 * 1 2 3 33 33 H 1.09003 * 109.46659 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47531 * 300.00308 * 1 2 3 35 35 H 0.96997 * 119.99918 * 359.97438 * 6 4 2 36 36 H 1.09005 * 110.62878 * 0.02562 * 9 7 6 37 37 H 1.08997 * 110.62404 * 123.02072 * 9 7 6 38 38 H 1.08993 * 110.63202 * 190.31244 * 12 10 9 39 39 H 1.08998 * 110.61987 * 313.17686 * 12 10 9 40 40 H 1.09002 * 110.62571 * 241.51220 * 13 12 10 41 41 H 1.09003 * 110.62553 * 118.49570 * 13 12 10 42 42 H 0.96999 * 119.99790 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.51371 * 40.66143 * 26 25 2 44 44 H 1.09000 * 109.28580 * 281.16813 * 26 25 2 45 45 H 1.09007 * 109.59867 * 290.85540 * 27 26 25 46 46 H 1.08992 * 109.60127 * 170.53620 * 27 26 25 47 47 H 1.08997 * 109.67336 * 52.12435 * 28 27 26 48 48 H 1.09002 * 109.67514 * 172.65443 * 28 27 26 49 49 H 1.09002 * 109.40583 * 169.03390 * 29 28 27 50 50 H 1.09008 * 109.39984 * 288.85503 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6963 1.1194 6 7 1.7067 -0.2497 2.4547 7 6 2.1946 -0.9405 3.6509 8 1 3.1724 -1.3845 3.4644 9 6 1.1812 -2.0174 4.1103 10 6 0.7703 -1.5432 5.5368 11 1 -0.1744 -1.9311 5.9181 12 6 2.0183 -1.8156 6.4296 13 6 3.0316 -0.7387 5.9700 14 6 2.2579 0.0378 4.8623 15 1 2.6193 1.0415 4.6381 16 7 0.8497 -0.0513 5.3783 17 6 -0.0762 0.9263 5.6278 18 1 -1.0931 0.6572 5.8725 19 6 0.2925 2.2632 5.5664 20 7 -0.6219 3.1896 5.3710 21 14 2.0860 2.7476 5.7609 22 1 2.7228 2.8362 4.4223 23 1 2.1721 4.0662 6.4383 24 1 2.7891 1.7251 6.5767 25 7 2.0184 -0.6907 -1.1961 26 6 2.8558 0.0632 -2.1263 27 6 3.6414 -0.8917 -3.0260 28 6 2.6687 -1.9065 -3.6387 29 6 2.1403 -2.8070 -2.5194 30 6 1.6715 -1.9670 -1.3662 31 8 0.9384 -2.4768 -0.5454 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.1493 0.5391 2.5435 36 1 0.3158 -2.0379 3.4479 37 1 1.6559 -2.9977 4.1535 38 1 1.7722 -1.6865 7.4835 39 1 2.4092 -2.8167 6.2476 40 1 3.9269 -1.2047 5.5583 41 1 3.2880 -0.0754 6.7961 42 1 -0.3644 4.1237 5.3277 43 1 3.5532 0.6858 -1.5659 44 1 2.2236 0.7016 -2.7435 45 1 4.3926 -1.4160 -2.4352 46 1 4.1295 -0.3273 -3.8204 47 1 1.8381 -1.3805 -4.1094 48 1 3.1889 -2.5112 -4.3815 49 1 1.3083 -3.4021 -2.8957 50 1 2.9367 -3.4706 -2.1822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098457226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:44 Heat of formation + Delta-G solvation = -12.465812 kcal Electronic energy + Delta-G solvation = -31334.114835 eV Core-core repulsion = 27362.953637 eV Total energy + Delta-G solvation = -3971.161198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.93467 -39.76873 -38.21581 -36.43919 -34.62698 -33.75833 -32.59736 -30.76635 -29.67481 -29.60960 -29.16440 -27.99555 -24.83359 -24.34335 -23.94208 -22.72327 -21.44142 -20.24061 -19.85053 -18.93206 -18.46334 -17.28079 -17.05983 -17.02474 -16.06114 -15.81609 -15.55735 -14.86487 -14.52625 -14.38762 -14.17104 -13.99649 -13.90675 -13.58541 -13.40842 -13.35302 -13.10297 -12.66333 -12.32169 -12.24613 -12.13773 -11.97419 -11.64864 -11.44576 -11.40313 -11.23315 -11.19233 -11.14369 -11.10114 -11.01851 -10.84451 -10.35092 -10.24118 -9.86381 -9.65836 -9.41690 -9.36838 -9.29570 -8.91287 -8.59790 -8.44008 -7.27212 -5.96300 -3.20883 2.71494 2.93789 3.06973 3.23242 3.42624 3.44388 3.73464 4.42827 4.47520 4.48223 4.50033 4.61232 4.65160 4.98008 5.07596 5.09238 5.15983 5.18185 5.26811 5.29581 5.37235 5.43393 5.46040 5.57306 5.62860 5.64506 5.66205 5.73900 5.75197 5.84601 5.85909 5.92918 5.96114 5.99523 6.09644 6.23677 6.26635 6.32830 6.46657 6.49376 6.55507 6.71737 6.81889 6.90318 7.13154 7.35858 7.51598 8.05069 8.27290 8.34146 8.68714 8.71261 9.60799 10.22108 11.20013 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.003742 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.213877 B = 7480.326993 C = 8093.832250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 H 0.107 0.893 4 C 0.511 3.489 5 O -0.538 6.538 6 N -0.708 5.708 7 C 0.136 3.864 8 H 0.082 0.918 9 C -0.134 4.134 10 C 0.140 3.860 11 H 0.096 0.904 12 C -0.133 4.133 13 C -0.134 4.134 14 C 0.115 3.885 15 H 0.094 0.906 16 N -0.606 5.606 17 C -0.221 4.221 18 H 0.098 0.902 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 0.867 3.133 22 H -0.291 1.291 23 H -0.305 1.305 24 H -0.261 1.261 25 N -0.592 5.592 26 C 0.115 3.885 27 C -0.136 4.136 28 C -0.122 4.122 29 C -0.132 4.132 30 C 0.526 3.474 31 O -0.533 6.533 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.261 0.739 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -7.142 -16.377 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 H 0.125 0.875 4 C 0.295 3.705 5 O -0.414 6.414 6 N -0.359 5.359 7 C 0.029 3.971 8 H 0.100 0.900 9 C -0.174 4.174 10 C 0.033 3.967 11 H 0.114 0.886 12 C -0.172 4.172 13 C -0.173 4.173 14 C 0.008 3.992 15 H 0.111 0.889 16 N -0.328 5.328 17 C -0.347 4.347 18 H 0.116 0.884 19 C -0.182 4.182 20 N -0.557 5.557 21 Si 0.699 3.301 22 H -0.220 1.220 23 H -0.233 1.233 24 H -0.186 1.186 25 N -0.326 5.326 26 C -0.008 4.008 27 C -0.173 4.173 28 C -0.160 4.160 29 C -0.172 4.172 30 C 0.314 3.686 31 O -0.409 6.409 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.162 -7.815 -16.000 19.588 hybrid contribution 0.912 1.045 0.221 1.404 sum 9.075 -6.770 -15.779 19.421 Atomic orbital electron populations 1.22195 0.92148 1.05324 1.02794 1.20982 0.96740 0.96215 0.84402 0.87498 1.20577 0.80375 0.84802 0.84766 1.90622 1.38512 1.25770 1.86543 1.45941 1.52981 1.32075 1.04857 1.22439 0.96826 0.93606 0.84212 0.89958 1.23314 0.98939 0.96913 0.98281 1.22978 0.96018 0.84780 0.92895 0.88635 1.22988 0.97129 0.97135 0.99959 1.23044 0.97191 0.97992 0.99116 1.23372 0.87618 0.96262 0.91965 0.88892 1.46910 1.10117 1.01443 1.74365 1.18681 0.90027 0.84291 1.41723 0.88413 1.24696 0.96699 0.95281 1.01552 1.69832 1.32604 1.00600 1.52660 0.87180 0.87610 0.77407 0.77890 1.22036 1.23322 1.18591 1.47144 1.51436 1.11646 1.22331 1.21484 0.93457 0.94232 0.91598 1.21868 0.98358 0.97868 0.99245 1.21648 0.99339 0.97548 0.97456 1.21638 1.03184 0.98363 0.93980 1.19903 0.80396 0.81250 0.87037 1.90685 1.36470 1.69802 1.43939 0.91988 0.89301 0.90618 0.75845 0.91470 0.91999 0.92193 0.92380 0.92358 0.91371 0.92855 0.90760 0.91581 0.90754 0.89875 0.91170 0.90704 0.88542 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.98 37.16 0.33 -2.05 16 2 C 0.12 1.78 3.02 -69.08 -0.21 1.57 16 3 H 0.11 1.27 7.79 -51.93 -0.40 0.86 16 4 C 0.51 9.24 6.41 -10.98 -0.07 9.17 16 5 O -0.54 -11.24 14.20 -15.22 -0.22 -11.46 16 6 N -0.71 -13.21 4.97 -51.40 -0.26 -13.47 16 7 C 0.14 2.61 2.80 -65.44 -0.18 2.42 16 8 H 0.08 1.59 7.23 -51.93 -0.38 1.21 16 9 C -0.13 -2.50 6.23 -24.24 -0.15 -2.65 16 10 C 0.14 2.70 5.48 -62.80 -0.34 2.35 16 11 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 12 C -0.13 -2.28 6.44 -24.24 -0.16 -2.44 16 13 C -0.13 -2.46 6.21 -24.24 -0.15 -2.61 16 14 C 0.12 2.39 3.16 -62.80 -0.20 2.19 16 15 H 0.09 2.08 3.47 -51.93 -0.18 1.90 16 16 N -0.61 -13.78 2.85 -145.82 -0.42 -14.20 16 17 C -0.22 -5.92 10.94 -15.06 -0.16 -6.08 16 18 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 19 C 0.02 0.42 5.49 -17.43 -0.10 0.32 16 20 N -0.91 -26.98 13.97 55.49 0.78 -26.21 16 21 Si 0.87 21.27 24.62 -169.99 -4.19 17.09 16 22 H -0.29 -6.95 6.76 56.52 0.38 -6.57 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.26 -6.12 4.83 56.52 0.27 -5.85 16 25 N -0.59 -7.63 2.62 -168.40 -0.44 -8.07 16 26 C 0.12 1.00 6.28 -4.29 -0.03 0.98 16 27 C -0.14 -0.96 6.01 -26.59 -0.16 -1.12 16 28 C -0.12 -0.86 6.03 -26.52 -0.16 -1.02 16 29 C -0.13 -1.35 6.03 -28.10 -0.17 -1.52 16 30 C 0.53 7.69 6.12 -11.87 -0.07 7.62 16 31 O -0.53 -10.12 12.86 -15.22 -0.20 -10.32 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.51 5.84 -51.93 -0.30 1.20 16 34 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 35 H 0.41 7.74 8.08 -40.82 -0.33 7.41 16 36 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 37 H 0.06 1.07 7.82 -51.93 -0.41 0.66 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.86 7.82 -51.93 -0.41 0.46 16 40 H 0.06 0.94 7.82 -51.93 -0.41 0.53 16 41 H 0.07 1.32 6.58 -51.93 -0.34 0.97 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.10 1.00 8.14 -51.92 -0.42 0.57 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -33.98 374.21 -9.58 -43.56 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -8.31 Total: 10.28 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -1.98 Total: 7.15 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.34 Total: -61.94 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.41 Total: -21.77 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.19 Total: 17.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.98 -9.58 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098457226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.092 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds