Wall clock time and date at job start Tue Mar 31 2020 19:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46980 * 2 1 4 4 C 1.50708 * 109.47331 * 119.99371 * 2 1 3 5 5 O 1.21279 * 120.00162 * 120.00213 * 4 2 1 6 6 N 1.34780 * 119.99713 * 300.00645 * 4 2 1 7 7 C 1.46501 * 119.99810 * 179.97438 * 6 4 2 8 8 H 1.08995 * 110.55661 * 32.09843 * 7 6 4 9 9 C 1.54849 * 110.62494 * 269.02106 * 7 6 4 10 10 C 1.55839 * 103.44654 * 241.51015 * 9 7 6 11 11 H 1.09005 * 116.13263 * 159.14790 * 10 9 7 12 12 C 1.55845 * 105.06837 * 288.17784 * 10 9 7 13 13 C 1.54848 * 103.44247 * 71.82090 * 12 10 9 14 14 C 1.55844 * 110.62387 * 154.99792 * 7 6 4 15 15 H 1.09004 * 115.56543 * 319.67607 * 14 7 6 16 16 N 1.50234 * 101.05162 * 85.55150 * 14 7 6 17 17 C 1.36940 * 130.84040 * 233.94594 * 16 14 7 18 18 H 1.07997 * 120.00320 * 171.60055 * 17 16 14 19 19 C 1.38819 * 119.99427 * 351.59445 * 17 16 14 20 20 N 1.31621 * 119.99212 * 157.94446 * 19 17 16 21 21 Si 1.86797 * 120.00519 * 337.94942 * 19 17 16 22 22 H 1.48494 * 109.47179 * 93.13046 * 21 19 17 23 23 H 1.48498 * 109.47226 * 213.13270 * 21 19 17 24 24 H 1.48500 * 109.46899 * 333.13198 * 21 19 17 25 25 N 1.46498 * 109.47299 * 239.99502 * 2 1 3 26 26 C 1.46118 * 117.87719 * 120.04424 * 25 2 1 27 27 C 1.52925 * 110.29040 * 160.98706 * 26 25 2 28 28 C 1.53338 * 108.80950 * 50.69145 * 27 26 25 29 29 C 1.53068 * 108.42699 * 292.39155 * 28 27 26 30 30 C 1.33351 * 117.94771 * 299.99545 * 25 2 1 31 31 O 1.21282 * 118.24538 * 2.20441 * 30 25 2 32 32 H 1.09000 * 109.46943 * 60.00756 * 1 2 3 33 33 H 1.09003 * 109.46659 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47531 * 300.00308 * 1 2 3 35 35 H 0.96997 * 119.99918 * 359.97438 * 6 4 2 36 36 H 1.09005 * 110.62878 * 0.02562 * 9 7 6 37 37 H 1.08997 * 110.62404 * 123.02072 * 9 7 6 38 38 H 1.08993 * 110.63202 * 190.31244 * 12 10 9 39 39 H 1.08998 * 110.61987 * 313.17686 * 12 10 9 40 40 H 1.09002 * 110.62571 * 241.51220 * 13 12 10 41 41 H 1.09003 * 110.62553 * 118.49570 * 13 12 10 42 42 H 0.96999 * 119.99790 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.51371 * 40.66143 * 26 25 2 44 44 H 1.09000 * 109.28580 * 281.16813 * 26 25 2 45 45 H 1.09007 * 109.59867 * 290.85540 * 27 26 25 46 46 H 1.08992 * 109.60127 * 170.53620 * 27 26 25 47 47 H 1.08997 * 109.67336 * 52.12435 * 28 27 26 48 48 H 1.09002 * 109.67514 * 172.65443 * 28 27 26 49 49 H 1.09002 * 109.40583 * 169.03390 * 29 28 27 50 50 H 1.09008 * 109.39984 * 288.85503 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6963 1.1194 6 7 1.7067 -0.2497 2.4547 7 6 2.1946 -0.9405 3.6509 8 1 3.1724 -1.3845 3.4644 9 6 1.1812 -2.0174 4.1103 10 6 0.7703 -1.5432 5.5368 11 1 -0.1744 -1.9311 5.9181 12 6 2.0183 -1.8156 6.4296 13 6 3.0316 -0.7387 5.9700 14 6 2.2579 0.0378 4.8623 15 1 2.6193 1.0415 4.6381 16 7 0.8497 -0.0513 5.3783 17 6 -0.0762 0.9263 5.6278 18 1 -1.0931 0.6572 5.8725 19 6 0.2925 2.2632 5.5664 20 7 -0.6219 3.1896 5.3710 21 14 2.0860 2.7476 5.7609 22 1 2.7228 2.8362 4.4223 23 1 2.1721 4.0662 6.4383 24 1 2.7891 1.7251 6.5767 25 7 2.0184 -0.6907 -1.1961 26 6 2.8558 0.0632 -2.1263 27 6 3.6414 -0.8917 -3.0260 28 6 2.6687 -1.9065 -3.6387 29 6 2.1403 -2.8070 -2.5194 30 6 1.6715 -1.9670 -1.3662 31 8 0.9384 -2.4768 -0.5454 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.1493 0.5391 2.5435 36 1 0.3158 -2.0379 3.4479 37 1 1.6559 -2.9977 4.1535 38 1 1.7722 -1.6865 7.4835 39 1 2.4092 -2.8167 6.2476 40 1 3.9269 -1.2047 5.5583 41 1 3.2880 -0.0754 6.7961 42 1 -0.3644 4.1237 5.3277 43 1 3.5532 0.6858 -1.5659 44 1 2.2236 0.7016 -2.7435 45 1 4.3926 -1.4160 -2.4352 46 1 4.1295 -0.3273 -3.8204 47 1 1.8381 -1.3805 -4.1094 48 1 3.1889 -2.5112 -4.3815 49 1 1.3083 -3.4021 -2.8957 50 1 2.9367 -3.4706 -2.1822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098457226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:43 Heat of formation + Delta-G solvation = -34.785963 kcal Electronic energy + Delta-G solvation = -31335.082709 eV Core-core repulsion = 27362.953637 eV Total energy + Delta-G solvation = -3972.129072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.09409 -41.24387 -39.61396 -37.40329 -35.64189 -35.28477 -34.58559 -31.81144 -31.51934 -30.74131 -30.44070 -29.46612 -26.05520 -25.72391 -25.19989 -23.75502 -22.68547 -21.97376 -21.16718 -20.50104 -19.43878 -18.94121 -18.58985 -18.14287 -17.51774 -17.03781 -16.68328 -16.37298 -15.86511 -15.58187 -15.33581 -15.31936 -15.08135 -14.88346 -14.74922 -14.61258 -14.26556 -14.18417 -13.92586 -13.44705 -13.30950 -13.24253 -13.01879 -12.88018 -12.86944 -12.81567 -12.57676 -12.42727 -12.01082 -11.98473 -11.87391 -11.85432 -11.77888 -11.52687 -11.27602 -11.13667 -10.90149 -10.78944 -10.46748 -10.00137 -9.69147 -9.21111 -8.10011 -5.30535 1.26417 1.42172 1.49027 1.58757 1.69846 1.94942 2.39391 2.44032 2.92320 3.18296 3.56729 3.72035 3.78014 3.82409 3.85173 3.90312 3.95745 4.01290 4.02369 4.07704 4.24017 4.27971 4.45092 4.46182 4.50749 4.54041 4.57851 4.59961 4.67724 4.68071 4.73678 4.77349 4.88644 4.94543 5.03394 5.07099 5.09187 5.12685 5.18911 5.21844 5.31891 5.35668 5.38606 5.44219 5.55633 5.65659 6.14873 6.52025 6.57191 6.63976 7.20443 7.33551 7.51160 8.24346 9.09908 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.003742 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.213877 B = 7480.326993 C = 8093.832250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.137 0.863 4 C 0.508 3.492 5 O -0.567 6.567 6 N -0.712 5.712 7 C 0.140 3.860 8 H 0.088 0.912 9 C -0.124 4.124 10 C 0.135 3.865 11 H 0.097 0.903 12 C -0.121 4.121 13 C -0.131 4.131 14 C 0.108 3.892 15 H 0.079 0.921 16 N -0.624 5.624 17 C -0.205 4.205 18 H 0.065 0.935 19 C -0.038 4.038 20 N -0.959 5.959 21 Si 0.925 3.075 22 H -0.282 1.282 23 H -0.320 1.320 24 H -0.243 1.243 25 N -0.589 5.589 26 C 0.103 3.897 27 C -0.132 4.132 28 C -0.114 4.114 29 C -0.129 4.129 30 C 0.512 3.488 31 O -0.588 6.588 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.403 0.597 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.259 0.741 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.079 0.921 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.916 -7.778 -18.155 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 H 0.154 0.846 4 C 0.294 3.706 5 O -0.446 6.446 6 N -0.362 5.362 7 C 0.033 3.967 8 H 0.106 0.894 9 C -0.164 4.164 10 C 0.029 3.971 11 H 0.115 0.885 12 C -0.160 4.160 13 C -0.170 4.170 14 C 0.002 3.998 15 H 0.097 0.903 16 N -0.347 5.347 17 C -0.333 4.333 18 H 0.082 0.918 19 C -0.232 4.232 20 N -0.607 5.607 21 Si 0.757 3.243 22 H -0.210 1.210 23 H -0.250 1.250 24 H -0.167 1.167 25 N -0.322 5.322 26 C -0.018 4.018 27 C -0.169 4.169 28 C -0.152 4.152 29 C -0.169 4.169 30 C 0.303 3.697 31 O -0.469 6.469 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.237 0.763 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.133 0.867 47 H 0.098 0.902 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.888 -8.481 -17.809 22.531 hybrid contribution 0.007 1.154 0.736 1.369 sum 10.895 -7.327 -17.074 21.538 Atomic orbital electron populations 1.22071 0.92356 1.03562 1.03475 1.21031 0.96548 0.97281 0.83605 0.84570 1.21229 0.79534 0.84434 0.85428 1.90593 1.39927 1.27068 1.86985 1.46023 1.52959 1.31955 1.05284 1.22380 0.97133 0.93217 0.83933 0.89395 1.23221 0.98109 0.97793 0.97320 1.23199 0.97517 0.82566 0.93824 0.88490 1.22923 0.95294 0.98483 0.99341 1.23049 0.98201 0.97920 0.97865 1.23503 0.86600 0.96272 0.93411 0.90344 1.46932 1.10669 1.02329 1.74774 1.18526 0.89689 0.85348 1.39716 0.91765 1.25219 1.00236 0.95254 1.02448 1.69961 1.34695 1.00754 1.55327 0.86236 0.83332 0.76445 0.78274 1.20972 1.25005 1.16670 1.47331 1.51276 1.11458 1.22086 1.21876 0.93748 0.94659 0.91486 1.21893 0.97797 0.97705 0.99525 1.21654 0.99762 0.97258 0.96482 1.21674 1.03275 0.98343 0.93597 1.20759 0.79582 0.81865 0.87524 1.90659 1.38992 1.71081 1.46133 0.89479 0.92201 0.91690 0.76271 0.93731 0.90022 0.91972 0.89157 0.89415 0.92134 0.93226 0.90088 0.89128 0.92152 0.86702 0.90243 0.88328 0.88117 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 8.98 71.98 0.65 -3.86 16 2 C 0.12 3.44 3.02 44.25 0.13 3.57 16 3 H 0.14 2.96 7.79 -2.39 -0.02 2.94 16 4 C 0.51 18.28 6.41 87.66 0.56 18.85 16 5 O -0.57 -23.63 14.20 16.84 0.24 -23.39 16 6 N -0.71 -26.52 4.97 -434.91 -2.16 -28.68 16 7 C 0.14 5.21 2.80 46.61 0.13 5.34 16 8 H 0.09 3.21 7.23 -2.39 -0.02 3.19 16 9 C -0.12 -4.52 6.23 32.21 0.20 -4.32 16 10 C 0.13 5.03 5.48 46.23 0.25 5.28 16 11 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 12 C -0.12 -3.79 6.44 32.21 0.21 -3.59 16 13 C -0.13 -4.40 6.21 32.21 0.20 -4.20 16 14 C 0.11 4.33 3.16 46.23 0.15 4.48 16 15 H 0.08 3.38 3.47 -2.39 -0.01 3.38 16 16 N -0.62 -28.23 2.85 -615.25 -1.75 -29.98 16 17 C -0.20 -11.24 10.94 84.03 0.92 -10.32 16 18 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 19 C -0.04 -2.15 5.49 84.86 0.47 -1.68 16 20 N -0.96 -58.65 13.97 21.65 0.30 -58.35 16 21 Si 0.93 44.41 24.62 68.60 1.69 46.10 16 22 H -0.28 -12.88 6.76 99.48 0.67 -12.21 16 23 H -0.32 -16.08 7.11 99.48 0.71 -15.37 16 24 H -0.24 -10.78 4.83 99.48 0.48 -10.30 16 25 N -0.59 -14.37 2.62 -805.89 -2.11 -16.48 16 26 C 0.10 1.49 6.28 86.43 0.54 2.03 16 27 C -0.13 -1.41 6.01 30.68 0.18 -1.22 16 28 C -0.11 -1.23 6.03 30.73 0.19 -1.05 16 29 C -0.13 -2.49 6.03 29.71 0.18 -2.31 16 30 C 0.51 14.81 6.12 87.71 0.54 15.35 16 31 O -0.59 -23.01 12.86 16.83 0.22 -22.80 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.11 5.84 -2.39 -0.01 2.10 16 34 H 0.06 1.97 7.56 -2.39 -0.02 1.95 16 35 H 0.40 15.55 8.08 -92.71 -0.75 14.80 16 36 H 0.04 1.81 7.98 -2.38 -0.02 1.79 16 37 H 0.08 2.65 7.82 -2.39 -0.02 2.63 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.09 2.29 7.82 -2.39 -0.02 2.27 16 40 H 0.09 2.45 7.82 -2.39 -0.02 2.43 16 41 H 0.06 2.14 6.58 -2.39 -0.02 2.12 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.08 1.08 8.04 -2.39 -0.02 1.06 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.84 8.12 -2.38 -0.02 0.82 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 0.75 8.13 -2.39 -0.02 0.73 16 48 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 49 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -77.33 374.21 1.86 -75.48 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.06 Total: 35.74 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 5.49 Total: 22.36 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -5.72 Total: -133.49 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: 0.46 Total: -46.19 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.69 Total: 46.10 kcal Total: -77.33 1.86 -75.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098457226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds