Wall clock time and date at job start Tue Mar 31 2020 19:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47070 * 2 1 4 4 C 1.35528 * 125.67945 * 265.75190 * 3 2 1 5 5 C 1.35451 * 108.87255 * 180.02562 * 4 3 2 6 6 C 1.39840 * 107.86648 * 359.74796 * 5 4 3 7 7 C 1.37656 * 125.67420 * 85.78210 * 3 2 1 8 8 C 1.46671 * 126.23580 * 359.97438 * 7 3 2 9 9 O 1.21697 * 120.00382 * 26.22751 * 8 7 3 10 10 N 1.34779 * 119.99679 * 206.23041 * 8 7 3 11 11 C 1.46925 * 120.62771 * 180.98089 * 10 8 7 12 12 C 1.53191 * 108.77768 * 233.58710 * 11 10 8 13 13 C 1.53046 * 109.31309 * 305.36591 * 12 11 10 14 14 N 1.46498 * 109.46122 * 181.38447 * 13 12 11 15 15 C 1.36938 * 119.99930 * 299.93105 * 14 13 12 16 16 H 1.08004 * 119.99827 * 325.63911 * 15 14 13 17 17 C 1.38810 * 119.99905 * 145.63834 * 15 14 13 18 18 N 1.31625 * 119.99893 * 336.11794 * 17 15 14 19 19 Si 1.86799 * 120.00120 * 156.11985 * 17 15 14 20 20 H 1.48500 * 109.47060 * 89.99953 * 19 17 15 21 21 H 1.48495 * 109.47347 * 210.00144 * 19 17 15 22 22 H 1.48504 * 109.47224 * 330.00028 * 19 17 15 23 23 C 1.46496 * 120.00122 * 119.93242 * 14 13 12 24 24 C 1.53006 * 109.47199 * 84.64549 * 23 14 13 25 25 O 1.42895 * 109.46944 * 65.00018 * 24 23 14 26 26 C 1.53044 * 109.53410 * 61.36314 * 13 12 11 27 27 C 1.46921 * 120.63228 * 0.95844 * 10 8 7 28 28 H 1.09004 * 109.47244 * 304.76958 * 1 2 3 29 29 H 1.09002 * 109.46808 * 64.76433 * 1 2 3 30 30 H 1.09000 * 109.47448 * 184.76304 * 1 2 3 31 31 H 1.08996 * 109.46978 * 239.99835 * 2 1 3 32 32 H 1.09004 * 109.46613 * 119.99784 * 2 1 3 33 33 H 1.08005 * 125.56471 * 0.05425 * 4 3 2 34 34 H 1.07999 * 126.06762 * 179.97438 * 5 4 3 35 35 H 1.08001 * 126.45588 * 180.26104 * 6 5 4 36 36 H 1.09004 * 109.59026 * 353.37617 * 11 10 8 37 37 H 1.09010 * 109.58703 * 113.80206 * 11 10 8 38 38 H 1.08993 * 109.49830 * 65.31655 * 12 11 10 39 39 H 1.08998 * 109.49981 * 185.41985 * 12 11 10 40 40 H 1.09000 * 109.45714 * 301.34560 * 13 12 11 41 41 H 0.96999 * 119.99725 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47009 * 204.64500 * 23 14 13 43 43 H 1.09007 * 109.47077 * 324.64855 * 23 14 13 44 44 H 1.08991 * 109.47304 * 185.00436 * 24 23 14 45 45 H 1.08998 * 109.47137 * 305.00271 * 24 23 14 46 46 H 0.96702 * 114.00328 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.49244 * 178.68745 * 26 13 12 48 48 H 1.08993 * 109.52616 * 58.60265 * 26 13 12 49 49 H 1.09005 * 109.58923 * 246.19649 * 27 10 8 50 50 H 1.08997 * 109.58813 * 6.48526 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3587 2.0993 -1.0979 5 6 2.7641 3.3312 -0.7072 6 6 2.6699 3.3920 0.6867 7 6 2.2084 2.1655 1.1152 8 6 1.9594 1.7704 2.5056 9 8 2.0145 0.5972 2.8241 10 7 1.6695 2.7069 3.4306 11 6 1.4387 2.3290 4.8315 12 6 0.0881 2.8964 5.2793 13 6 0.0627 4.4050 5.0228 14 7 -1.2151 4.9565 5.4803 15 6 -2.3886 4.5094 4.9342 16 1 -2.4263 4.2270 3.8924 17 6 -3.5295 4.4190 5.7196 18 7 -3.4214 4.2968 7.0257 19 14 -5.2183 4.4705 4.9229 20 1 -5.6462 3.0905 4.5799 21 1 -6.1936 5.0706 5.8684 22 1 -5.1578 5.2916 3.6870 23 6 -1.2375 5.9863 6.5220 24 6 -1.0311 7.3616 5.8841 25 8 -2.1378 7.6621 5.0315 26 6 0.2263 4.6723 3.5248 27 6 1.5786 4.1250 3.0572 28 1 -0.3634 0.5861 0.8442 29 1 -0.3633 0.4382 -0.9296 30 1 -0.3634 -1.0241 0.0853 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.3136 1.7469 -2.1178 34 1 3.0971 4.1268 -1.3573 35 1 2.9150 4.2391 1.3101 36 1 1.4260 1.2426 4.9197 37 1 2.2325 2.7391 5.4561 38 1 -0.7125 2.4181 4.7152 39 1 -0.0519 2.7060 6.3433 40 1 0.8788 4.8797 5.5676 41 1 -4.2187 4.2340 7.5745 42 1 -2.1994 5.9640 7.0342 43 1 -0.4393 5.7950 7.2393 44 1 -0.9589 8.1176 6.6659 45 1 -0.1121 7.3561 5.2981 46 1 -2.0740 8.5212 4.5922 47 1 0.1848 5.7457 3.3402 48 1 -0.5755 4.1775 2.9768 49 1 2.3837 4.6815 3.5371 50 1 1.6607 4.2238 1.9748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098564152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:00 Heat of formation + Delta-G solvation = 8.592258 kcal Electronic energy + Delta-G solvation = -30809.170195 eV Core-core repulsion = 26838.922143 eV Total energy + Delta-G solvation = -3970.248051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54365 -39.36882 -37.43459 -36.15589 -34.78630 -34.10054 -32.07453 -31.11166 -30.28244 -29.38495 -28.92412 -27.62162 -25.08725 -23.78079 -23.33062 -22.86340 -21.69345 -20.74608 -20.33966 -19.60106 -18.80146 -17.16273 -16.61545 -16.43973 -15.94473 -15.50314 -15.24235 -14.88371 -14.64913 -14.38521 -14.29931 -13.86500 -13.69226 -13.64113 -13.29423 -13.18253 -12.82687 -12.73463 -12.55413 -12.34805 -12.31003 -12.06013 -11.99868 -11.46262 -11.33966 -11.31005 -11.12015 -10.90854 -10.69849 -10.57790 -10.45947 -10.04265 -9.85999 -9.81154 -9.65535 -9.42490 -9.07417 -8.72550 -8.43581 -8.31699 -8.10304 -6.51253 -5.69024 -3.17251 1.57996 2.56229 2.74578 3.35587 3.45522 3.47510 3.52831 3.59551 4.58893 4.59021 4.64511 4.89829 4.93785 5.16846 5.18987 5.26660 5.28188 5.30633 5.36749 5.46865 5.54543 5.56440 5.63037 5.68064 5.78771 5.86160 5.99163 6.00555 6.03193 6.05217 6.10100 6.15240 6.22273 6.31059 6.42722 6.49817 6.65092 6.69695 6.77708 6.83931 6.90547 6.98357 7.16413 7.19564 7.24548 7.63920 7.69812 7.93511 8.34216 8.47381 8.65274 9.28662 9.94442 10.47790 11.34389 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003614 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.505564 B = 7745.807959 C = 8231.560965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.408 5.408 4 C 0.007 3.993 5 C -0.208 4.208 6 C -0.158 4.158 7 C -0.037 4.037 8 C 0.585 3.415 9 O -0.558 6.558 10 N -0.587 5.587 11 C 0.114 3.886 12 C -0.133 4.133 13 C 0.176 3.824 14 N -0.571 5.571 15 C -0.231 4.231 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.292 1.292 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.143 3.857 24 C 0.059 3.941 25 O -0.544 6.544 26 C -0.137 4.137 27 C 0.075 3.925 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.251 0.749 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.349 0.651 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.986 -0.726 -12.167 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.081 5.081 4 C -0.128 4.128 5 C -0.232 4.232 6 C -0.183 4.183 7 C -0.151 4.151 8 C 0.374 3.626 9 O -0.439 6.439 10 N -0.318 5.318 11 C -0.008 4.008 12 C -0.173 4.173 13 C 0.068 3.932 14 N -0.290 5.290 15 C -0.361 4.361 16 H 0.073 0.927 17 C -0.185 4.185 18 N -0.537 5.537 19 Si 0.723 3.277 20 H -0.219 1.219 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.016 3.984 24 C -0.021 4.021 25 O -0.345 6.345 26 C -0.177 4.177 27 C -0.048 4.048 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.182 0.818 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.121 0.879 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.192 0.808 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.082 0.918 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.525 -2.343 -11.583 17.220 hybrid contribution -0.776 0.824 -0.588 1.275 sum 11.749 -1.519 -12.171 16.985 Atomic orbital electron populations 1.22108 0.93989 1.03260 1.02987 1.22095 0.95917 0.79818 1.05170 1.44055 1.47269 1.11645 1.05150 1.21951 1.06032 0.93245 0.91523 1.20821 1.09834 0.97394 0.95158 1.21670 1.05396 0.95814 0.95435 1.20106 1.14194 0.92871 0.87895 1.17021 0.76861 0.85117 0.83559 1.90740 1.54083 1.17625 1.81460 1.47800 1.67660 1.07475 1.08861 1.21792 0.98284 1.01316 0.79457 1.22305 0.94697 0.98451 1.01817 1.20333 0.89218 0.91580 0.92037 1.43747 1.00673 1.40406 1.44189 1.18720 0.86390 1.38729 0.92260 0.92683 1.24917 0.98469 0.99918 0.95164 1.70013 1.27868 1.51742 1.04073 0.86459 0.84894 0.77302 0.78998 1.21939 1.21795 1.20468 1.21013 1.03256 0.83841 0.90251 1.23095 0.87856 0.99477 0.91659 1.86859 1.44979 1.38821 1.63818 1.22334 0.95159 1.00546 0.99708 1.22774 0.98901 0.80058 1.03049 0.91576 0.92190 0.90608 0.89371 0.87304 0.81803 0.84171 0.82599 0.89680 0.92019 0.91124 0.90930 0.93571 0.93916 0.87862 0.94649 0.96330 0.95996 0.80840 0.91450 0.91404 0.91813 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.09 1.00 6.47 -4.04 -0.03 0.97 16 3 N -0.41 -5.16 2.76 -112.87 -0.31 -5.47 16 4 C 0.01 0.08 11.37 -16.91 -0.19 -0.12 16 5 C -0.21 -2.26 10.81 -39.98 -0.43 -2.69 16 6 C -0.16 -1.96 8.55 -39.11 -0.33 -2.29 16 7 C -0.04 -0.53 6.52 -81.98 -0.53 -1.07 16 8 C 0.59 9.78 7.55 -12.86 -0.10 9.69 16 9 O -0.56 -10.56 14.47 5.19 0.08 -10.48 16 10 N -0.59 -9.32 2.97 -174.31 -0.52 -9.83 16 11 C 0.11 1.86 6.43 -3.71 -0.02 1.84 16 12 C -0.13 -2.57 5.31 -26.61 -0.14 -2.71 16 13 C 0.18 3.42 2.59 -67.88 -0.18 3.24 16 14 N -0.57 -13.39 2.34 -165.61 -0.39 -13.78 16 15 C -0.23 -6.17 8.03 -15.06 -0.12 -6.29 16 16 H 0.06 1.52 6.88 -52.48 -0.36 1.16 16 17 C 0.01 0.39 4.87 -17.43 -0.08 0.31 16 18 N -0.89 -25.64 11.48 55.49 0.64 -25.01 16 19 Si 0.89 22.47 29.62 -169.99 -5.03 17.44 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 C 0.14 3.24 5.58 -4.04 -0.02 3.22 16 24 C 0.06 1.14 7.39 37.16 0.27 1.41 16 25 O -0.54 -11.18 13.39 -35.23 -0.47 -11.65 16 26 C -0.14 -2.38 5.30 -26.61 -0.14 -2.52 16 27 C 0.07 1.05 5.36 -3.71 -0.02 1.03 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.11 1.40 6.38 -51.93 -0.33 1.07 16 33 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.16 1.68 5.78 -52.49 -0.30 1.38 16 36 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 37 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 38 H 0.07 1.58 7.71 -51.93 -0.40 1.18 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.10 2.75 5.44 -51.93 -0.28 2.47 16 43 H 0.04 0.75 8.04 -51.92 -0.42 0.33 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.35 5.19 9.12 45.56 0.42 5.61 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.07 1.36 7.03 -51.93 -0.37 0.99 16 49 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.11 1.43 3.39 -51.93 -0.18 1.25 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -32.96 391.19 -9.01 -41.97 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.20 Total: 8.34 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.69 Total: 2.58 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.58 Total: -54.08 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.40 Total: -22.14 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.96 -9.01 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098564152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.560 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds