Wall clock time and date at job start Tue Mar 31 2020 19:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47070 * 2 1 4 4 C 1.35528 * 125.67945 * 265.75190 * 3 2 1 5 5 C 1.35451 * 108.87255 * 180.02562 * 4 3 2 6 6 C 1.39840 * 107.86648 * 359.74796 * 5 4 3 7 7 C 1.37656 * 125.67420 * 85.78210 * 3 2 1 8 8 C 1.46671 * 126.23580 * 359.97438 * 7 3 2 9 9 O 1.21697 * 120.00382 * 26.22751 * 8 7 3 10 10 N 1.34779 * 119.99679 * 206.23041 * 8 7 3 11 11 C 1.46925 * 120.62771 * 180.98089 * 10 8 7 12 12 C 1.53191 * 108.77768 * 233.58710 * 11 10 8 13 13 C 1.53046 * 109.31309 * 305.36591 * 12 11 10 14 14 N 1.46498 * 109.46122 * 181.38447 * 13 12 11 15 15 C 1.36938 * 119.99930 * 299.93105 * 14 13 12 16 16 H 1.08004 * 119.99827 * 325.63911 * 15 14 13 17 17 C 1.38810 * 119.99905 * 145.63834 * 15 14 13 18 18 N 1.31625 * 119.99893 * 336.11794 * 17 15 14 19 19 Si 1.86799 * 120.00120 * 156.11985 * 17 15 14 20 20 H 1.48500 * 109.47060 * 89.99953 * 19 17 15 21 21 H 1.48495 * 109.47347 * 210.00144 * 19 17 15 22 22 H 1.48504 * 109.47224 * 330.00028 * 19 17 15 23 23 C 1.46496 * 120.00122 * 119.93242 * 14 13 12 24 24 C 1.53006 * 109.47199 * 84.64549 * 23 14 13 25 25 O 1.42895 * 109.46944 * 65.00018 * 24 23 14 26 26 C 1.53044 * 109.53410 * 61.36314 * 13 12 11 27 27 C 1.46921 * 120.63228 * 0.95844 * 10 8 7 28 28 H 1.09004 * 109.47244 * 304.76958 * 1 2 3 29 29 H 1.09002 * 109.46808 * 64.76433 * 1 2 3 30 30 H 1.09000 * 109.47448 * 184.76304 * 1 2 3 31 31 H 1.08996 * 109.46978 * 239.99835 * 2 1 3 32 32 H 1.09004 * 109.46613 * 119.99784 * 2 1 3 33 33 H 1.08005 * 125.56471 * 0.05425 * 4 3 2 34 34 H 1.07999 * 126.06762 * 179.97438 * 5 4 3 35 35 H 1.08001 * 126.45588 * 180.26104 * 6 5 4 36 36 H 1.09004 * 109.59026 * 353.37617 * 11 10 8 37 37 H 1.09010 * 109.58703 * 113.80206 * 11 10 8 38 38 H 1.08993 * 109.49830 * 65.31655 * 12 11 10 39 39 H 1.08998 * 109.49981 * 185.41985 * 12 11 10 40 40 H 1.09000 * 109.45714 * 301.34560 * 13 12 11 41 41 H 0.96999 * 119.99725 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47009 * 204.64500 * 23 14 13 43 43 H 1.09007 * 109.47077 * 324.64855 * 23 14 13 44 44 H 1.08991 * 109.47304 * 185.00436 * 24 23 14 45 45 H 1.08998 * 109.47137 * 305.00271 * 24 23 14 46 46 H 0.96702 * 114.00328 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.49244 * 178.68745 * 26 13 12 48 48 H 1.08993 * 109.52616 * 58.60265 * 26 13 12 49 49 H 1.09005 * 109.58923 * 246.19649 * 27 10 8 50 50 H 1.08997 * 109.58813 * 6.48526 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3587 2.0993 -1.0979 5 6 2.7641 3.3312 -0.7072 6 6 2.6699 3.3920 0.6867 7 6 2.2084 2.1655 1.1152 8 6 1.9594 1.7704 2.5056 9 8 2.0145 0.5972 2.8241 10 7 1.6695 2.7069 3.4306 11 6 1.4387 2.3290 4.8315 12 6 0.0881 2.8964 5.2793 13 6 0.0627 4.4050 5.0228 14 7 -1.2151 4.9565 5.4803 15 6 -2.3886 4.5094 4.9342 16 1 -2.4263 4.2270 3.8924 17 6 -3.5295 4.4190 5.7196 18 7 -3.4214 4.2968 7.0257 19 14 -5.2183 4.4705 4.9229 20 1 -5.6462 3.0905 4.5799 21 1 -6.1936 5.0706 5.8684 22 1 -5.1578 5.2916 3.6870 23 6 -1.2375 5.9863 6.5220 24 6 -1.0311 7.3616 5.8841 25 8 -2.1378 7.6621 5.0315 26 6 0.2263 4.6723 3.5248 27 6 1.5786 4.1250 3.0572 28 1 -0.3634 0.5861 0.8442 29 1 -0.3633 0.4382 -0.9296 30 1 -0.3634 -1.0241 0.0853 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.3136 1.7469 -2.1178 34 1 3.0971 4.1268 -1.3573 35 1 2.9150 4.2391 1.3101 36 1 1.4260 1.2426 4.9197 37 1 2.2325 2.7391 5.4561 38 1 -0.7125 2.4181 4.7152 39 1 -0.0519 2.7060 6.3433 40 1 0.8788 4.8797 5.5676 41 1 -4.2187 4.2340 7.5745 42 1 -2.1994 5.9640 7.0342 43 1 -0.4393 5.7950 7.2393 44 1 -0.9589 8.1176 6.6659 45 1 -0.1121 7.3561 5.2981 46 1 -2.0740 8.5212 4.5922 47 1 0.1848 5.7457 3.3402 48 1 -0.5755 4.1775 2.9768 49 1 2.3837 4.6815 3.5371 50 1 1.6607 4.2238 1.9748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098564152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:59 Heat of formation + Delta-G solvation = -13.172935 kcal Electronic energy + Delta-G solvation = -30810.114004 eV Core-core repulsion = 26838.922143 eV Total energy + Delta-G solvation = -3971.191861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49887 -40.62650 -38.95502 -37.65230 -36.31249 -35.12674 -33.79596 -32.55590 -31.90002 -30.27240 -30.05724 -29.29297 -26.69921 -25.20318 -24.45770 -24.18008 -23.00831 -21.96768 -21.69189 -21.05092 -19.94599 -18.44293 -18.15648 -17.89719 -17.41559 -16.73909 -16.62075 -16.36390 -16.01587 -15.74304 -15.56686 -15.31485 -15.01356 -14.80442 -14.75415 -14.46573 -14.31317 -14.04932 -13.71120 -13.68659 -13.41523 -13.16210 -13.08212 -13.02768 -12.93140 -12.75323 -12.68458 -12.43469 -12.31067 -12.21329 -12.09859 -11.79306 -11.56867 -11.45286 -11.13935 -10.92485 -10.59165 -10.35849 -9.71434 -9.60607 -9.07149 -8.47631 -7.75629 -5.25649 0.55594 1.41130 1.44969 1.54415 1.57306 1.89563 2.27990 2.34061 2.56509 3.34688 3.51033 3.60081 3.78630 3.86326 3.99829 4.04410 4.17723 4.19641 4.24024 4.34324 4.36496 4.42756 4.45399 4.49799 4.61091 4.65114 4.69099 4.71865 4.79343 4.81648 4.85933 4.91433 4.95648 5.07501 5.11136 5.12834 5.18599 5.21887 5.31960 5.45424 5.59967 5.64831 5.76121 5.85327 5.90639 6.06036 6.36255 6.43626 6.53743 7.10313 7.23811 7.30372 7.99991 8.46382 9.22569 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003614 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.505564 B = 7745.807959 C = 8231.560965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 N -0.417 5.417 4 C 0.020 3.980 5 C -0.216 4.216 6 C -0.151 4.151 7 C -0.082 4.082 8 C 0.579 3.421 9 O -0.593 6.593 10 N -0.591 5.591 11 C 0.125 3.875 12 C -0.120 4.120 13 C 0.172 3.828 14 N -0.584 5.584 15 C -0.217 4.217 16 H 0.040 0.960 17 C -0.035 4.035 18 N -0.920 5.920 19 Si 0.938 3.062 20 H -0.293 1.293 21 H -0.294 1.294 22 H -0.279 1.279 23 C 0.136 3.864 24 C 0.069 3.931 25 O -0.577 6.577 26 C -0.124 4.124 27 C 0.083 3.917 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.202 0.798 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.245 0.755 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.375 0.625 47 H 0.076 0.924 48 H 0.031 0.969 49 H 0.097 0.903 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.345 0.872 -14.813 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.030 4.030 3 N -0.091 5.091 4 C -0.115 4.115 5 C -0.240 4.240 6 C -0.177 4.177 7 C -0.195 4.195 8 C 0.370 3.630 9 O -0.476 6.476 10 N -0.322 5.322 11 C 0.002 3.998 12 C -0.160 4.160 13 C 0.065 3.935 14 N -0.303 5.303 15 C -0.348 4.348 16 H 0.058 0.942 17 C -0.231 4.231 18 N -0.566 5.566 19 Si 0.769 3.231 20 H -0.221 1.221 21 H -0.221 1.221 22 H -0.205 1.205 23 C 0.010 3.990 24 C -0.011 4.011 25 O -0.382 6.382 26 C -0.164 4.164 27 C -0.038 4.038 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.145 0.855 32 H 0.101 0.899 33 H 0.219 0.781 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.221 0.779 47 H 0.095 0.905 48 H 0.050 0.950 49 H 0.115 0.885 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.903 -0.704 -14.246 20.629 hybrid contribution -1.458 0.331 0.149 1.502 sum 13.445 -0.373 -14.097 19.485 Atomic orbital electron populations 1.22056 0.94343 1.03483 1.01815 1.22148 0.95556 0.79584 1.05735 1.44268 1.47431 1.12086 1.05294 1.22685 1.03492 0.92913 0.92414 1.21218 1.09714 0.98354 0.94673 1.21968 1.03878 0.95189 0.96653 1.19987 1.17635 0.94553 0.87283 1.17462 0.76171 0.84661 0.84705 1.90709 1.55745 1.19020 1.82176 1.47865 1.67560 1.08304 1.08427 1.21597 0.97099 1.00492 0.80641 1.22115 0.95293 0.98733 0.99901 1.20550 0.88123 0.91090 0.93690 1.43926 1.01071 1.41134 1.44176 1.18718 0.87803 1.36788 0.91491 0.94249 1.25405 1.00748 1.01310 0.95610 1.70118 1.27765 1.53918 1.04787 0.85735 0.82376 0.76935 0.78084 1.22103 1.22073 1.20460 1.20995 1.01556 0.85984 0.90446 1.22870 0.88157 0.97614 0.92409 1.86777 1.45916 1.41045 1.64446 1.22147 0.96079 1.00804 0.97367 1.22882 0.97646 0.78976 1.04324 0.95698 0.90697 0.89248 0.85524 0.89944 0.78085 0.81451 0.81081 0.91086 0.89108 0.95315 0.92835 0.91077 0.94610 0.91911 0.93508 0.93723 0.93744 0.77915 0.90535 0.95031 0.88496 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.24 71.98 0.74 -2.71 16 2 C 0.09 1.89 6.47 86.38 0.56 2.45 16 3 N -0.42 -9.83 2.76 -511.02 -1.41 -11.24 16 4 C 0.02 0.35 11.37 83.48 0.95 1.30 16 5 C -0.22 -3.86 10.81 22.01 0.24 -3.62 16 6 C -0.15 -3.33 8.55 22.57 0.19 -3.14 16 7 C -0.08 -2.29 6.52 40.35 0.26 -2.02 16 8 C 0.58 19.54 7.55 86.44 0.65 20.20 16 9 O -0.59 -23.38 14.47 -4.34 -0.06 -23.44 16 10 N -0.59 -18.49 2.97 -823.59 -2.45 -20.94 16 11 C 0.12 4.09 6.43 86.36 0.56 4.65 16 12 C -0.12 -4.82 5.31 30.67 0.16 -4.66 16 13 C 0.17 6.59 2.59 45.02 0.12 6.70 16 14 N -0.58 -27.56 2.34 -677.86 -1.59 -29.15 16 15 C -0.22 -11.90 8.03 84.03 0.67 -11.23 16 16 H 0.04 2.27 6.88 -2.91 -0.02 2.25 16 17 C -0.03 -2.00 4.87 84.86 0.41 -1.59 16 18 N -0.92 -54.76 11.48 21.65 0.25 -54.51 16 19 Si 0.94 47.54 29.62 68.60 2.03 49.57 16 20 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 21 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 22 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 23 C 0.14 6.14 5.58 86.38 0.48 6.62 16 24 C 0.07 2.48 7.39 71.98 0.53 3.02 16 25 O -0.58 -22.82 13.39 -148.98 -1.99 -24.81 16 26 C -0.12 -4.17 5.30 30.68 0.16 -4.00 16 27 C 0.08 2.15 5.36 86.37 0.46 2.61 16 28 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.13 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.08 2.19 6.38 -2.38 -0.02 2.17 16 33 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.17 3.07 5.78 -2.91 -0.02 3.05 16 36 H 0.07 2.54 7.00 -2.38 -0.02 2.53 16 37 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.03 1.36 7.71 -2.39 -0.02 1.34 16 39 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.40 7.86 -2.39 -0.02 2.38 16 41 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.06 3.41 5.44 -2.39 -0.01 3.40 16 43 H 0.05 1.94 8.04 -2.38 -0.02 1.92 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.37 10.26 9.12 -74.06 -0.68 9.59 16 47 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.03 1.28 7.03 -2.39 -0.02 1.26 16 49 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 50 H 0.13 2.92 3.39 -2.39 -0.01 2.91 16 Total: -1.00 -76.40 391.19 2.20 -74.20 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.27 Total: 25.75 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 7.15 Total: 14.58 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -5.20 Total: -115.84 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.06 Total: -48.26 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -76.40 2.20 -74.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098564152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.029 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds