Wall clock time and date at job start Tue Mar 31 2020 19:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47244 * 2 1 4 4 C 1.46765 * 124.35470 * 270.05207 * 3 2 1 5 5 C 1.54831 * 105.49704 * 197.01816 * 4 3 2 6 6 H 1.08994 * 111.01534 * 92.61619 * 5 4 3 7 7 C 1.50700 * 111.07389 * 216.48709 * 5 4 3 8 8 O 1.21278 * 120.00086 * 353.69725 * 7 5 4 9 9 N 1.34781 * 119.99823 * 173.69803 * 7 5 4 10 10 C 1.46496 * 120.00018 * 179.97438 * 9 7 5 11 11 C 1.54317 * 111.69440 * 298.98479 * 10 9 7 12 12 C 1.55042 * 103.93959 * 262.78638 * 11 10 9 13 13 C 1.55052 * 102.11438 * 319.94950 * 12 11 10 14 14 C 1.54323 * 103.93801 * 40.05246 * 13 12 11 15 15 H 1.08999 * 111.01795 * 96.81406 * 14 13 12 16 16 C 1.53779 * 109.79085 * 221.69416 * 14 13 12 17 17 N 1.47212 * 106.37708 * 95.21850 * 16 14 13 18 18 C 1.36946 * 126.69984 * 211.28378 * 17 16 14 19 19 H 1.07998 * 119.99562 * 180.02562 * 18 17 16 20 20 C 1.38802 * 119.99917 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00405 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46705 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47063 * 120.00130 * 22 20 18 25 25 H 1.48502 * 109.46857 * 240.00217 * 22 20 18 26 26 C 1.48676 * 107.09568 * 30.73849 * 17 16 14 27 27 C 1.54631 * 101.60220 * 334.56264 * 5 4 3 28 28 C 1.34418 * 124.34952 * 90.02825 * 3 2 1 29 29 O 1.21288 * 124.94305 * 359.64879 * 28 3 2 30 30 H 1.08999 * 109.47188 * 59.99823 * 1 2 3 31 31 H 1.09000 * 109.47506 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46922 * 299.99831 * 1 2 3 33 33 H 1.09002 * 109.46922 * 240.00168 * 2 1 3 34 34 H 1.08999 * 109.47188 * 120.00176 * 2 1 3 35 35 H 1.09001 * 110.23936 * 315.99466 * 4 3 2 36 36 H 1.08998 * 110.24401 * 77.90012 * 4 3 2 37 37 H 0.97009 * 119.99542 * 359.97438 * 9 7 5 38 38 H 1.08999 * 110.53398 * 21.40707 * 11 10 9 39 39 H 1.09001 * 110.53303 * 144.02929 * 11 10 9 40 40 H 1.09003 * 110.90664 * 78.14865 * 12 11 10 41 41 H 1.09004 * 110.91071 * 201.70691 * 12 11 10 42 42 H 1.08998 * 110.53776 * 158.67019 * 13 12 11 43 43 H 1.09005 * 110.53460 * 281.30049 * 13 12 11 44 44 H 1.08996 * 110.07280 * 214.44239 * 16 14 13 45 45 H 1.09002 * 110.07488 * 335.93254 * 16 14 13 46 46 H 0.96997 * 120.00285 * 179.97438 * 21 20 18 47 47 H 1.08994 * 110.90963 * 210.52583 * 26 17 16 48 48 H 1.08996 * 109.93960 * 88.51971 * 26 17 16 49 49 H 1.09002 * 110.48855 * 266.08223 * 27 5 4 50 50 H 1.08998 * 110.48570 * 143.57284 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2934 2.1624 -1.2116 5 6 3.1759 3.3472 -0.7485 6 1 4.2347 3.1067 -0.8439 7 6 2.8396 4.6035 -1.5099 8 8 2.0554 4.5608 -2.4340 9 7 3.4104 5.7744 -1.1638 10 6 3.0839 6.9955 -1.9043 11 6 3.4736 6.8812 -3.3931 12 6 4.8558 7.5792 -3.4720 13 6 4.6605 8.7954 -2.5303 14 6 3.8461 8.2247 -1.3502 15 1 4.4982 7.9555 -0.5192 16 6 2.7551 9.2268 -0.9376 17 7 1.5281 8.8173 -1.6405 18 6 0.5225 9.6378 -2.0772 19 1 -0.3345 9.2190 -2.5837 20 6 0.6047 11.0077 -1.8690 21 7 1.6490 11.5180 -1.2513 22 14 -0.7674 12.1269 -2.4641 23 1 -1.8202 11.3123 -3.1224 24 1 -1.3522 12.8512 -1.3072 25 1 -0.2201 13.1069 -3.4364 26 6 1.5889 7.3405 -1.8015 27 6 2.7693 3.4754 0.7379 28 6 2.2717 2.0960 1.1098 29 8 2.1235 1.6936 2.2443 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.8311 1.5538 -1.9387 36 1 1.3622 2.5296 -1.6431 37 1 4.0374 5.8084 -0.4244 38 1 3.5561 5.8350 -3.6875 39 1 2.7460 7.3973 -4.0195 40 1 5.6443 6.9236 -3.1021 41 1 5.0695 7.9052 -4.4900 42 1 5.6239 9.1698 -2.1845 43 1 4.1037 9.5846 -3.0356 44 1 2.5994 9.1875 0.1405 45 1 3.0404 10.2351 -1.2377 46 1 1.7066 12.4753 -1.1061 47 1 1.0693 7.0262 -2.7065 48 1 1.1516 6.8533 -0.9300 49 1 1.9742 4.2119 0.8538 50 1 3.6314 3.7470 1.3472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098862488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:41 Heat of formation + Delta-G solvation = -64.834880 kcal Electronic energy + Delta-G solvation = -30505.759685 eV Core-core repulsion = 26532.327594 eV Total energy + Delta-G solvation = -3973.432091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02923 -41.14122 -39.47628 -37.39820 -36.17609 -35.07920 -34.47110 -33.34119 -31.17753 -30.65920 -29.32976 -28.67989 -26.38428 -26.27350 -24.90515 -23.81908 -22.40555 -22.07877 -20.64232 -20.38605 -20.16625 -19.05941 -18.40306 -17.75447 -17.18496 -16.86958 -16.70451 -16.39005 -15.96874 -15.65764 -15.40106 -15.10451 -14.96061 -14.85177 -14.70215 -14.56477 -14.48339 -14.40614 -13.88814 -13.58922 -13.24720 -13.08237 -12.95017 -12.83845 -12.76322 -12.48410 -12.38076 -12.14148 -12.05973 -12.03110 -12.00462 -11.79888 -11.69708 -11.62936 -11.54834 -11.38510 -11.08305 -10.75292 -10.62137 -10.00537 -9.78661 -8.90148 -7.75439 -5.22672 1.45620 1.45950 1.46047 1.56442 1.63478 1.86950 2.21939 2.48987 3.17683 3.30905 3.33315 3.49130 3.68645 3.77783 3.88574 3.89903 3.93542 4.10170 4.21013 4.23768 4.43788 4.45281 4.45636 4.54329 4.54759 4.62112 4.65684 4.74405 4.76138 4.79701 4.83071 4.91579 4.93879 4.96313 5.01954 5.08770 5.15036 5.23266 5.27144 5.31955 5.43631 5.49852 5.54291 5.64722 5.75361 5.85604 6.02943 6.39426 6.64707 7.05869 7.11424 7.32648 7.75434 8.41818 9.22802 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.003037 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.733589 B = 9218.605511 C = 9994.549901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.615 5.615 4 C 0.118 3.882 5 C -0.105 4.105 6 H 0.160 0.840 7 C 0.524 3.476 8 O -0.565 6.565 9 N -0.696 5.696 10 C 0.173 3.827 11 C -0.107 4.107 12 C -0.109 4.109 13 C -0.107 4.107 14 C -0.101 4.101 15 H 0.107 0.893 16 C 0.143 3.857 17 N -0.616 5.616 18 C -0.235 4.235 19 H 0.071 0.929 20 C -0.060 4.060 21 N -0.941 5.941 22 Si 0.976 3.024 23 H -0.273 1.273 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.141 3.859 27 C -0.142 4.142 28 C 0.512 3.488 29 O -0.577 6.577 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.416 0.584 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.038 0.962 44 H -0.020 1.020 45 H 0.101 0.899 46 H 0.249 0.751 47 H 0.032 0.968 48 H 0.003 0.997 49 H 0.096 0.904 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 -20.463 -1.023 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.348 5.348 4 C -0.005 4.005 5 C -0.126 4.126 6 H 0.177 0.823 7 C 0.310 3.690 8 O -0.444 6.444 9 N -0.348 5.348 10 C 0.085 3.915 11 C -0.146 4.146 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.121 4.121 15 H 0.125 0.875 16 C 0.017 3.983 17 N -0.341 5.341 18 C -0.364 4.364 19 H 0.089 0.911 20 C -0.253 4.253 21 N -0.591 5.591 22 Si 0.805 3.195 23 H -0.198 1.198 24 H -0.218 1.218 25 H -0.214 1.214 26 C 0.014 3.986 27 C -0.183 4.183 28 C 0.301 3.699 29 O -0.458 6.458 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.129 0.871 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.056 0.944 44 H -0.003 1.003 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.021 0.979 49 H 0.115 0.885 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.703 -20.578 -1.120 22.778 hybrid contribution -1.253 1.060 0.328 1.674 sum 8.450 -19.518 -0.793 21.283 Atomic orbital electron populations 1.22146 0.95937 1.03287 1.01281 1.21553 0.94343 0.80196 1.04330 1.48524 1.64729 1.14485 1.07081 1.22102 1.00175 0.91533 0.86686 1.22274 1.04679 0.92055 0.93598 0.82295 1.20536 0.79767 0.84986 0.83685 1.90736 1.35730 1.86448 1.31445 1.45857 1.46821 1.06249 1.35825 1.21427 0.93630 0.83996 0.92452 1.22540 0.97549 1.00696 0.93824 1.22549 0.96116 0.96363 0.99619 1.22363 0.99295 0.97515 0.95334 1.22912 0.96594 0.93614 0.99003 0.87535 1.21829 0.84487 1.00123 0.91824 1.45049 1.21060 1.01266 1.66697 1.19407 0.98075 0.88725 1.30243 0.91070 1.25500 1.00615 0.97679 1.01499 1.69836 1.30119 1.11060 1.48121 0.85041 0.78544 0.78684 0.77251 1.19796 1.21823 1.21404 1.21859 0.95318 0.84545 0.96885 1.22368 1.04985 0.94889 0.96024 1.21181 0.76412 0.88152 0.84149 1.90705 1.56034 1.76179 1.22840 0.92381 0.89326 0.94856 0.87068 0.90612 0.86781 0.91125 0.74651 0.90837 0.93903 0.88976 0.91219 0.89771 0.94357 1.00256 0.88168 0.94123 0.94966 0.97901 0.88546 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 71.98 0.74 -1.86 16 2 C 0.12 1.67 6.65 86.38 0.57 2.25 16 3 N -0.62 -10.97 2.93 -817.29 -2.40 -13.36 16 4 C 0.12 1.79 6.67 86.95 0.58 2.37 16 5 C -0.10 -1.47 3.56 -10.36 -0.04 -1.50 16 6 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 7 C 0.52 11.92 6.36 87.66 0.56 12.48 16 8 O -0.57 -17.75 13.51 -3.02 -0.04 -17.79 16 9 N -0.70 -15.94 5.14 -416.83 -2.14 -18.09 16 10 C 0.17 5.61 0.93 4.96 0.00 5.62 16 11 C -0.11 -3.38 5.50 31.74 0.17 -3.20 16 12 C -0.11 -2.76 6.92 32.00 0.22 -2.54 16 13 C -0.11 -3.32 6.25 31.75 0.20 -3.12 16 14 C -0.10 -3.38 3.63 -9.44 -0.03 -3.41 16 15 H 0.11 2.78 7.71 -2.39 -0.02 2.76 16 16 C 0.14 6.76 5.62 86.51 0.49 7.24 16 17 N -0.62 -32.11 3.42 -691.57 -2.37 -34.48 16 18 C -0.24 -13.51 10.33 84.03 0.87 -12.64 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 21 N -0.94 -54.89 10.08 21.65 0.22 -54.67 16 22 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 C 0.14 6.18 5.36 86.22 0.46 6.65 16 27 C -0.14 -2.38 6.36 30.59 0.19 -2.19 16 28 C 0.51 11.67 8.02 87.90 0.71 12.37 16 29 O -0.58 -18.07 17.59 -3.05 -0.05 -18.12 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.21 7.93 -2.39 -0.02 1.19 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.44 7.08 -2.39 -0.02 1.43 16 37 H 0.42 6.57 8.29 -92.70 -0.77 5.80 16 38 H 0.07 2.17 6.65 -2.39 -0.02 2.16 16 39 H 0.04 1.64 7.56 -2.39 -0.02 1.62 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.04 1.51 7.62 -2.38 -0.02 1.49 16 44 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H 0.10 5.39 4.93 -2.39 -0.01 5.38 16 46 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 47 H 0.03 1.52 7.52 -2.39 -0.02 1.51 16 48 H 0.00 0.15 8.05 -2.39 -0.02 0.13 16 49 H 0.10 1.97 7.89 -2.39 -0.02 1.95 16 50 H 0.14 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -77.55 388.37 1.57 -75.98 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.17 Total: 16.87 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 6.16 Total: 15.55 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -6.69 Total: -120.60 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.09 Total: -35.91 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.55 1.57 -75.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098862488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.143 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds