Wall clock time and date at job start Tue Mar 31 2020 19:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46898 * 2 1 4 4 N 1.46497 * 109.47360 * 239.99939 * 2 1 3 5 5 C 1.34782 * 119.99885 * 84.99933 * 4 2 1 6 6 O 1.21284 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.50694 * 119.99761 * 180.02562 * 5 4 2 8 8 C 1.53787 * 113.61680 * 279.13678 * 7 5 4 9 9 C 1.53956 * 87.02077 * 220.05274 * 8 7 5 10 10 C 1.53780 * 87.11265 * 25.36129 * 9 8 7 11 11 C 1.50704 * 109.46809 * 119.99890 * 2 1 3 12 12 O 1.21277 * 119.99522 * 120.00033 * 11 2 1 13 13 N 1.34771 * 119.99910 * 299.99895 * 11 2 1 14 14 C 1.46508 * 119.99604 * 180.02562 * 13 11 2 15 15 H 1.08995 * 110.55778 * 36.86426 * 14 13 11 16 16 C 1.54855 * 110.62501 * 159.94257 * 14 13 11 17 17 C 1.55846 * 103.44643 * 118.48806 * 16 14 13 18 18 H 1.08997 * 116.12451 * 159.14396 * 17 16 14 19 19 C 1.55841 * 105.06453 * 288.17592 * 17 16 14 20 20 C 1.54846 * 103.44735 * 71.82217 * 19 17 16 21 21 C 1.55846 * 110.62516 * 273.96709 * 14 13 11 22 22 H 1.09001 * 115.56408 * 82.69598 * 21 14 13 23 23 N 1.50241 * 101.05044 * 32.93739 * 17 16 14 24 24 C 1.36931 * 130.84218 * 126.05184 * 23 17 16 25 25 H 1.07995 * 120.00406 * 179.97438 * 24 23 17 26 26 C 1.38822 * 119.99589 * 359.97438 * 24 23 17 27 27 N 1.31618 * 119.99934 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 119.99689 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.47255 * 59.99596 * 28 26 24 30 30 H 1.48501 * 109.46742 * 180.02562 * 28 26 24 31 31 H 1.48498 * 109.46525 * 299.99369 * 28 26 24 32 32 H 1.09004 * 109.47412 * 300.00182 * 1 2 3 33 33 H 1.09005 * 109.46982 * 59.99971 * 1 2 3 34 34 H 1.08999 * 109.47519 * 179.97438 * 1 2 3 35 35 H 0.97002 * 120.00262 * 265.00020 * 4 2 1 36 36 H 1.09000 * 112.85524 * 50.33616 * 7 5 4 37 37 H 1.08997 * 113.60976 * 334.57214 * 8 7 5 38 38 H 1.09002 * 113.61083 * 105.47348 * 8 7 5 39 39 H 1.09003 * 113.53239 * 270.81018 * 9 8 7 40 40 H 1.08990 * 113.74661 * 139.94624 * 9 8 7 41 41 H 1.09006 * 113.61369 * 220.09425 * 10 9 8 42 42 H 1.08997 * 113.68773 * 89.20057 * 10 9 8 43 43 H 0.96998 * 120.00697 * 0.02562 * 13 11 2 44 44 H 1.08996 * 110.62219 * 236.97809 * 16 14 13 45 45 H 1.09000 * 110.62359 * 359.97438 * 16 14 13 46 46 H 1.09000 * 110.62914 * 190.31439 * 19 17 16 47 47 H 1.09007 * 110.62741 * 313.17488 * 19 17 16 48 48 H 1.09005 * 110.62988 * 241.50831 * 20 19 17 49 49 H 1.09002 * 110.62791 * 118.49072 * 20 19 17 50 50 H 0.96998 * 119.99335 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7288 -3.5876 8 6 4.1792 -0.8735 -3.6344 9 6 4.0828 -0.5568 -5.1380 10 6 2.7740 0.1847 -4.8185 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1192 13 7 1.7066 -0.2499 2.4545 14 6 2.1954 -0.9403 3.6508 15 1 3.2079 -1.3112 3.4918 16 6 2.1412 -0.0028 4.8821 17 6 1.1587 -0.7304 5.8486 18 1 1.2286 -0.4549 6.9009 19 6 -0.2482 -0.5593 5.2005 20 6 -0.1939 -1.4967 3.9693 21 6 1.2384 -2.1067 4.0410 22 1 1.3900 -3.0406 3.4997 23 7 1.4508 -2.1687 5.5270 24 6 1.8021 -3.2142 6.3385 25 1 1.9732 -4.1928 5.9149 26 6 1.9383 -3.0162 7.7058 27 7 1.7303 -1.8235 8.2219 28 14 2.4183 -4.4424 8.8127 29 1 3.7409 -4.9713 8.3932 30 1 2.4958 -3.9728 10.2194 31 1 1.3988 -5.5168 8.7056 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 2.2491 -1.6318 -1.1526 36 1 2.1161 -1.6587 -3.7864 37 1 4.7075 -0.1120 -3.0608 38 1 4.5289 -1.8838 -3.4217 39 1 3.9433 -1.4403 -5.7608 40 1 4.8769 0.0957 -5.5008 41 1 1.9908 0.0275 -5.5602 42 1 2.9160 1.2362 -4.5692 43 1 1.1487 0.5385 2.5436 44 1 3.1274 0.0917 5.3364 45 1 1.7510 0.9759 4.6026 46 1 -1.0300 -0.8765 5.8906 47 1 -0.4059 0.4744 4.8925 48 1 -0.3237 -0.9286 3.0480 49 1 -0.9488 -2.2790 4.0487 50 1 1.8252 -1.6853 9.1773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110205582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:50 Heat of formation + Delta-G solvation = -8.921663 kcal Electronic energy + Delta-G solvation = -29832.290216 eV Core-core repulsion = 25861.282705 eV Total energy + Delta-G solvation = -3971.007512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76485 -40.00963 -38.65082 -37.56524 -35.01899 -34.11662 -32.42118 -31.07923 -29.28001 -29.02871 -27.57667 -26.98706 -25.93619 -24.70003 -23.90175 -21.60828 -21.12126 -20.37884 -19.76271 -19.47952 -18.67061 -18.14534 -17.11688 -16.54654 -16.35561 -15.88017 -15.44396 -15.24303 -14.86788 -14.64998 -14.38810 -14.28871 -13.96769 -13.56343 -13.24498 -12.81720 -12.77240 -12.60614 -12.38618 -12.25406 -12.24065 -11.81423 -11.76374 -11.52466 -11.50865 -11.08563 -10.95122 -10.93126 -10.87883 -10.85285 -10.73529 -10.25930 -10.14450 -9.92353 -9.91230 -9.75454 -9.44616 -9.34116 -9.21885 -8.96055 -8.58868 -6.95081 -5.75596 -3.13744 2.40569 2.67663 2.79607 3.38377 3.42333 3.43257 3.47417 4.16741 4.26350 4.39823 4.42553 4.47823 4.63931 4.82481 4.94856 4.98369 5.16303 5.22216 5.34616 5.35387 5.40184 5.46056 5.50145 5.56427 5.59700 5.62868 5.75232 5.76261 5.80236 5.92494 5.92973 6.02010 6.06757 6.08026 6.20541 6.25080 6.29359 6.49632 6.55757 6.61120 6.76459 6.91514 6.95026 7.22793 7.33625 7.48681 7.63943 7.77073 8.03825 8.13661 8.32178 9.07472 9.70132 10.50062 11.33942 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.002381 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.486120 B =11755.692816 C =12390.418845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.111 0.889 4 N -0.709 5.709 5 C 0.526 3.474 6 O -0.544 6.544 7 C -0.138 4.138 8 C -0.124 4.124 9 C -0.142 4.142 10 C -0.117 4.117 11 C 0.506 3.494 12 O -0.540 6.540 13 N -0.704 5.704 14 C 0.127 3.873 15 H 0.082 0.918 16 C -0.141 4.141 17 C 0.154 3.846 18 H 0.155 0.845 19 C -0.138 4.138 20 C -0.130 4.130 21 C 0.129 3.871 22 H 0.085 0.915 23 N -0.589 5.589 24 C -0.211 4.211 25 H 0.078 0.922 26 C -0.012 4.012 27 N -0.924 5.924 28 Si 0.917 3.083 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.397 0.603 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.050 0.950 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 5.493 -21.498 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.014 3.986 3 H 0.128 0.872 4 N -0.363 5.363 5 C 0.313 3.687 6 O -0.421 6.421 7 C -0.159 4.159 8 C -0.162 4.162 9 C -0.180 4.180 10 C -0.155 4.155 11 C 0.291 3.709 12 O -0.417 6.417 13 N -0.355 5.355 14 C 0.021 3.979 15 H 0.100 0.900 16 C -0.181 4.181 17 C 0.047 3.953 18 H 0.172 0.828 19 C -0.177 4.177 20 C -0.170 4.170 21 C 0.020 3.980 22 H 0.103 0.897 23 N -0.310 5.310 24 C -0.339 4.339 25 H 0.096 0.904 26 C -0.207 4.207 27 N -0.572 5.572 28 Si 0.748 3.252 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.213 1.213 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.248 0.752 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.232 0.768 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.356 5.462 -21.256 21.950 hybrid contribution -0.008 -0.848 0.683 1.089 sum -0.364 4.614 -20.574 21.088 Atomic orbital electron populations 1.22122 0.92849 1.03272 1.03444 1.20789 0.95685 0.98040 0.84085 0.87167 1.45811 1.67015 1.14948 1.08483 1.20548 0.76736 0.87168 0.84282 1.90681 1.50202 1.16060 1.85144 1.22802 0.98454 1.00935 0.93744 1.22864 0.93153 1.02907 0.97273 1.22865 0.98253 1.00747 0.96125 1.22803 0.97660 0.99739 0.95275 1.20457 0.80640 0.84955 0.84872 1.90694 1.38175 1.26292 1.86537 1.46198 1.52363 1.31354 1.05576 1.22703 0.98756 0.94074 0.82320 0.89956 1.23291 1.02209 0.96473 0.96080 1.23770 0.88571 0.83029 0.99902 0.82829 1.23058 1.01062 0.96556 0.97037 1.22910 0.98326 0.98681 0.97047 1.23184 0.92785 0.94973 0.87080 0.89701 1.46472 1.78621 1.06185 0.99698 1.19009 1.38545 0.88342 0.88041 0.90370 1.24704 1.02491 0.97077 0.96442 1.69421 1.55938 1.20270 1.11538 0.86099 0.78354 0.81111 0.79639 1.21200 1.21567 1.21253 0.90825 0.91028 0.91605 0.75239 0.86823 0.89626 0.90418 0.89871 0.90947 0.91027 0.88708 0.76835 0.91535 0.92644 0.92653 0.93613 0.93056 0.93074 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.38 37.16 0.35 -1.19 16 2 C 0.12 1.39 2.98 -69.08 -0.21 1.18 16 3 H 0.11 1.27 7.58 -51.93 -0.39 0.87 16 4 N -0.71 -7.75 4.95 -54.93 -0.27 -8.02 16 5 C 0.53 5.87 7.32 -10.99 -0.08 5.79 16 6 O -0.54 -7.72 15.57 5.55 0.09 -7.64 16 7 C -0.14 -1.12 4.14 -90.96 -0.38 -1.50 16 8 C -0.12 -0.92 7.64 -25.82 -0.20 -1.12 16 9 C -0.14 -0.90 8.09 -25.83 -0.21 -1.10 16 10 C -0.12 -0.91 7.40 -25.92 -0.19 -1.10 16 11 C 0.51 7.11 7.22 -10.99 -0.08 7.03 16 12 O -0.54 -9.42 15.56 5.56 0.09 -9.33 16 13 N -0.70 -9.71 3.53 -51.39 -0.18 -9.89 16 14 C 0.13 2.27 3.08 -65.43 -0.20 2.07 16 15 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 16 C -0.14 -2.58 6.20 -24.23 -0.15 -2.73 16 17 C 0.15 3.37 4.72 -62.80 -0.30 3.07 16 18 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 19 C -0.14 -2.56 6.44 -24.24 -0.16 -2.72 16 20 C -0.13 -2.29 6.32 -24.24 -0.15 -2.45 16 21 C 0.13 2.61 5.35 -62.80 -0.34 2.27 16 22 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 23 N -0.59 -14.34 2.99 -145.81 -0.44 -14.78 16 24 C -0.21 -5.74 10.59 -15.06 -0.16 -5.90 16 25 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 26 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 27 N -0.92 -25.84 10.47 55.49 0.58 -25.26 16 28 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 31 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 32 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.41 4.31 7.79 -40.82 -0.32 3.99 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.89 7.45 -51.93 -0.39 0.50 16 43 H 0.40 4.48 7.43 -40.82 -0.30 4.18 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 0.71 7.82 -51.92 -0.41 0.31 16 48 H 0.05 0.75 6.48 -51.93 -0.34 0.42 16 49 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -31.37 392.78 -10.00 -41.37 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.22 Total: 9.65 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.54 Total: 1.20 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.31 Total: -57.95 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.17 Total: -16.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.37 -10.00 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110205582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.452 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds