Wall clock time and date at job start Tue Mar 31 2020 19:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46898 * 2 1 4 4 N 1.46497 * 109.47360 * 239.99939 * 2 1 3 5 5 C 1.34782 * 119.99885 * 84.99933 * 4 2 1 6 6 O 1.21284 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.50694 * 119.99761 * 180.02562 * 5 4 2 8 8 C 1.53787 * 113.61680 * 279.13678 * 7 5 4 9 9 C 1.53956 * 87.02077 * 220.05274 * 8 7 5 10 10 C 1.53780 * 87.11265 * 25.36129 * 9 8 7 11 11 C 1.50704 * 109.46809 * 119.99890 * 2 1 3 12 12 O 1.21277 * 119.99522 * 120.00033 * 11 2 1 13 13 N 1.34771 * 119.99910 * 299.99895 * 11 2 1 14 14 C 1.46508 * 119.99604 * 180.02562 * 13 11 2 15 15 H 1.08995 * 110.55778 * 36.86426 * 14 13 11 16 16 C 1.54855 * 110.62501 * 159.94257 * 14 13 11 17 17 C 1.55846 * 103.44643 * 118.48806 * 16 14 13 18 18 H 1.08997 * 116.12451 * 159.14396 * 17 16 14 19 19 C 1.55841 * 105.06453 * 288.17592 * 17 16 14 20 20 C 1.54846 * 103.44735 * 71.82217 * 19 17 16 21 21 C 1.55846 * 110.62516 * 273.96709 * 14 13 11 22 22 H 1.09001 * 115.56408 * 82.69598 * 21 14 13 23 23 N 1.50241 * 101.05044 * 32.93739 * 17 16 14 24 24 C 1.36931 * 130.84218 * 126.05184 * 23 17 16 25 25 H 1.07995 * 120.00406 * 179.97438 * 24 23 17 26 26 C 1.38822 * 119.99589 * 359.97438 * 24 23 17 27 27 N 1.31618 * 119.99934 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 119.99689 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.47255 * 59.99596 * 28 26 24 30 30 H 1.48501 * 109.46742 * 180.02562 * 28 26 24 31 31 H 1.48498 * 109.46525 * 299.99369 * 28 26 24 32 32 H 1.09004 * 109.47412 * 300.00182 * 1 2 3 33 33 H 1.09005 * 109.46982 * 59.99971 * 1 2 3 34 34 H 1.08999 * 109.47519 * 179.97438 * 1 2 3 35 35 H 0.97002 * 120.00262 * 265.00020 * 4 2 1 36 36 H 1.09000 * 112.85524 * 50.33616 * 7 5 4 37 37 H 1.08997 * 113.60976 * 334.57214 * 8 7 5 38 38 H 1.09002 * 113.61083 * 105.47348 * 8 7 5 39 39 H 1.09003 * 113.53239 * 270.81018 * 9 8 7 40 40 H 1.08990 * 113.74661 * 139.94624 * 9 8 7 41 41 H 1.09006 * 113.61369 * 220.09425 * 10 9 8 42 42 H 1.08997 * 113.68773 * 89.20057 * 10 9 8 43 43 H 0.96998 * 120.00697 * 0.02562 * 13 11 2 44 44 H 1.08996 * 110.62219 * 236.97809 * 16 14 13 45 45 H 1.09000 * 110.62359 * 359.97438 * 16 14 13 46 46 H 1.09000 * 110.62914 * 190.31439 * 19 17 16 47 47 H 1.09007 * 110.62741 * 313.17488 * 19 17 16 48 48 H 1.09005 * 110.62988 * 241.50831 * 20 19 17 49 49 H 1.09002 * 110.62791 * 118.49072 * 20 19 17 50 50 H 0.96998 * 119.99335 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7288 -3.5876 8 6 4.1792 -0.8735 -3.6344 9 6 4.0828 -0.5568 -5.1380 10 6 2.7740 0.1847 -4.8185 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1192 13 7 1.7066 -0.2499 2.4545 14 6 2.1954 -0.9403 3.6508 15 1 3.2079 -1.3112 3.4918 16 6 2.1412 -0.0028 4.8821 17 6 1.1587 -0.7304 5.8486 18 1 1.2286 -0.4549 6.9009 19 6 -0.2482 -0.5593 5.2005 20 6 -0.1939 -1.4967 3.9693 21 6 1.2384 -2.1067 4.0410 22 1 1.3900 -3.0406 3.4997 23 7 1.4508 -2.1687 5.5270 24 6 1.8021 -3.2142 6.3385 25 1 1.9732 -4.1928 5.9149 26 6 1.9383 -3.0162 7.7058 27 7 1.7303 -1.8235 8.2219 28 14 2.4183 -4.4424 8.8127 29 1 3.7409 -4.9713 8.3932 30 1 2.4958 -3.9728 10.2194 31 1 1.3988 -5.5168 8.7056 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 2.2491 -1.6318 -1.1526 36 1 2.1161 -1.6587 -3.7864 37 1 4.7075 -0.1120 -3.0608 38 1 4.5289 -1.8838 -3.4217 39 1 3.9433 -1.4403 -5.7608 40 1 4.8769 0.0957 -5.5008 41 1 1.9908 0.0275 -5.5602 42 1 2.9160 1.2362 -4.5692 43 1 1.1487 0.5385 2.5436 44 1 3.1274 0.0917 5.3364 45 1 1.7510 0.9759 4.6026 46 1 -1.0300 -0.8765 5.8906 47 1 -0.4059 0.4744 4.8925 48 1 -0.3237 -0.9286 3.0480 49 1 -0.9488 -2.2790 4.0487 50 1 1.8252 -1.6853 9.1773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110205582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:49 Heat of formation + Delta-G solvation = -28.592210 kcal Electronic energy + Delta-G solvation = -29833.143195 eV Core-core repulsion = 25861.282705 eV Total energy + Delta-G solvation = -3971.860491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81918 -41.15567 -39.94030 -38.36829 -35.99521 -35.55938 -34.25951 -32.05878 -30.99581 -30.59005 -29.10743 -27.65627 -26.52205 -26.28619 -25.16275 -22.93984 -22.20916 -21.56470 -21.09425 -20.39567 -20.16334 -19.15931 -18.77329 -17.63522 -17.45447 -16.81357 -16.72268 -16.44275 -16.38282 -15.91723 -15.67027 -15.51574 -15.21690 -14.68598 -14.16037 -13.99650 -13.86916 -13.60373 -13.52740 -13.39660 -13.30874 -13.20999 -12.89840 -12.86784 -12.78906 -12.65766 -12.57973 -12.37163 -12.14178 -12.02150 -11.88985 -11.55632 -11.43167 -11.29719 -11.19990 -11.05403 -10.89585 -10.78737 -10.72071 -10.21189 -10.01940 -8.85978 -7.79566 -5.18694 1.46119 1.47869 1.50443 1.54217 1.57903 1.82597 2.39083 2.51635 3.33470 3.45656 3.54162 3.61532 3.67189 3.80597 3.92873 3.95821 4.01476 4.08493 4.13404 4.16635 4.24641 4.42404 4.47003 4.60815 4.66994 4.70457 4.72198 4.79914 4.80210 4.81638 4.87388 4.97780 5.04421 5.07329 5.10194 5.15738 5.18920 5.19562 5.21936 5.31995 5.33696 5.47343 5.53229 5.54195 5.74320 5.89614 6.27962 6.47673 6.53085 7.05367 7.16852 7.19893 7.69526 8.55247 9.26994 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.002381 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.486120 B =11755.692816 C =12390.418845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 H 0.113 0.887 4 N -0.709 5.709 5 C 0.524 3.476 6 O -0.577 6.577 7 C -0.137 4.137 8 C -0.126 4.126 9 C -0.131 4.131 10 C -0.121 4.121 11 C 0.510 3.490 12 O -0.574 6.574 13 N -0.691 5.691 14 C 0.147 3.853 15 H 0.054 0.946 16 C -0.127 4.127 17 C 0.137 3.863 18 H 0.119 0.881 19 C -0.127 4.127 20 C -0.115 4.115 21 C 0.120 3.880 22 H 0.068 0.932 23 N -0.618 5.618 24 C -0.225 4.225 25 H 0.071 0.929 26 C -0.064 4.064 27 N -0.944 5.944 28 Si 0.975 3.025 29 H -0.283 1.283 30 H -0.292 1.292 31 H -0.282 1.282 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.413 0.587 36 H 0.137 0.863 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.415 0.585 44 H 0.045 0.955 45 H 0.097 0.903 46 H 0.033 0.967 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 6.092 -23.665 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 H 0.131 0.869 4 N -0.361 5.361 5 C 0.312 3.688 6 O -0.456 6.456 7 C -0.158 4.158 8 C -0.164 4.164 9 C -0.169 4.169 10 C -0.159 4.159 11 C 0.296 3.704 12 O -0.454 6.454 13 N -0.343 5.343 14 C 0.040 3.960 15 H 0.072 0.928 16 C -0.166 4.166 17 C 0.031 3.969 18 H 0.137 0.863 19 C -0.166 4.166 20 C -0.154 4.154 21 C 0.012 3.988 22 H 0.086 0.914 23 N -0.340 5.340 24 C -0.354 4.354 25 H 0.089 0.911 26 C -0.257 4.257 27 N -0.593 5.593 28 Si 0.804 3.196 29 H -0.210 1.210 30 H -0.218 1.218 31 H -0.208 1.208 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.251 0.749 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.253 0.747 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.052 0.948 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.060 0.940 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.247 6.085 -23.463 24.271 hybrid contribution 0.291 -1.040 1.304 1.693 sum -0.956 5.045 -22.158 22.745 Atomic orbital electron populations 1.22113 0.91035 1.03556 1.04439 1.20768 0.96898 0.97505 0.82710 0.86903 1.45880 1.66801 1.15054 1.08409 1.21080 0.75912 0.86839 0.84927 1.90664 1.51760 1.17533 1.85689 1.22952 0.98961 1.01611 0.92303 1.22874 0.92429 1.03022 0.98096 1.22856 0.97373 1.01192 0.95446 1.22796 0.98989 0.98641 0.95442 1.20920 0.79667 0.84333 0.85435 1.90692 1.39628 1.28011 1.87029 1.45912 1.52521 1.31595 1.04310 1.22114 0.96782 0.93401 0.83660 0.92790 1.23124 1.00425 0.98072 0.95027 1.23686 0.91579 0.82317 0.99289 0.86331 1.22955 0.97985 0.99098 0.96564 1.22815 0.95843 0.98478 0.98313 1.23327 0.95133 0.95411 0.84921 0.91352 1.46731 1.79159 1.06685 1.01434 1.19256 1.38025 0.89181 0.88911 0.91073 1.25411 1.03376 0.99274 0.97600 1.69660 1.57008 1.21499 1.11139 0.85196 0.77982 0.78673 0.77739 1.20981 1.21751 1.20818 0.88848 0.91067 0.91626 0.74925 0.84543 0.91212 0.89363 0.88015 0.90632 0.89908 0.90800 0.74670 0.93579 0.88476 0.94767 0.89393 0.89169 0.93981 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.38 71.98 0.68 -1.79 16 2 C 0.13 2.64 2.98 44.25 0.13 2.77 16 3 H 0.11 2.32 7.58 -2.38 -0.02 2.30 16 4 N -0.71 -14.33 4.95 -446.09 -2.21 -16.54 16 5 C 0.52 11.01 7.32 87.65 0.64 11.65 16 6 O -0.58 -15.84 15.57 -3.04 -0.05 -15.89 16 7 C -0.14 -1.99 4.14 -11.01 -0.05 -2.04 16 8 C -0.13 -1.68 7.64 31.18 0.24 -1.44 16 9 C -0.13 -1.37 8.09 31.18 0.25 -1.12 16 10 C -0.12 -1.69 7.40 31.12 0.23 -1.46 16 11 C 0.51 13.29 7.22 87.66 0.63 13.93 16 12 O -0.57 -19.54 15.56 -3.02 -0.05 -19.59 16 13 N -0.69 -17.12 3.53 -434.90 -1.53 -18.66 16 14 C 0.15 5.11 3.08 46.61 0.14 5.26 16 15 H 0.05 2.21 7.70 -2.39 -0.02 2.19 16 16 C -0.13 -4.48 6.20 32.21 0.20 -4.28 16 17 C 0.14 5.99 4.72 46.23 0.22 6.21 16 18 H 0.12 6.13 5.52 -2.39 -0.01 6.12 16 19 C -0.13 -4.45 6.44 32.21 0.21 -4.24 16 20 C -0.12 -3.79 6.32 32.21 0.20 -3.59 16 21 C 0.12 4.81 5.35 46.23 0.25 5.06 16 22 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 23 N -0.62 -30.62 2.99 -615.22 -1.84 -32.46 16 24 C -0.22 -12.56 10.59 84.04 0.89 -11.67 16 25 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 26 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 27 N -0.94 -54.37 10.47 21.65 0.23 -54.14 16 28 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 29 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 30 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 31 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 32 H 0.09 1.13 7.56 -2.38 -0.02 1.11 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 8.07 7.79 -92.71 -0.72 7.34 16 36 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 42 H 0.07 1.36 7.45 -2.39 -0.02 1.34 16 43 H 0.42 7.46 7.43 -92.71 -0.69 6.77 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 2.59 7.34 -2.39 -0.02 2.57 16 46 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.09 2.34 7.82 -2.38 -0.02 2.32 16 48 H 0.09 2.25 6.48 -2.38 -0.02 2.23 16 49 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -71.31 392.78 1.46 -69.86 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.45 Total: 29.43 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.33 Total: 10.13 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -5.35 Total: -121.80 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.09 Total: -35.48 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.31 1.46 -69.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110205582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds