Wall clock time and date at job start Tue Mar 31 2020 19:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46548 * 2 1 4 4 N 1.46502 * 109.46983 * 240.01134 * 2 1 3 5 5 C 1.34768 * 120.00739 * 84.99790 * 4 2 1 6 6 O 1.21288 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00434 * 179.97438 * 5 4 2 8 8 C 1.53786 * 113.61519 * 80.85965 * 7 5 4 9 9 C 1.53962 * 87.01719 * 89.23113 * 8 7 5 10 10 C 1.53781 * 113.61630 * 178.46913 * 7 5 4 11 11 C 1.50693 * 109.47520 * 120.00464 * 2 1 3 12 12 O 1.21276 * 120.00268 * 120.00258 * 11 2 1 13 13 N 1.34780 * 120.00045 * 300.00325 * 11 2 1 14 14 C 1.46495 * 120.00192 * 179.97438 * 13 11 2 15 15 H 1.08995 * 110.56095 * 34.29811 * 14 13 11 16 16 C 1.54853 * 110.62594 * 271.39867 * 14 13 11 17 17 C 1.55842 * 103.44551 * 241.50946 * 16 14 13 18 18 H 1.09004 * 115.56300 * 158.81830 * 17 16 14 19 19 C 1.55846 * 105.06549 * 287.42407 * 17 16 14 20 20 C 1.54855 * 103.44599 * 71.82333 * 19 17 16 21 21 C 1.55844 * 110.62848 * 157.20171 * 14 13 11 22 22 H 1.09001 * 115.55938 * 318.92497 * 21 14 13 23 23 N 1.50236 * 101.05120 * 32.93949 * 17 16 14 24 24 C 1.36939 * 130.84136 * 126.01419 * 23 17 16 25 25 H 1.07992 * 119.99928 * 180.02562 * 24 23 17 26 26 C 1.38814 * 119.99743 * 0.02562 * 24 23 17 27 27 N 1.31618 * 120.00135 * 0.02562 * 26 24 23 28 28 Si 1.86798 * 119.99972 * 179.97438 * 26 24 23 29 29 H 1.48495 * 109.47041 * 359.97438 * 28 26 24 30 30 H 1.48500 * 109.47179 * 119.99965 * 28 26 24 31 31 H 1.48497 * 109.47280 * 239.99851 * 28 26 24 32 32 H 1.09002 * 109.47188 * 299.99410 * 1 2 3 33 33 H 1.08999 * 109.47689 * 59.99727 * 1 2 3 34 34 H 1.09006 * 109.46499 * 179.97438 * 1 2 3 35 35 H 0.97004 * 119.99261 * 264.98864 * 4 2 1 36 36 H 1.09002 * 112.84782 * 309.66555 * 7 5 4 37 37 H 1.08993 * 113.61491 * 203.75234 * 8 7 5 38 38 H 1.09000 * 113.61138 * 334.65572 * 8 7 5 39 39 H 1.08997 * 113.53543 * 270.80998 * 9 8 7 40 40 H 1.08998 * 113.73879 * 139.94595 * 9 8 7 41 41 H 1.09001 * 113.61695 * 25.34764 * 10 7 5 42 42 H 1.08996 * 113.61580 * 156.17042 * 10 7 5 43 43 H 0.97006 * 119.99723 * 359.97438 * 13 11 2 44 44 H 1.09001 * 110.62780 * 0.02562 * 16 14 13 45 45 H 1.08998 * 110.62497 * 123.01860 * 16 14 13 46 46 H 1.09002 * 110.63149 * 190.31636 * 19 17 16 47 47 H 1.09007 * 110.62587 * 313.33412 * 19 17 16 48 48 H 1.09000 * 110.62456 * 118.48910 * 20 19 17 49 49 H 1.08996 * 110.62555 * 241.51481 * 20 19 17 50 50 H 0.97004 * 120.00332 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8581 1.1587 -2.4116 7 6 2.6499 -0.7281 -3.5876 8 6 1.5675 -1.5447 -4.3132 9 6 1.2556 -0.2679 -5.1151 10 6 2.7040 0.1672 -4.8367 11 6 2.0324 -0.7105 1.2303 12 8 2.7297 -1.6964 1.1190 13 7 1.7068 -0.2501 2.4545 14 6 2.1948 -0.9411 3.6506 15 1 3.1892 -1.3519 3.4764 16 6 1.2099 -2.0581 4.0752 17 6 0.7556 -1.6184 5.4996 18 1 -0.1863 -2.0444 5.8454 19 6 1.9884 -1.8798 6.4166 20 6 2.9882 -0.7731 5.9999 21 6 2.2055 0.0225 4.8753 22 1 2.5513 1.0363 4.6731 23 7 0.7874 -0.1226 5.3632 24 6 -0.1759 0.8196 5.6070 25 1 0.0390 1.8657 5.4465 26 6 -1.4287 0.4300 6.0606 27 7 -1.6904 -0.8449 6.2567 28 14 -2.7426 1.7152 6.3939 29 1 -2.2002 3.0657 6.0989 30 1 -3.9209 1.4545 5.5285 31 1 -3.1512 1.6471 7.8199 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3632 -1.0278 -0.0005 35 1 2.2491 -1.6316 -1.1528 36 1 3.5701 -1.2844 -3.4089 37 1 1.9670 -2.3558 -4.9218 38 1 0.7523 -1.8635 -3.6637 39 1 0.5093 0.3711 -4.6430 40 1 1.0497 -0.4513 -6.1696 41 1 2.8050 1.2285 -4.6093 42 1 3.4159 -0.1742 -5.5881 43 1 1.1494 0.5387 2.5436 44 1 0.3586 -2.0982 3.3956 45 1 1.7166 -3.0223 4.1143 46 1 1.7152 -1.7749 7.4666 47 1 2.4072 -2.8677 6.2247 48 1 3.2107 -0.1193 6.8432 49 1 3.9027 -1.2121 5.6013 50 1 -2.5660 -1.1173 6.5733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111513189.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:55 Heat of formation + Delta-G solvation = -12.880218 kcal Electronic energy + Delta-G solvation = -29970.398996 eV Core-core repulsion = 25999.219828 eV Total energy + Delta-G solvation = -3971.179168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.76748 -39.83395 -38.57820 -37.34656 -34.92775 -33.97314 -32.58890 -30.98042 -29.17550 -28.75912 -27.66732 -26.72656 -25.90017 -24.52549 -24.08144 -21.96190 -21.03728 -19.96574 -19.86940 -19.42886 -18.71693 -17.44287 -17.04016 -16.84306 -16.28577 -15.67808 -15.50650 -15.07827 -14.94243 -14.73096 -14.28030 -13.99707 -13.82167 -13.47464 -13.35736 -12.97609 -12.71844 -12.61667 -12.34200 -12.30065 -12.05344 -11.89034 -11.62368 -11.29096 -11.24095 -11.16560 -10.98199 -10.95114 -10.67894 -10.66279 -10.56922 -10.40172 -10.11574 -9.96221 -9.92588 -9.78962 -9.36854 -9.26191 -9.10784 -9.01787 -8.56056 -7.00363 -5.79626 -3.19074 2.45539 2.76498 2.85591 3.33012 3.38898 3.41304 3.59296 4.24575 4.32874 4.35976 4.46077 4.57283 4.78957 4.96102 5.05327 5.07012 5.13452 5.29660 5.33798 5.37336 5.49072 5.55696 5.61411 5.63153 5.65472 5.74701 5.77878 5.80124 5.84394 6.00487 6.03798 6.08922 6.10763 6.13068 6.23871 6.28711 6.36474 6.44256 6.54393 6.68142 6.77579 6.89167 7.03072 7.26775 7.40286 7.42360 7.73731 7.83799 8.10692 8.11685 8.43550 9.02070 9.65192 10.45796 11.29129 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.002830 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.513100 B = 9892.997959 C =11002.843878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.111 0.889 4 N -0.708 5.708 5 C 0.535 3.465 6 O -0.540 6.540 7 C -0.141 4.141 8 C -0.125 4.125 9 C -0.142 4.142 10 C -0.121 4.121 11 C 0.508 3.492 12 O -0.551 6.551 13 N -0.697 5.697 14 C 0.128 3.872 15 H 0.079 0.921 16 C -0.142 4.142 17 C 0.155 3.845 18 H 0.152 0.848 19 C -0.140 4.140 20 C -0.128 4.128 21 C 0.123 3.877 22 H 0.090 0.910 23 N -0.589 5.589 24 C -0.215 4.215 25 H 0.079 0.921 26 C -0.009 4.009 27 N -0.918 5.918 28 Si 0.914 3.086 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.405 0.595 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 -1.996 -16.253 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.129 0.871 4 N -0.361 5.361 5 C 0.321 3.679 6 O -0.417 6.417 7 C -0.162 4.162 8 C -0.163 4.163 9 C -0.179 4.179 10 C -0.159 4.159 11 C 0.293 3.707 12 O -0.430 6.430 13 N -0.346 5.346 14 C 0.022 3.978 15 H 0.097 0.903 16 C -0.182 4.182 17 C 0.048 3.952 18 H 0.169 0.831 19 C -0.179 4.179 20 C -0.168 4.168 21 C 0.015 3.985 22 H 0.108 0.892 23 N -0.309 5.309 24 C -0.343 4.343 25 H 0.097 0.903 26 C -0.205 4.205 27 N -0.566 5.566 28 Si 0.745 3.255 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.247 0.753 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.240 0.760 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.718 -1.729 -16.229 18.053 hybrid contribution -0.741 0.471 0.398 0.964 sum 6.977 -1.258 -15.830 17.345 Atomic orbital electron populations 1.22120 0.92599 1.03259 1.03738 1.20787 0.95862 0.97963 0.83808 0.87101 1.45728 1.67066 1.14867 1.08423 1.20070 0.77065 0.86911 0.83867 1.90690 1.50046 1.15945 1.84997 1.22412 1.00934 0.99619 0.93241 1.22868 0.97691 0.97091 0.98667 1.22919 0.97517 0.97132 1.00333 1.22751 0.97275 1.00776 0.95086 1.20435 0.80511 0.84813 0.84987 1.90649 1.38981 1.26633 1.86717 1.45973 1.51955 1.31696 1.04994 1.22674 0.96908 0.94320 0.83864 0.90302 1.23451 0.97879 0.95969 1.00903 1.23711 0.97702 0.83901 0.89891 0.83101 1.23049 0.97967 0.96164 1.00728 1.23302 0.96875 0.98010 0.98647 1.23732 0.87831 0.95528 0.91434 0.89175 1.46593 1.06696 1.02514 1.75139 1.19053 0.90188 0.87662 1.37421 0.90297 1.24703 0.97593 0.96246 1.01960 1.69473 1.21702 1.13452 1.51983 0.86003 0.81645 0.80221 0.77621 1.20557 1.21795 1.21818 0.90325 0.91146 0.91772 0.75324 0.88059 0.89032 0.90967 0.89755 0.91272 0.89950 0.89508 0.76004 0.92229 0.92840 0.92610 0.93271 0.92477 0.92976 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.38 37.16 0.35 -1.64 16 2 C 0.12 1.64 2.98 -69.08 -0.21 1.43 16 3 H 0.11 1.48 7.58 -51.93 -0.39 1.09 16 4 N -0.71 -8.57 4.95 -54.93 -0.27 -8.85 16 5 C 0.53 6.54 7.04 -10.99 -0.08 6.47 16 6 O -0.54 -8.27 15.49 5.55 0.09 -8.18 16 7 C -0.14 -1.26 4.34 -90.96 -0.39 -1.66 16 8 C -0.13 -0.95 7.68 -25.82 -0.20 -1.15 16 9 C -0.14 -1.17 7.76 -25.82 -0.20 -1.37 16 10 C -0.12 -1.03 7.46 -25.92 -0.19 -1.22 16 11 C 0.51 7.90 7.22 -10.99 -0.08 7.82 16 12 O -0.55 -9.88 15.52 5.56 0.09 -9.80 16 13 N -0.70 -11.24 4.98 -51.40 -0.26 -11.50 16 14 C 0.13 2.28 2.75 -65.44 -0.18 2.10 16 15 H 0.08 1.41 7.31 -51.93 -0.38 1.03 16 16 C -0.14 -2.77 6.22 -24.24 -0.15 -2.92 16 17 C 0.15 3.40 4.67 -62.80 -0.29 3.10 16 18 H 0.15 3.84 5.52 -51.93 -0.29 3.55 16 19 C -0.14 -2.68 6.45 -24.23 -0.16 -2.84 16 20 C -0.13 -2.25 6.53 -22.75 -0.15 -2.40 16 21 C 0.12 2.31 5.20 -61.07 -0.32 1.99 16 22 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 23 N -0.59 -13.41 3.01 -143.91 -0.43 -13.84 16 24 C -0.22 -5.45 10.59 -15.06 -0.16 -5.61 16 25 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 26 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 27 N -0.92 -25.11 10.46 55.49 0.58 -24.53 16 28 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 31 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 32 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.41 4.69 7.79 -40.82 -0.32 4.37 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.85 7.41 -51.93 -0.38 0.46 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.40 6.36 8.06 -40.82 -0.33 6.03 16 44 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 45 H 0.05 0.98 7.80 -51.93 -0.40 0.58 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.84 7.81 -51.92 -0.41 0.44 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 50 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -29.71 395.37 -10.09 -39.79 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -8.31 Total: 13.19 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.50 Total: 1.79 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.38 Total: -58.72 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.17 Total: -17.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.71 -10.09 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111513189.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.911 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds