Wall clock time and date at job start Tue Mar 31 2020 19:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46897 * 2 1 4 4 N 1.46505 * 109.47226 * 119.99187 * 2 1 3 5 5 C 1.34769 * 120.00155 * 275.00478 * 4 2 1 6 6 O 1.21279 * 120.00280 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99788 * 180.02562 * 5 4 2 8 8 C 1.53784 * 113.61385 * 179.97438 * 7 5 4 9 9 C 1.53778 * 87.08113 * 219.93022 * 8 7 5 10 10 C 1.53777 * 87.17326 * 25.38941 * 9 8 7 11 11 C 1.50701 * 109.47264 * 239.99380 * 2 1 3 12 12 O 1.21282 * 120.00241 * 239.99401 * 11 2 1 13 13 N 1.34777 * 119.99796 * 60.00087 * 11 2 1 14 14 C 1.46501 * 120.00075 * 179.97438 * 13 11 2 15 15 H 1.08999 * 110.55631 * 34.30096 * 14 13 11 16 16 C 1.54852 * 110.62609 * 271.39666 * 14 13 11 17 17 C 1.56217 * 103.26981 * 241.54490 * 16 14 13 18 18 H 1.08997 * 116.12092 * 159.09655 * 17 16 14 19 19 C 1.55845 * 105.00238 * 288.06481 * 17 16 14 20 20 C 1.54850 * 103.44515 * 71.88195 * 19 17 16 21 21 C 1.55845 * 110.62516 * 157.19956 * 14 13 11 22 22 H 1.09002 * 115.56097 * 318.92360 * 21 14 13 23 23 N 1.50233 * 101.11984 * 32.83444 * 17 16 14 24 24 C 1.36941 * 130.84043 * 126.10043 * 23 17 16 25 25 H 1.07998 * 119.99627 * 171.47824 * 24 23 17 26 26 C 1.38812 * 119.99631 * 351.47397 * 24 23 17 27 27 N 1.31622 * 119.99454 * 157.93744 * 26 24 23 28 28 Si 1.86797 * 120.00138 * 337.93855 * 26 24 23 29 29 H 1.48507 * 109.47070 * 93.20248 * 28 26 24 30 30 H 1.48505 * 109.47002 * 213.19848 * 28 26 24 31 31 H 1.48496 * 109.47393 * 333.19842 * 28 26 24 32 32 H 1.09004 * 109.46777 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47330 * 300.00100 * 1 2 3 34 34 H 1.08995 * 109.47231 * 60.00852 * 1 2 3 35 35 H 0.97001 * 119.99578 * 95.00128 * 4 2 1 36 36 H 1.09000 * 112.84835 * 311.18807 * 7 5 4 37 37 H 1.09009 * 113.61549 * 105.38034 * 8 7 5 38 38 H 1.09002 * 113.68905 * 334.49181 * 8 7 5 39 39 H 1.08998 * 113.61604 * 139.97826 * 9 8 7 40 40 H 1.08998 * 113.61649 * 270.79919 * 9 8 7 41 41 H 1.09001 * 113.61707 * 89.15452 * 10 9 8 42 42 H 1.09000 * 113.61556 * 220.06446 * 10 9 8 43 43 H 0.97000 * 120.00173 * 0.02562 * 13 11 2 44 44 H 1.09002 * 110.62554 * 0.02562 * 16 14 13 45 45 H 1.09005 * 110.62405 * 123.01755 * 16 14 13 46 46 H 1.09004 * 110.62770 * 313.39371 * 19 17 16 47 47 H 1.08996 * 110.62736 * 190.37228 * 19 17 16 48 48 H 1.08999 * 110.62530 * 241.51026 * 20 19 17 49 49 H 1.08995 * 110.76346 * 118.55465 * 20 19 17 50 50 H 0.97000 * 119.99677 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3571 6 8 1.8589 1.1588 2.4114 7 6 2.6499 -0.7282 3.5875 8 6 2.7399 0.1768 4.8276 9 6 4.0598 -0.5399 5.1577 10 6 4.1838 -0.8411 3.6548 11 6 2.0323 -0.7105 -1.2304 12 8 2.7297 -1.6965 -1.1190 13 7 1.7067 -0.2502 -2.4545 14 6 2.1955 -0.9405 -3.6507 15 1 2.2514 -2.0151 -3.4764 16 6 3.5768 -0.3842 -4.0754 17 6 3.3081 0.1915 -5.5026 18 1 4.0190 0.9356 -5.8616 19 6 3.1260 -1.0593 -6.4143 20 6 1.7467 -1.6186 -5.9870 21 6 1.2832 -0.6296 -4.8753 22 1 0.2122 -0.6178 -4.6730 23 7 1.8863 0.6566 -5.3644 24 6 1.3155 1.8770 -5.6094 25 1 0.2414 1.9862 -5.5813 26 6 2.1175 2.9738 -5.8936 27 7 1.6166 4.0057 -6.5390 28 14 3.9076 2.9851 -5.3600 29 1 4.7572 2.4761 -6.4666 30 1 4.3145 4.3727 -5.0217 31 1 4.0744 2.1158 -4.1678 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 2.2490 -1.6316 1.1528 36 1 2.1358 -1.6716 3.7715 37 1 1.9508 -0.0033 5.5578 38 1 2.8642 1.2334 4.5906 39 1 4.8358 0.1261 5.5350 40 1 3.9311 -1.4308 5.7724 41 1 4.7037 -0.0635 3.0951 42 1 4.5587 -1.8416 3.4395 43 1 1.1494 0.5387 -2.5436 44 1 3.8984 0.4051 -3.3958 45 1 4.3171 -1.1833 -4.1145 46 1 3.9121 -1.7903 -6.2250 47 1 3.1142 -0.7700 -7.4651 48 1 1.8488 -2.6269 -5.5858 49 1 1.0494 -1.6087 -6.8247 50 1 2.1771 4.7719 -6.7380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111513190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:58 Heat of formation + Delta-G solvation = -3.343604 kcal Electronic energy + Delta-G solvation = -30069.602594 eV Core-core repulsion = 26098.836965 eV Total energy + Delta-G solvation = -3970.765629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71796 -40.04975 -38.92042 -37.56674 -34.98876 -34.12829 -32.61600 -31.10305 -29.76327 -29.25022 -28.21291 -26.95035 -25.91091 -24.55218 -23.95616 -21.89784 -20.87100 -20.30811 -20.06878 -19.63972 -19.21928 -18.07063 -17.20140 -16.67363 -16.30818 -15.99878 -15.82208 -15.41444 -15.01224 -14.63604 -14.42120 -14.09695 -13.76296 -13.49377 -13.26764 -13.20988 -12.89628 -12.75016 -12.71339 -12.48653 -12.30182 -12.19539 -11.84279 -11.60332 -11.47460 -11.36512 -11.13755 -11.00006 -10.91567 -10.84844 -10.70982 -10.62682 -10.30363 -10.01120 -9.86452 -9.71890 -9.54930 -9.34344 -9.21462 -8.91899 -8.74106 -7.32734 -5.99606 -3.25691 2.45417 2.68474 2.82101 3.26521 3.42229 3.45533 3.50225 4.20310 4.28839 4.43321 4.47069 4.50783 4.55659 4.67962 4.87597 4.99450 5.06462 5.14812 5.22189 5.23759 5.28984 5.37680 5.48174 5.50815 5.57368 5.58227 5.62471 5.65414 5.66953 5.76104 5.79016 5.82387 5.86768 5.99858 6.00216 6.09860 6.11488 6.19492 6.25825 6.37463 6.44513 6.57480 6.66839 6.81411 6.92136 7.27855 7.38026 7.71092 8.09593 8.23691 8.31504 8.63572 9.58086 10.16645 11.16540 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002990 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.488799 B = 9360.837485 C = 9915.913717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 H 0.113 0.887 4 N -0.710 5.710 5 C 0.524 3.476 6 O -0.540 6.540 7 C -0.137 4.137 8 C -0.117 4.117 9 C -0.142 4.142 10 C -0.124 4.124 11 C 0.510 3.490 12 O -0.550 6.550 13 N -0.700 5.700 14 C 0.129 3.871 15 H 0.087 0.913 16 C -0.145 4.145 17 C 0.121 3.879 18 H 0.092 0.908 19 C -0.132 4.132 20 C -0.125 4.125 21 C 0.136 3.864 22 H 0.099 0.901 23 N -0.603 5.603 24 C -0.231 4.231 25 H 0.098 0.902 26 C 0.020 3.980 27 N -0.910 5.910 28 Si 0.872 3.128 29 H -0.290 1.290 30 H -0.305 1.305 31 H -0.261 1.261 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.409 0.591 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.408 0.592 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -13.639 17.211 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.013 3.987 3 H 0.131 0.869 4 N -0.363 5.363 5 C 0.311 3.689 6 O -0.417 6.417 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.180 4.180 10 C -0.161 4.161 11 C 0.295 3.705 12 O -0.428 6.428 13 N -0.350 5.350 14 C 0.022 3.978 15 H 0.104 0.896 16 C -0.185 4.185 17 C 0.015 3.985 18 H 0.109 0.891 19 C -0.171 4.171 20 C -0.165 4.165 21 C 0.028 3.972 22 H 0.117 0.883 23 N -0.326 5.326 24 C -0.357 4.357 25 H 0.115 0.885 26 C -0.178 4.178 27 N -0.554 5.554 28 Si 0.704 3.296 29 H -0.219 1.219 30 H -0.233 1.233 31 H -0.186 1.186 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.246 0.754 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.243 0.757 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.388 -13.109 17.198 21.669 hybrid contribution 0.975 0.154 0.011 0.987 sum 2.363 -12.955 17.209 21.669 Atomic orbital electron populations 1.22111 0.92731 1.02938 1.03825 1.20796 0.95799 0.98279 0.83838 0.86906 1.45793 1.67190 1.14796 1.08519 1.20548 0.76885 0.87219 0.84277 1.90702 1.49912 1.15992 1.85056 1.22822 0.98413 1.00891 0.93727 1.22806 0.97600 0.99988 0.95103 1.22833 0.98206 1.00858 0.96089 1.22858 0.93158 1.02874 0.97258 1.20477 0.80394 0.84694 0.84982 1.90651 1.38589 1.26855 1.86736 1.45964 1.52358 1.31741 1.04896 1.22654 0.95062 0.95685 0.84365 0.89550 1.23605 0.96139 1.00007 0.98729 1.23221 0.88547 0.93583 0.93171 0.89097 1.22937 0.96467 0.97536 1.00174 1.22853 0.97355 0.97302 0.99016 1.23134 0.96067 0.87157 0.90862 0.88262 1.46843 1.02916 1.07055 1.75787 1.18603 0.92687 0.82536 1.41917 0.88475 1.24694 0.97334 0.96017 0.99760 1.69835 1.36661 1.08392 1.40494 0.87107 0.86781 0.75834 0.79864 1.21898 1.23348 1.18643 0.91868 0.90961 0.90531 0.75437 0.86926 0.91029 0.88633 0.90957 0.89901 0.89606 0.90513 0.75662 0.91293 0.91777 0.92416 0.91934 0.92314 0.91553 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.38 37.16 0.35 -1.36 16 2 C 0.12 1.56 2.98 -69.08 -0.21 1.35 16 3 H 0.11 1.61 7.58 -51.93 -0.39 1.21 16 4 N -0.71 -8.30 4.95 -54.93 -0.27 -8.57 16 5 C 0.52 6.37 7.33 -10.99 -0.08 6.29 16 6 O -0.54 -8.47 15.56 5.56 0.09 -8.38 16 7 C -0.14 -1.19 4.14 -90.87 -0.38 -1.57 16 8 C -0.12 -0.99 7.40 -25.92 -0.19 -1.18 16 9 C -0.14 -0.97 8.08 -25.92 -0.21 -1.18 16 10 C -0.12 -0.98 7.65 -25.83 -0.20 -1.18 16 11 C 0.51 7.54 7.22 -10.99 -0.08 7.46 16 12 O -0.55 -9.30 15.52 5.56 0.09 -9.21 16 13 N -0.70 -10.69 4.98 -51.40 -0.26 -10.95 16 14 C 0.13 2.10 2.75 -65.43 -0.18 1.92 16 15 H 0.09 1.36 7.29 -51.93 -0.38 0.98 16 16 C -0.14 -2.63 6.02 -24.03 -0.14 -2.78 16 17 C 0.12 2.45 3.58 -62.60 -0.22 2.23 16 18 H 0.09 2.04 3.48 -51.93 -0.18 1.86 16 19 C -0.13 -2.23 6.44 -24.24 -0.16 -2.39 16 20 C -0.13 -1.94 6.44 -24.24 -0.16 -2.10 16 21 C 0.14 2.33 5.05 -62.80 -0.32 2.01 16 22 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 23 N -0.60 -13.10 2.85 -145.60 -0.41 -13.52 16 24 C -0.23 -6.06 10.94 -15.06 -0.16 -6.22 16 25 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 26 C 0.02 0.56 5.49 -17.43 -0.10 0.47 16 27 N -0.91 -27.36 13.97 55.49 0.78 -26.58 16 28 Si 0.87 21.71 24.63 -169.99 -4.19 17.52 16 29 H -0.29 -7.18 6.76 56.52 0.38 -6.79 16 30 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 31 H -0.26 -6.18 4.83 56.52 0.27 -5.90 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.78 7.56 -51.93 -0.39 0.39 16 35 H 0.41 4.36 7.79 -40.82 -0.32 4.04 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.10 0.99 7.44 -51.93 -0.39 0.60 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.41 6.15 8.06 -40.82 -0.33 5.83 16 44 H 0.07 1.40 6.43 -51.93 -0.33 1.06 16 45 H 0.06 1.06 7.82 -51.93 -0.41 0.65 16 46 H 0.06 0.84 7.82 -51.93 -0.41 0.44 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -32.26 387.04 -9.06 -41.32 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.28 Total: 10.77 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.43 Total: 1.77 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.17 Total: -59.62 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.17 Total: -17.60 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.19 Total: 17.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.26 -9.06 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111513190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.978 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds