Wall clock time and date at job start Tue Mar 31 2020 19:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46897 * 2 1 4 4 N 1.46505 * 109.47226 * 119.99187 * 2 1 3 5 5 C 1.34769 * 120.00155 * 275.00478 * 4 2 1 6 6 O 1.21279 * 120.00280 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99788 * 180.02562 * 5 4 2 8 8 C 1.53784 * 113.61385 * 179.97438 * 7 5 4 9 9 C 1.53778 * 87.08113 * 219.93022 * 8 7 5 10 10 C 1.53777 * 87.17326 * 25.38941 * 9 8 7 11 11 C 1.50701 * 109.47264 * 239.99380 * 2 1 3 12 12 O 1.21282 * 120.00241 * 239.99401 * 11 2 1 13 13 N 1.34777 * 119.99796 * 60.00087 * 11 2 1 14 14 C 1.46501 * 120.00075 * 179.97438 * 13 11 2 15 15 H 1.08999 * 110.55631 * 34.30096 * 14 13 11 16 16 C 1.54852 * 110.62609 * 271.39666 * 14 13 11 17 17 C 1.56217 * 103.26981 * 241.54490 * 16 14 13 18 18 H 1.08997 * 116.12092 * 159.09655 * 17 16 14 19 19 C 1.55845 * 105.00238 * 288.06481 * 17 16 14 20 20 C 1.54850 * 103.44515 * 71.88195 * 19 17 16 21 21 C 1.55845 * 110.62516 * 157.19956 * 14 13 11 22 22 H 1.09002 * 115.56097 * 318.92360 * 21 14 13 23 23 N 1.50233 * 101.11984 * 32.83444 * 17 16 14 24 24 C 1.36941 * 130.84043 * 126.10043 * 23 17 16 25 25 H 1.07998 * 119.99627 * 171.47824 * 24 23 17 26 26 C 1.38812 * 119.99631 * 351.47397 * 24 23 17 27 27 N 1.31622 * 119.99454 * 157.93744 * 26 24 23 28 28 Si 1.86797 * 120.00138 * 337.93855 * 26 24 23 29 29 H 1.48507 * 109.47070 * 93.20248 * 28 26 24 30 30 H 1.48505 * 109.47002 * 213.19848 * 28 26 24 31 31 H 1.48496 * 109.47393 * 333.19842 * 28 26 24 32 32 H 1.09004 * 109.46777 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47330 * 300.00100 * 1 2 3 34 34 H 1.08995 * 109.47231 * 60.00852 * 1 2 3 35 35 H 0.97001 * 119.99578 * 95.00128 * 4 2 1 36 36 H 1.09000 * 112.84835 * 311.18807 * 7 5 4 37 37 H 1.09009 * 113.61549 * 105.38034 * 8 7 5 38 38 H 1.09002 * 113.68905 * 334.49181 * 8 7 5 39 39 H 1.08998 * 113.61604 * 139.97826 * 9 8 7 40 40 H 1.08998 * 113.61649 * 270.79919 * 9 8 7 41 41 H 1.09001 * 113.61707 * 89.15452 * 10 9 8 42 42 H 1.09000 * 113.61556 * 220.06446 * 10 9 8 43 43 H 0.97000 * 120.00173 * 0.02562 * 13 11 2 44 44 H 1.09002 * 110.62554 * 0.02562 * 16 14 13 45 45 H 1.09005 * 110.62405 * 123.01755 * 16 14 13 46 46 H 1.09004 * 110.62770 * 313.39371 * 19 17 16 47 47 H 1.08996 * 110.62736 * 190.37228 * 19 17 16 48 48 H 1.08999 * 110.62530 * 241.51026 * 20 19 17 49 49 H 1.08995 * 110.76346 * 118.55465 * 20 19 17 50 50 H 0.97000 * 119.99677 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3571 6 8 1.8589 1.1588 2.4114 7 6 2.6499 -0.7282 3.5875 8 6 2.7399 0.1768 4.8276 9 6 4.0598 -0.5399 5.1577 10 6 4.1838 -0.8411 3.6548 11 6 2.0323 -0.7105 -1.2304 12 8 2.7297 -1.6965 -1.1190 13 7 1.7067 -0.2502 -2.4545 14 6 2.1955 -0.9405 -3.6507 15 1 2.2514 -2.0151 -3.4764 16 6 3.5768 -0.3842 -4.0754 17 6 3.3081 0.1915 -5.5026 18 1 4.0190 0.9356 -5.8616 19 6 3.1260 -1.0593 -6.4143 20 6 1.7467 -1.6186 -5.9870 21 6 1.2832 -0.6296 -4.8753 22 1 0.2122 -0.6178 -4.6730 23 7 1.8863 0.6566 -5.3644 24 6 1.3155 1.8770 -5.6094 25 1 0.2414 1.9862 -5.5813 26 6 2.1175 2.9738 -5.8936 27 7 1.6166 4.0057 -6.5390 28 14 3.9076 2.9851 -5.3600 29 1 4.7572 2.4761 -6.4666 30 1 4.3145 4.3727 -5.0217 31 1 4.0744 2.1158 -4.1678 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 2.2490 -1.6316 1.1528 36 1 2.1358 -1.6716 3.7715 37 1 1.9508 -0.0033 5.5578 38 1 2.8642 1.2334 4.5906 39 1 4.8358 0.1261 5.5350 40 1 3.9311 -1.4308 5.7724 41 1 4.7037 -0.0635 3.0951 42 1 4.5587 -1.8416 3.4395 43 1 1.1494 0.5387 -2.5436 44 1 3.8984 0.4051 -3.3958 45 1 4.3171 -1.1833 -4.1145 46 1 3.9121 -1.7903 -6.2250 47 1 3.1142 -0.7700 -7.4651 48 1 1.8488 -2.6269 -5.5858 49 1 1.0494 -1.6087 -6.8247 50 1 2.1771 4.7719 -6.7380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111513190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:57 Heat of formation + Delta-G solvation = -25.859458 kcal Electronic energy + Delta-G solvation = -30070.578955 eV Core-core repulsion = 26098.836965 eV Total energy + Delta-G solvation = -3971.741990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81049 -41.22808 -40.14429 -38.40979 -36.05565 -35.45880 -34.56716 -32.13588 -31.54364 -30.67545 -29.53912 -27.68914 -26.54690 -26.02242 -25.36549 -23.07121 -21.98488 -21.85179 -21.22907 -20.70977 -20.31596 -19.06274 -18.92566 -17.91142 -17.52298 -17.36768 -16.91636 -16.52857 -16.00757 -15.87278 -15.48897 -15.40941 -15.30118 -14.96488 -14.78947 -14.46467 -14.03280 -13.81422 -13.69310 -13.44011 -13.41865 -13.30179 -13.02824 -12.92076 -12.86926 -12.71060 -12.62180 -12.36276 -12.16479 -12.09545 -11.91671 -11.48232 -11.44901 -11.31452 -11.30230 -11.15886 -10.90312 -10.87244 -10.74243 -10.26999 -10.06520 -9.22037 -8.13797 -5.32367 1.24054 1.37807 1.43552 1.44333 1.55374 1.80412 2.41005 2.41952 2.91407 3.21051 3.48932 3.54045 3.64218 3.74573 3.79776 3.84817 3.91228 3.97112 4.05329 4.08876 4.21081 4.22394 4.36531 4.43868 4.55040 4.58791 4.62731 4.68148 4.74577 4.76120 4.77875 4.79450 4.85315 5.02213 5.06033 5.08409 5.10108 5.11593 5.16845 5.21184 5.27187 5.34137 5.39863 5.51583 5.58582 5.61816 6.13187 6.45464 6.48217 6.62859 7.08251 7.16787 7.50812 8.23416 9.06545 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002990 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.488799 B = 9360.837485 C = 9915.913717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.124 3.876 3 H 0.095 0.905 4 N -0.703 5.703 5 C 0.520 3.480 6 O -0.582 6.582 7 C -0.134 4.134 8 C -0.124 4.124 9 C -0.130 4.130 10 C -0.125 4.125 11 C 0.516 3.484 12 O -0.566 6.566 13 N -0.702 5.702 14 C 0.139 3.861 15 H 0.106 0.894 16 C -0.139 4.139 17 C 0.104 3.896 18 H 0.065 0.935 19 C -0.126 4.126 20 C -0.116 4.116 21 C 0.135 3.865 22 H 0.111 0.889 23 N -0.624 5.624 24 C -0.196 4.196 25 H 0.076 0.924 26 C -0.043 4.043 27 N -0.963 5.963 28 Si 0.927 3.073 29 H -0.291 1.291 30 H -0.325 1.325 31 H -0.245 1.245 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.417 0.583 36 H 0.143 0.857 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.408 0.592 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.050 0.950 48 H 0.096 0.904 49 H 0.065 0.935 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.572 -17.646 18.851 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 H 0.113 0.887 4 N -0.357 5.357 5 C 0.308 3.692 6 O -0.462 6.462 7 C -0.154 4.154 8 C -0.162 4.162 9 C -0.167 4.167 10 C -0.163 4.163 11 C 0.302 3.698 12 O -0.446 6.446 13 N -0.351 5.351 14 C 0.033 3.967 15 H 0.124 0.876 16 C -0.179 4.179 17 C -0.002 4.002 18 H 0.083 0.917 19 C -0.165 4.165 20 C -0.156 4.156 21 C 0.029 3.971 22 H 0.129 0.871 23 N -0.348 5.348 24 C -0.324 4.324 25 H 0.093 0.907 26 C -0.236 4.236 27 N -0.612 5.612 28 Si 0.761 3.239 29 H -0.220 1.220 30 H -0.256 1.256 31 H -0.170 1.170 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.255 0.745 36 H 0.160 0.840 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.243 0.757 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.069 0.931 48 H 0.114 0.886 49 H 0.084 0.916 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.783 -17.216 18.864 25.601 hybrid contribution 0.804 1.303 -0.492 1.608 sum 2.588 -15.913 18.372 24.443 Atomic orbital electron populations 1.22050 0.91064 1.03804 1.03837 1.20720 0.97045 0.97152 0.83596 0.88718 1.45793 1.66806 1.15026 1.08050 1.21238 0.75943 0.86842 0.85148 1.90685 1.51804 1.17944 1.85726 1.22986 0.99032 1.01672 0.91754 1.22807 0.99259 0.98639 0.95489 1.22825 0.96967 1.01423 0.95487 1.22865 0.92270 1.03150 0.97999 1.20655 0.79738 0.84292 0.85124 1.90639 1.39277 1.27676 1.86981 1.45981 1.52387 1.31756 1.04993 1.22548 0.93501 0.96549 0.84101 0.87600 1.23555 0.97859 0.99904 0.96582 1.23383 0.87004 0.94440 0.95343 0.91698 1.22915 0.98484 0.96490 0.98631 1.22828 0.96117 0.98390 0.98238 1.23422 0.96890 0.85049 0.91761 0.87130 1.46947 1.04450 1.06980 1.76403 1.18577 0.91842 0.84102 1.37891 0.90674 1.25218 1.00505 0.96425 1.01498 1.69952 1.37888 1.09466 1.43849 0.86205 0.83162 0.74585 0.79961 1.22010 1.25550 1.16975 0.90490 0.91475 0.90024 0.74541 0.83969 0.89764 0.91336 0.90853 0.87570 0.91695 0.88778 0.75663 0.93740 0.89389 0.89258 0.93133 0.88610 0.91622 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.38 71.98 0.68 -2.36 16 2 C 0.12 3.05 2.98 44.24 0.13 3.18 16 3 H 0.09 2.73 7.58 -2.39 -0.02 2.71 16 4 N -0.70 -15.49 4.95 -446.10 -2.21 -17.70 16 5 C 0.52 12.27 7.33 87.66 0.64 12.91 16 6 O -0.58 -18.59 15.56 -3.03 -0.05 -18.63 16 7 C -0.13 -2.07 4.14 -10.95 -0.05 -2.11 16 8 C -0.12 -1.94 7.40 31.12 0.23 -1.71 16 9 C -0.13 -1.46 8.08 31.12 0.25 -1.21 16 10 C -0.12 -1.75 7.65 31.18 0.24 -1.51 16 11 C 0.52 14.22 7.22 87.66 0.63 14.86 16 12 O -0.57 -17.56 15.52 -3.04 -0.05 -17.61 16 13 N -0.70 -19.96 4.98 -434.91 -2.16 -22.12 16 14 C 0.14 4.07 2.75 46.61 0.13 4.20 16 15 H 0.11 2.80 7.29 -2.39 -0.02 2.78 16 16 C -0.14 -4.66 6.02 32.34 0.19 -4.47 16 17 C 0.10 4.01 3.58 46.36 0.17 4.17 16 18 H 0.07 2.86 3.48 -2.39 -0.01 2.85 16 19 C -0.13 -3.85 6.44 32.21 0.21 -3.64 16 20 C -0.12 -3.11 6.44 32.21 0.21 -2.90 16 21 C 0.14 4.22 5.05 46.23 0.23 4.46 16 22 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 23 N -0.62 -26.38 2.85 -614.56 -1.75 -28.13 16 24 C -0.20 -10.37 10.94 84.03 0.92 -9.45 16 25 H 0.08 4.24 8.06 -2.91 -0.02 4.22 16 26 C -0.04 -2.48 5.49 84.86 0.47 -2.01 16 27 N -0.96 -60.32 13.97 21.65 0.30 -60.01 16 28 Si 0.93 46.57 24.63 68.60 1.69 48.26 16 29 H -0.29 -14.40 6.76 99.48 0.67 -13.73 16 30 H -0.33 -17.19 7.11 99.48 0.71 -16.48 16 31 H -0.25 -11.44 4.83 99.48 0.48 -10.96 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.57 7.56 -2.39 -0.02 1.55 16 35 H 0.42 7.95 7.79 -92.71 -0.72 7.23 16 36 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.45 7.44 -2.39 -0.02 1.44 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.41 11.77 8.06 -92.71 -0.75 11.02 16 44 H 0.04 1.71 6.43 -2.39 -0.02 1.69 16 45 H 0.09 2.54 7.82 -2.38 -0.02 2.52 16 46 H 0.09 2.18 7.82 -2.39 -0.02 2.16 16 47 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.10 1.93 7.82 -2.39 -0.02 1.91 16 49 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -72.64 387.04 0.29 -72.35 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.77 Total: 31.21 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.28 Total: 12.40 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -5.82 Total: -127.97 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.09 Total: -36.24 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.69 Total: 48.26 kcal Total: -72.64 0.29 -72.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111513190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.492 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds