Wall clock time and date at job start Tue Mar 31 2020 18:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46966 * 2 1 4 4 N 1.46497 * 109.47014 * 120.00108 * 2 1 3 5 5 C 1.34784 * 120.00088 * 274.72038 * 4 2 1 6 6 O 1.21276 * 119.99652 * 0.28238 * 5 4 2 7 7 C 1.50696 * 120.00031 * 180.27501 * 5 4 2 8 8 C 1.53787 * 113.61631 * 279.14252 * 7 5 4 9 9 C 1.53952 * 87.01679 * 220.04775 * 8 7 5 10 10 C 1.53781 * 113.61416 * 181.53194 * 7 5 4 11 11 C 1.50696 * 109.47109 * 240.00140 * 2 1 3 12 12 O 1.21279 * 120.00272 * 240.00039 * 11 2 1 13 13 N 1.34775 * 119.99959 * 59.99680 * 11 2 1 14 14 C 1.47389 * 135.85636 * 359.63948 * 13 11 2 15 15 C 1.52074 * 87.41506 * 154.38237 * 14 13 11 16 16 C 1.47400 * 135.85274 * 179.97438 * 13 11 2 17 17 C 1.53514 * 117.21250 * 267.28186 * 15 14 13 18 18 C 1.54639 * 102.69876 * 262.92972 * 17 15 14 19 19 N 1.47148 * 107.37738 * 339.38376 * 18 17 15 20 20 C 1.36931 * 125.57916 * 179.06737 * 19 18 17 21 21 H 1.08001 * 120.00186 * 174.81920 * 20 19 18 22 22 C 1.38817 * 120.00029 * 354.81785 * 20 19 18 23 23 N 1.31622 * 119.99884 * 7.06384 * 22 20 19 24 24 Si 1.86795 * 120.00002 * 187.05982 * 22 20 19 25 25 H 1.48496 * 109.47258 * 94.98671 * 24 22 20 26 26 H 1.48500 * 109.47341 * 214.99140 * 24 22 20 27 27 H 1.48505 * 109.47414 * 334.98608 * 24 22 20 28 28 C 1.47758 * 108.83935 * 359.08725 * 19 18 17 29 29 H 1.08996 * 109.47011 * 59.99546 * 1 2 3 30 30 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46817 * 300.00263 * 1 2 3 32 32 H 0.97005 * 120.00354 * 94.99876 * 4 2 1 33 33 H 1.09001 * 112.85131 * 50.33813 * 7 5 4 34 34 H 1.08997 * 113.61120 * 334.56337 * 8 7 5 35 35 H 1.08992 * 113.61726 * 105.47235 * 8 7 5 36 36 H 1.09000 * 113.54092 * 270.80961 * 9 8 7 37 37 H 1.09000 * 113.66840 * 139.92764 * 9 8 7 38 38 H 1.08993 * 113.61202 * 254.53061 * 10 7 5 39 39 H 1.08997 * 113.61467 * 25.34990 * 10 7 5 40 40 H 1.09000 * 113.54371 * 268.99715 * 14 13 11 41 41 H 1.09003 * 113.54537 * 39.66768 * 14 13 11 42 42 H 1.09000 * 113.54537 * 320.33236 * 16 13 11 43 43 H 1.09001 * 113.53875 * 90.93604 * 16 13 11 44 44 H 1.09002 * 110.76589 * 21.23015 * 17 15 14 45 45 H 1.09000 * 110.76497 * 144.62875 * 17 15 14 46 46 H 1.08999 * 109.86398 * 98.83369 * 18 17 15 47 47 H 1.08999 * 109.86085 * 219.93315 * 18 17 15 48 48 H 0.96997 * 119.99667 * 179.97438 * 23 22 20 49 49 H 1.08994 * 110.40686 * 263.50298 * 28 19 18 50 50 H 1.09004 * 110.40193 * 141.07574 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1524 -0.0169 2.3558 6 8 1.8639 1.1598 2.4102 7 6 2.6606 -0.7258 3.5847 8 6 1.5813 -1.5415 4.3160 9 6 2.2064 -1.0393 5.6302 10 6 2.7205 0.1708 4.8326 11 6 2.0324 -0.7104 -1.2304 12 8 2.7296 -1.6964 -1.1193 13 7 1.7067 -0.2499 -2.4545 14 6 0.9076 0.8689 -2.9856 15 6 1.7689 0.7997 -4.2370 16 6 1.9899 -0.6496 -3.8447 17 6 3.0081 1.7045 -4.2872 18 6 2.5047 2.9261 -5.0907 19 7 1.3198 2.4952 -5.8494 20 6 0.5685 3.2904 -6.6729 21 1 -0.2351 2.8607 -7.2526 22 6 0.8396 4.6489 -6.7625 23 7 1.9016 5.1487 -6.1669 24 14 -0.3027 5.7675 -7.7285 25 1 -1.2878 6.3856 -6.8051 26 1 0.4915 6.8332 -8.3908 27 1 -1.0201 4.9728 -8.7578 28 6 1.0732 1.0640 -5.5767 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 1.1526 33 1 3.5799 -1.2825 3.4025 34 1 0.5684 -1.1761 4.1467 35 1 1.6739 -2.6177 4.1706 36 1 3.0010 -1.6827 6.0080 37 1 1.4722 -0.7795 6.3927 38 1 3.7315 0.4748 5.1036 39 1 2.0207 1.0060 4.8041 40 1 -0.1372 0.6128 -3.1614 41 1 1.0274 1.7950 -2.4233 42 1 3.0133 -0.9913 -3.9997 43 1 1.2491 -1.3323 -4.2609 44 1 3.3112 2.0008 -3.2830 45 1 3.8271 1.2095 -4.8091 46 1 2.2348 3.7323 -4.4087 47 1 3.2814 3.2635 -5.7770 48 1 2.0912 6.0979 -6.2299 49 1 1.5115 0.4468 -6.3609 50 1 0.0034 0.8719 -5.4938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148923048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:05 Heat of formation + Delta-G solvation = 14.708023 kcal Electronic energy + Delta-G solvation = -29406.934709 eV Core-core repulsion = 25436.951857 eV Total energy + Delta-G solvation = -3969.982852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01379 -40.40942 -38.75856 -37.57495 -35.75248 -35.06011 -32.37374 -31.34081 -29.42577 -28.67210 -27.02697 -26.07186 -26.01249 -25.94793 -24.33235 -23.32024 -21.06322 -20.36464 -19.94983 -19.33577 -18.46493 -17.95023 -16.89176 -16.75059 -16.37423 -15.84376 -15.72080 -15.45759 -14.89849 -14.82918 -14.54512 -14.27350 -13.87867 -13.77131 -13.24082 -13.16560 -12.86196 -12.81096 -12.49051 -12.45681 -12.40307 -12.29365 -11.97926 -11.87618 -11.75594 -11.51723 -11.06857 -10.92974 -10.90406 -10.77081 -10.72710 -10.48250 -10.25496 -10.12734 -9.95918 -9.92156 -9.72980 -9.67028 -9.32224 -8.68249 -8.61081 -6.87879 -5.76124 -3.08911 2.36381 2.45706 2.61129 3.12929 3.38131 3.43485 3.45675 4.13851 4.18353 4.22678 4.37544 4.44336 4.45139 4.58116 4.80677 4.83816 4.92294 4.98835 5.16463 5.20190 5.30081 5.34621 5.41471 5.44505 5.46413 5.50504 5.56783 5.60419 5.61208 5.62082 5.70320 5.73922 5.77619 5.80656 5.91731 6.04552 6.09166 6.17872 6.19248 6.41380 6.46566 6.60544 6.65042 7.29784 7.51333 7.58095 7.67936 7.78817 7.96577 8.05866 8.20808 9.17278 9.77622 10.43220 11.35801 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.002298 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.811502 B =12183.912250 C =12885.583173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.114 0.886 4 N -0.712 5.712 5 C 0.525 3.475 6 O -0.538 6.538 7 C -0.138 4.138 8 C -0.124 4.124 9 C -0.142 4.142 10 C -0.118 4.118 11 C 0.539 3.461 12 O -0.548 6.548 13 N -0.637 5.637 14 C 0.117 3.883 15 C -0.105 4.105 16 C 0.120 3.880 17 C -0.117 4.117 18 C 0.178 3.822 19 N -0.604 5.604 20 C -0.230 4.230 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.154 3.846 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.409 0.591 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.042 0.958 48 H 0.253 0.747 49 H 0.027 0.973 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -14.811 18.369 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 H 0.132 0.868 4 N -0.365 5.365 5 C 0.312 3.688 6 O -0.415 6.415 7 C -0.159 4.159 8 C -0.162 4.162 9 C -0.179 4.179 10 C -0.155 4.155 11 C 0.328 3.672 12 O -0.427 6.427 13 N -0.371 5.371 14 C -0.005 4.005 15 C -0.107 4.107 16 C -0.002 4.002 17 C -0.156 4.156 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.027 3.973 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.245 0.755 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.044 0.956 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.330 -14.325 18.604 23.482 hybrid contribution -0.411 0.198 -0.686 0.824 sum -0.741 -14.127 17.918 22.829 Atomic orbital electron populations 1.22129 0.92721 1.02892 1.03914 1.20659 0.95774 0.98180 0.83285 0.86833 1.45815 1.67453 1.14731 1.08523 1.20563 0.77159 0.87072 0.84030 1.90708 1.50056 1.15896 1.84791 1.22810 1.01038 0.99752 0.92335 1.22863 0.97948 0.99739 0.95639 1.22863 1.00671 0.97919 0.96492 1.22810 1.02700 0.97187 0.92850 1.20032 0.80234 0.83849 0.83067 1.90672 1.39312 1.26853 1.85858 1.49734 1.51137 1.31747 1.04474 1.22997 0.95768 0.89314 0.92423 1.22185 0.98198 0.94118 0.96168 1.22814 1.02069 0.97062 0.78256 1.22476 0.94843 0.97666 1.00587 1.21241 0.88928 0.91214 0.93257 1.44541 1.31027 1.04396 1.53147 1.19035 1.10282 0.88868 1.17652 0.90360 1.24824 0.98063 0.96822 1.00573 1.69971 1.26230 1.12392 1.48006 0.86130 0.80020 0.80656 0.79141 1.21602 1.21811 1.20639 1.21137 0.96967 0.87960 0.91219 0.90552 0.91973 0.90852 0.75452 0.86766 0.89627 0.90569 0.89855 0.90915 0.90930 0.88614 0.89135 0.89796 0.90348 0.89567 0.92094 0.91760 0.93296 0.93951 0.93698 0.95584 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.37 37.16 0.35 -1.32 16 2 C 0.13 1.59 2.86 -69.08 -0.20 1.39 16 3 H 0.11 1.55 7.57 -51.93 -0.39 1.16 16 4 N -0.71 -7.94 4.95 -54.93 -0.27 -8.22 16 5 C 0.53 6.10 7.32 -10.98 -0.08 6.02 16 6 O -0.54 -8.16 15.57 5.56 0.09 -8.08 16 7 C -0.14 -1.13 4.14 -90.96 -0.38 -1.51 16 8 C -0.12 -0.81 7.64 -25.83 -0.20 -1.01 16 9 C -0.14 -0.85 8.09 -25.83 -0.21 -1.06 16 10 C -0.12 -0.94 7.40 -25.92 -0.19 -1.13 16 11 C 0.54 7.62 7.47 -10.99 -0.08 7.53 16 12 O -0.55 -9.06 16.61 5.56 0.09 -8.96 16 13 N -0.64 -8.66 3.65 -185.71 -0.68 -9.34 16 14 C 0.12 1.59 6.08 -7.33 -0.04 1.54 16 15 C -0.10 -1.62 1.06 -155.23 -0.16 -1.78 16 16 C 0.12 1.60 8.02 -7.48 -0.06 1.54 16 17 C -0.12 -2.07 6.40 -25.60 -0.16 -2.23 16 18 C 0.18 4.10 5.40 -2.83 -0.02 4.08 16 19 N -0.60 -14.42 3.41 -170.53 -0.58 -15.00 16 20 C -0.23 -6.12 10.26 -15.06 -0.15 -6.27 16 21 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 22 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 23 N -0.92 -26.31 10.35 55.49 0.57 -25.73 16 24 Si 0.91 21.53 29.56 -169.99 -5.02 16.51 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.15 2.82 6.70 -3.22 -0.02 2.80 16 29 H 0.08 0.77 6.28 -51.93 -0.33 0.45 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.41 4.14 7.79 -40.82 -0.32 3.82 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.93 7.45 -51.93 -0.39 0.54 16 40 H 0.09 1.09 7.98 -51.93 -0.41 0.67 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 1.25 7.30 -51.93 -0.38 0.88 16 47 H 0.04 1.10 7.60 -51.93 -0.39 0.70 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -32.29 399.10 -9.98 -42.27 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.49 Total: 2.20 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.71 Total: 8.34 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.96 Total: -58.29 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.18 Total: -17.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.29 -9.98 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148923048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.977 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds