Wall clock time and date at job start Tue Mar 31 2020 18:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46966 * 2 1 4 4 N 1.46497 * 109.47014 * 120.00108 * 2 1 3 5 5 C 1.34784 * 120.00088 * 274.72038 * 4 2 1 6 6 O 1.21276 * 119.99652 * 0.28238 * 5 4 2 7 7 C 1.50696 * 120.00031 * 180.27501 * 5 4 2 8 8 C 1.53787 * 113.61631 * 279.14252 * 7 5 4 9 9 C 1.53952 * 87.01679 * 220.04775 * 8 7 5 10 10 C 1.53781 * 113.61416 * 181.53194 * 7 5 4 11 11 C 1.50696 * 109.47109 * 240.00140 * 2 1 3 12 12 O 1.21279 * 120.00272 * 240.00039 * 11 2 1 13 13 N 1.34775 * 119.99959 * 59.99680 * 11 2 1 14 14 C 1.47389 * 135.85636 * 359.63948 * 13 11 2 15 15 C 1.52074 * 87.41506 * 154.38237 * 14 13 11 16 16 C 1.47400 * 135.85274 * 179.97438 * 13 11 2 17 17 C 1.53514 * 117.21250 * 267.28186 * 15 14 13 18 18 C 1.54639 * 102.69876 * 262.92972 * 17 15 14 19 19 N 1.47148 * 107.37738 * 339.38376 * 18 17 15 20 20 C 1.36931 * 125.57916 * 179.06737 * 19 18 17 21 21 H 1.08001 * 120.00186 * 174.81920 * 20 19 18 22 22 C 1.38817 * 120.00029 * 354.81785 * 20 19 18 23 23 N 1.31622 * 119.99884 * 7.06384 * 22 20 19 24 24 Si 1.86795 * 120.00002 * 187.05982 * 22 20 19 25 25 H 1.48496 * 109.47258 * 94.98671 * 24 22 20 26 26 H 1.48500 * 109.47341 * 214.99140 * 24 22 20 27 27 H 1.48505 * 109.47414 * 334.98608 * 24 22 20 28 28 C 1.47758 * 108.83935 * 359.08725 * 19 18 17 29 29 H 1.08996 * 109.47011 * 59.99546 * 1 2 3 30 30 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46817 * 300.00263 * 1 2 3 32 32 H 0.97005 * 120.00354 * 94.99876 * 4 2 1 33 33 H 1.09001 * 112.85131 * 50.33813 * 7 5 4 34 34 H 1.08997 * 113.61120 * 334.56337 * 8 7 5 35 35 H 1.08992 * 113.61726 * 105.47235 * 8 7 5 36 36 H 1.09000 * 113.54092 * 270.80961 * 9 8 7 37 37 H 1.09000 * 113.66840 * 139.92764 * 9 8 7 38 38 H 1.08993 * 113.61202 * 254.53061 * 10 7 5 39 39 H 1.08997 * 113.61467 * 25.34990 * 10 7 5 40 40 H 1.09000 * 113.54371 * 268.99715 * 14 13 11 41 41 H 1.09003 * 113.54537 * 39.66768 * 14 13 11 42 42 H 1.09000 * 113.54537 * 320.33236 * 16 13 11 43 43 H 1.09001 * 113.53875 * 90.93604 * 16 13 11 44 44 H 1.09002 * 110.76589 * 21.23015 * 17 15 14 45 45 H 1.09000 * 110.76497 * 144.62875 * 17 15 14 46 46 H 1.08999 * 109.86398 * 98.83369 * 18 17 15 47 47 H 1.08999 * 109.86085 * 219.93315 * 18 17 15 48 48 H 0.96997 * 119.99667 * 179.97438 * 23 22 20 49 49 H 1.08994 * 110.40686 * 263.50298 * 28 19 18 50 50 H 1.09004 * 110.40193 * 141.07574 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1524 -0.0169 2.3558 6 8 1.8639 1.1598 2.4102 7 6 2.6606 -0.7258 3.5847 8 6 1.5813 -1.5415 4.3160 9 6 2.2064 -1.0393 5.6302 10 6 2.7205 0.1708 4.8326 11 6 2.0324 -0.7104 -1.2304 12 8 2.7296 -1.6964 -1.1193 13 7 1.7067 -0.2499 -2.4545 14 6 0.9076 0.8689 -2.9856 15 6 1.7689 0.7997 -4.2370 16 6 1.9899 -0.6496 -3.8447 17 6 3.0081 1.7045 -4.2872 18 6 2.5047 2.9261 -5.0907 19 7 1.3198 2.4952 -5.8494 20 6 0.5685 3.2904 -6.6729 21 1 -0.2351 2.8607 -7.2526 22 6 0.8396 4.6489 -6.7625 23 7 1.9016 5.1487 -6.1669 24 14 -0.3027 5.7675 -7.7285 25 1 -1.2878 6.3856 -6.8051 26 1 0.4915 6.8332 -8.3908 27 1 -1.0201 4.9728 -8.7578 28 6 1.0732 1.0640 -5.5767 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 1.1526 33 1 3.5799 -1.2825 3.4025 34 1 0.5684 -1.1761 4.1467 35 1 1.6739 -2.6177 4.1706 36 1 3.0010 -1.6827 6.0080 37 1 1.4722 -0.7795 6.3927 38 1 3.7315 0.4748 5.1036 39 1 2.0207 1.0060 4.8041 40 1 -0.1372 0.6128 -3.1614 41 1 1.0274 1.7950 -2.4233 42 1 3.0133 -0.9913 -3.9997 43 1 1.2491 -1.3323 -4.2609 44 1 3.3112 2.0008 -3.2830 45 1 3.8271 1.2095 -4.8091 46 1 2.2348 3.7323 -4.4087 47 1 3.2814 3.2635 -5.7770 48 1 2.0912 6.0979 -6.2299 49 1 1.5115 0.4468 -6.3609 50 1 0.0034 0.8719 -5.4938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148923048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:05 Heat of formation + Delta-G solvation = -6.034106 kcal Electronic energy + Delta-G solvation = -29407.834155 eV Core-core repulsion = 25436.951857 eV Total energy + Delta-G solvation = -3970.882298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13951 -41.34006 -39.86861 -38.39313 -37.34519 -36.07406 -34.13866 -32.45894 -31.04694 -30.09547 -27.72484 -27.52981 -27.14309 -26.54387 -25.82834 -24.53085 -22.15130 -21.89614 -20.88143 -20.24406 -19.74746 -18.85453 -18.59350 -17.89122 -17.40282 -16.97582 -16.72669 -16.49837 -16.39218 -15.99039 -15.75512 -15.59308 -15.24333 -14.91535 -14.41677 -14.15941 -13.85174 -13.84353 -13.72249 -13.54699 -13.49226 -13.39941 -13.18964 -13.02411 -12.88033 -12.79659 -12.68276 -12.26569 -12.16367 -12.00328 -11.90044 -11.82555 -11.70531 -11.44322 -11.30870 -11.23231 -10.98311 -10.76317 -10.64760 -10.30043 -9.80913 -8.84477 -7.82268 -5.15618 1.37026 1.41629 1.49353 1.50407 1.59007 1.61843 2.19480 2.52648 3.10104 3.29636 3.43813 3.50838 3.56459 3.64158 3.75859 3.80316 3.91438 3.95323 3.98927 4.03289 4.19676 4.21334 4.34864 4.53021 4.55245 4.61514 4.67297 4.69192 4.70072 4.74085 4.79519 4.85862 4.86816 4.92861 5.02902 5.03414 5.06006 5.09820 5.17211 5.17489 5.21531 5.25435 5.52043 5.52256 5.67556 5.80192 6.22891 6.42683 6.56043 6.88122 7.13621 7.14257 7.81858 8.46259 9.28771 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.002298 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.811502 B =12183.912250 C =12885.583173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.131 3.869 3 H 0.096 0.904 4 N -0.706 5.706 5 C 0.522 3.478 6 O -0.580 6.580 7 C -0.138 4.138 8 C -0.118 4.118 9 C -0.130 4.130 10 C -0.127 4.127 11 C 0.542 3.458 12 O -0.572 6.572 13 N -0.635 5.635 14 C 0.122 3.878 15 C -0.101 4.101 16 C 0.130 3.870 17 C -0.103 4.103 18 C 0.189 3.811 19 N -0.625 5.625 20 C -0.233 4.233 21 H 0.088 0.912 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.973 3.027 25 H -0.289 1.289 26 H -0.301 1.301 27 H -0.265 1.265 28 C 0.152 3.848 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.416 0.584 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.012 0.988 47 H 0.001 0.999 48 H 0.244 0.756 49 H 0.036 0.964 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -17.626 19.078 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 H 0.114 0.886 4 N -0.359 5.359 5 C 0.310 3.690 6 O -0.460 6.460 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.167 4.167 10 C -0.165 4.165 11 C 0.332 3.668 12 O -0.452 6.452 13 N -0.369 5.369 14 C 0.000 4.000 15 C -0.103 4.103 16 C 0.008 3.992 17 C -0.142 4.142 18 C 0.063 3.937 19 N -0.352 5.352 20 C -0.362 4.362 21 H 0.106 0.894 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.802 3.198 25 H -0.216 1.216 26 H -0.228 1.228 27 H -0.190 1.190 28 C 0.027 3.973 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.254 0.746 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.030 0.970 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.469 -17.204 19.302 25.899 hybrid contribution -0.033 1.055 -0.945 1.417 sum -1.503 -16.150 18.357 24.496 Atomic orbital electron populations 1.22064 0.91183 1.03654 1.03889 1.20607 0.96923 0.97104 0.83125 0.88572 1.45821 1.67046 1.14961 1.08102 1.21225 0.76255 0.86663 0.84832 1.90689 1.51996 1.17837 1.85456 1.22971 1.02393 1.00046 0.90516 1.22865 0.96844 1.00581 0.95334 1.22851 1.01057 0.96680 0.96160 1.22830 1.02541 0.97412 0.93697 1.20207 0.79720 0.83522 0.83394 1.90662 1.40362 1.27987 1.86180 1.49681 1.50949 1.31590 1.04643 1.23043 0.96741 0.89182 0.91037 1.22006 0.97030 0.95647 0.95590 1.22838 1.03188 0.95476 0.77725 1.22261 0.96169 0.95879 0.99859 1.20917 0.87904 0.92703 0.92144 1.44833 1.30950 1.06698 1.52713 1.19461 1.10065 0.89381 1.17313 0.89418 1.25631 0.99580 0.98489 1.02415 1.70197 1.28039 1.11904 1.50015 0.85125 0.78019 0.78568 0.78048 1.21597 1.22824 1.18972 1.21318 0.98408 0.84792 0.92771 0.90011 0.90730 0.91438 0.74616 0.84799 0.90585 0.88563 0.88007 0.90437 0.90466 0.90944 0.86604 0.90638 0.90224 0.86688 0.91555 0.90737 0.96960 0.98052 0.94645 0.94650 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.37 71.98 0.67 -2.25 16 2 C 0.13 3.10 2.86 44.25 0.13 3.23 16 3 H 0.10 2.65 7.57 -2.39 -0.02 2.63 16 4 N -0.71 -15.08 4.95 -446.10 -2.21 -17.28 16 5 C 0.52 11.93 7.32 87.65 0.64 12.57 16 6 O -0.58 -18.06 15.57 -3.02 -0.05 -18.11 16 7 C -0.14 -2.08 4.14 -11.01 -0.05 -2.13 16 8 C -0.12 -1.30 7.64 31.18 0.24 -1.06 16 9 C -0.13 -1.27 8.09 31.18 0.25 -1.02 16 10 C -0.13 -1.94 7.40 31.12 0.23 -1.71 16 11 C 0.54 14.31 7.47 87.66 0.65 14.96 16 12 O -0.57 -17.75 16.61 -3.03 -0.05 -17.80 16 13 N -0.64 -15.69 3.65 -859.84 -3.14 -18.83 16 14 C 0.12 3.03 6.08 83.76 0.51 3.54 16 15 C -0.10 -2.91 1.06 -52.63 -0.06 -2.96 16 16 C 0.13 3.01 8.02 83.66 0.67 3.68 16 17 C -0.10 -3.60 6.40 31.33 0.20 -3.40 16 18 C 0.19 8.97 5.40 86.81 0.47 9.44 16 19 N -0.63 -29.85 3.41 -693.43 -2.36 -32.22 16 20 C -0.23 -12.38 10.26 84.04 0.86 -11.52 16 21 H 0.09 4.38 7.84 -2.91 -0.02 4.36 16 22 C -0.07 -3.80 5.48 84.86 0.46 -3.33 16 23 N -0.95 -56.75 10.35 21.65 0.22 -56.52 16 24 Si 0.97 44.84 29.56 68.60 2.03 46.86 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 C 0.15 5.27 6.70 86.22 0.58 5.84 16 29 H 0.08 1.50 6.28 -2.39 -0.02 1.48 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.42 7.75 7.79 -92.70 -0.72 7.03 16 33 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 0.99 8.09 -2.39 -0.02 0.98 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.45 7.45 -2.39 -0.02 1.44 16 40 H 0.12 2.36 7.98 -2.39 -0.02 2.35 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 43 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.01 0.66 7.30 -2.39 -0.02 0.64 16 47 H 0.00 0.07 7.60 -2.39 -0.02 0.05 16 48 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.06 1.92 8.00 -2.38 -0.02 1.90 16 Total: -1.00 -72.43 399.10 1.13 -71.31 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.21 Total: 18.72 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.47 Total: 23.88 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -7.48 Total: -124.86 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.10 Total: -35.91 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -72.43 1.13 -71.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148923048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.274 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds