Wall clock time and date at job start Tue Mar 31 2020 19:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46660 * 2 1 4 4 C 1.46901 * 111.00130 * 199.02570 * 3 2 1 5 5 C 1.50703 * 109.47247 * 66.04474 * 4 3 2 6 6 H 1.08003 * 119.99557 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00299 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99627 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99949 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47312 * 59.99898 * 9 7 5 11 11 H 1.48498 * 109.46596 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46779 * 299.99556 * 9 7 5 13 13 C 1.39183 * 110.99950 * 75.07084 * 3 2 1 14 14 N 1.32303 * 119.74359 * 59.25318 * 13 3 2 15 15 C 1.32007 * 121.69013 * 180.33706 * 14 13 3 16 16 C 1.50708 * 119.50509 * 179.67994 * 15 14 13 17 17 O 1.42898 * 109.46989 * 179.97438 * 16 15 14 18 18 C 1.38038 * 120.99270 * 359.64891 * 15 14 13 19 19 C 1.38797 * 119.38793 * 0.03326 * 18 15 14 20 20 C 1.38881 * 118.44434 * 359.97438 * 19 18 15 21 21 N 1.40141 * 120.51329 * 180.02562 * 20 19 18 22 22 C 1.34778 * 120.00386 * 335.42544 * 21 20 19 23 23 O 1.21296 * 119.99768 * 354.39984 * 22 21 20 24 24 C 1.50701 * 120.00138 * 174.67568 * 22 21 20 25 25 C 1.52996 * 109.47151 * 184.71911 * 24 22 21 26 26 C 1.53002 * 109.46968 * 304.72115 * 24 22 21 27 27 C 1.53001 * 109.46997 * 64.72089 * 24 22 21 28 28 H 1.09006 * 109.46865 * 184.98398 * 1 2 3 29 29 H 1.09000 * 109.47284 * 304.97707 * 1 2 3 30 30 H 1.09001 * 109.47583 * 64.98497 * 1 2 3 31 31 H 1.08999 * 109.46936 * 240.00497 * 2 1 3 32 32 H 1.08997 * 109.47858 * 120.00041 * 2 1 3 33 33 H 1.08996 * 109.47487 * 186.04582 * 4 3 2 34 34 H 1.09000 * 109.46985 * 306.05104 * 4 3 2 35 35 H 0.97003 * 119.99337 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46509 * 299.97717 * 16 15 14 37 37 H 1.08994 * 109.46850 * 59.97532 * 16 15 14 38 38 H 0.96705 * 113.99543 * 179.97438 * 17 16 15 39 39 H 1.08005 * 120.30649 * 180.02562 * 18 15 14 40 40 H 1.07999 * 120.78320 * 179.97438 * 19 18 15 41 41 H 0.97003 * 119.99819 * 155.42065 * 21 20 19 42 42 H 1.09009 * 109.46998 * 59.99852 * 25 24 22 43 43 H 1.09000 * 109.47389 * 180.02562 * 25 24 22 44 44 H 1.08997 * 109.47424 * 300.00483 * 25 24 22 45 45 H 1.08998 * 109.47120 * 60.00056 * 26 24 22 46 46 H 1.09000 * 109.46754 * 180.02562 * 26 24 22 47 47 H 1.08995 * 109.46832 * 299.99925 * 26 24 22 48 48 H 1.08997 * 109.47195 * 64.98539 * 27 24 22 49 49 H 1.08997 * 109.46830 * 184.98516 * 27 24 22 50 50 H 1.09000 * 109.47170 * 304.98174 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4174 1.4494 -0.4471 5 6 3.5012 1.0395 -1.8949 6 1 2.6054 0.7597 -2.4295 7 6 4.7212 1.0217 -2.5369 8 7 5.8119 1.3620 -1.8857 9 14 4.8248 0.5144 -4.3317 10 1 3.9997 1.4346 -5.1547 11 1 6.2379 0.5793 -4.7835 12 1 4.3192 -0.8736 -4.4836 13 6 1.8702 1.9669 1.2555 14 7 2.4653 1.4245 2.3053 15 6 2.3443 1.9404 3.5144 16 6 3.0379 1.2779 4.6768 17 8 2.7649 2.0090 5.8739 18 6 1.5926 3.0779 3.7299 19 6 0.9547 3.6860 2.6576 20 6 1.0984 3.1226 1.3964 21 7 0.4738 3.7012 0.2833 22 6 -0.6257 4.4632 0.4478 23 8 -1.1339 4.5659 1.5443 24 6 -1.2272 5.1828 -0.7318 25 6 -2.3850 6.0627 -0.2563 26 6 -0.1605 6.0573 -1.3939 27 6 -1.7469 4.1588 -1.7430 28 1 -0.3633 -1.0239 0.0893 29 1 -0.3634 0.5891 0.8420 30 1 -0.3634 0.4345 -0.9312 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.7880 2.4684 -0.3360 34 1 4.0235 0.7744 0.1572 35 1 6.6702 1.3499 -2.3375 36 1 2.6728 0.2565 4.7835 37 1 4.1129 1.2626 4.4976 38 1 3.1804 1.6382 6.6645 39 1 1.5014 3.4908 4.7237 40 1 0.3606 4.5765 2.8006 41 1 0.8328 3.5533 -0.6057 42 1 -2.0148 6.7922 0.4642 43 1 -2.8204 6.5828 -1.1095 44 1 -3.1449 5.4397 0.2155 45 1 0.6643 5.4304 -1.7327 46 1 -0.5957 6.5781 -2.2468 47 1 0.2096 6.7867 -0.6735 48 1 -2.5676 3.5948 -1.2998 49 1 -2.1012 4.6762 -2.6345 50 1 -0.9419 3.4761 -2.0150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:26 Heat of formation + Delta-G solvation = -70.676550 kcal Electronic energy + Delta-G solvation = -30637.993933 eV Core-core repulsion = 26664.308528 eV Total energy + Delta-G solvation = -3973.685405 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25065 -40.88501 -38.61729 -37.44462 -36.69765 -36.08175 -34.77700 -32.80638 -31.98678 -31.13917 -28.47406 -28.23161 -28.14698 -27.26757 -24.83459 -24.44368 -24.28269 -22.62253 -21.80027 -20.45542 -19.01353 -18.53016 -18.21288 -17.74244 -17.48950 -16.97654 -16.74308 -16.33240 -16.06962 -15.93137 -15.73467 -15.55841 -14.93026 -14.79911 -14.56727 -14.45640 -14.34039 -14.10654 -13.98015 -13.60469 -13.28753 -13.05948 -12.98209 -12.86640 -12.84650 -12.72855 -12.61625 -12.60165 -12.38227 -12.08487 -12.00391 -11.90674 -11.88008 -11.85336 -11.46389 -11.11570 -11.03812 -10.63926 -10.58666 -10.28218 -9.48518 -9.03233 -8.18951 -6.30266 -0.03958 0.21642 1.45275 1.47920 1.53071 1.55688 1.97966 2.40412 2.68804 2.72320 3.03735 3.15173 3.46179 3.80164 3.84093 3.91305 3.93412 4.04535 4.12866 4.17128 4.31294 4.33784 4.48053 4.49942 4.58243 4.68786 4.71754 4.73875 4.83795 4.88319 4.94007 4.96169 4.96926 4.98892 5.03987 5.05997 5.14986 5.20278 5.20915 5.26302 5.32732 5.36551 5.38594 5.59763 5.71699 6.01758 6.08837 6.36565 6.62062 6.83608 6.87653 6.93786 7.03229 7.39432 8.92368 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007219 B = 0.005283 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.720298 B = 5298.841992 C = 8055.744558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.062 3.938 3 N -0.479 5.479 4 C 0.226 3.774 5 C -0.520 4.520 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.268 3.732 14 N -0.511 5.511 15 C 0.090 3.910 16 C 0.143 3.857 17 O -0.576 6.576 18 C -0.136 4.136 19 C -0.098 4.098 20 C 0.116 3.884 21 N -0.642 5.642 22 C 0.518 3.482 23 O -0.556 6.556 24 C -0.077 4.077 25 C -0.123 4.123 26 C -0.143 4.143 27 C -0.141 4.141 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.026 0.974 33 H -0.007 1.007 34 H -0.032 1.032 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.424 0.576 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.095 0.905 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 5.607 5.545 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.065 4.065 3 N -0.203 5.203 4 C 0.101 3.899 5 C -0.558 4.558 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.575 5.575 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.215 1.215 12 H -0.192 1.192 13 C 0.036 3.964 14 N -0.224 5.224 15 C -0.050 4.050 16 C 0.065 3.935 17 O -0.385 6.385 18 C -0.156 4.156 19 C -0.126 4.126 20 C 0.016 3.984 21 N -0.285 5.285 22 C 0.308 3.692 23 O -0.434 6.434 24 C -0.080 4.080 25 C -0.180 4.180 26 C -0.201 4.201 27 C -0.199 4.199 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.011 0.989 34 H -0.014 1.014 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.259 0.741 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.263 0.737 42 H 0.071 0.929 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.114 0.886 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.632 5.622 5.380 15.697 hybrid contribution 1.351 -0.524 0.061 1.451 sum -12.280 5.099 5.441 14.367 Atomic orbital electron populations 1.21621 0.93685 1.01740 1.01306 1.22022 0.96134 0.87423 1.00912 1.60372 1.22997 1.19654 1.17238 1.19270 0.81565 0.94053 0.95011 1.21350 0.93828 1.45095 0.95563 0.90739 1.25910 0.95076 0.95176 1.03142 1.70121 0.99182 1.49330 1.38843 0.85409 0.76911 0.79238 0.78901 1.18674 1.21496 1.19236 1.19923 0.95253 0.91799 0.89467 1.67333 1.21006 1.34217 0.99867 1.21155 0.97279 0.94650 0.91916 1.20381 0.97850 0.93560 0.81742 1.86319 1.77590 1.56543 1.18096 1.21911 0.96955 0.96148 1.00575 1.21865 0.99287 1.00819 0.90641 1.18535 0.97174 0.93323 0.89331 1.43509 1.27573 1.47948 1.09498 1.21573 0.78448 0.77761 0.91403 1.90605 1.61374 1.63222 1.28248 1.20875 0.97744 0.96817 0.92608 1.21665 0.95856 0.98631 1.01856 1.21936 0.97352 0.99255 1.01522 1.21914 1.01460 0.97911 0.98580 0.90654 0.95120 0.91597 0.90256 0.95581 0.98899 1.01418 0.92774 0.90522 0.91323 0.74052 0.82198 0.82508 0.73711 0.92852 0.89118 0.92843 0.92464 0.88525 0.92459 0.92297 0.88613 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 10.07 71.98 0.72 -3.33 16 2 C 0.06 2.48 5.49 86.30 0.47 2.96 16 3 N -0.48 -20.88 3.77 -705.51 -2.66 -23.55 16 4 C 0.23 12.06 4.53 85.56 0.39 12.44 16 5 C -0.52 -28.03 8.24 25.60 0.21 -27.82 16 6 H 0.07 3.80 7.30 -2.91 -0.02 3.78 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 9 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.27 11.21 4.55 133.17 0.61 11.81 16 14 N -0.51 -21.27 9.36 -180.78 -1.69 -22.97 16 15 C 0.09 3.16 6.78 42.49 0.29 3.44 16 16 C 0.14 3.78 7.59 71.24 0.54 4.32 16 17 O -0.58 -12.23 12.09 -148.98 -1.80 -14.03 16 18 C -0.14 -4.50 9.40 22.36 0.21 -4.29 16 19 C -0.10 -3.44 8.83 22.56 0.20 -3.24 16 20 C 0.12 4.37 6.48 38.32 0.25 4.62 16 21 N -0.64 -20.88 5.03 -302.70 -1.52 -22.40 16 22 C 0.52 15.19 6.30 87.66 0.55 15.74 16 23 O -0.56 -19.01 13.19 -3.08 -0.04 -19.05 16 24 C -0.08 -1.62 0.88 -52.93 -0.05 -1.67 16 25 C -0.12 -2.26 7.78 71.98 0.56 -1.70 16 26 C -0.14 -2.66 8.33 71.98 0.60 -2.06 16 27 C -0.14 -2.58 8.44 71.98 0.61 -1.98 16 28 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 29 H 0.03 1.04 7.58 -2.39 -0.02 1.02 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 3.35 6.58 -2.39 -0.02 3.33 16 32 H 0.03 1.09 7.43 -2.39 -0.02 1.08 16 33 H -0.01 -0.42 8.06 -2.39 -0.02 -0.44 16 34 H -0.03 -1.94 8.12 -2.39 -0.02 -1.96 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.41 4.09 9.12 -74.05 -0.68 3.42 16 39 H 0.16 4.60 6.98 -2.91 -0.02 4.58 16 40 H 0.16 5.35 5.89 -2.91 -0.02 5.33 16 41 H 0.42 13.74 7.11 -92.71 -0.66 13.08 16 42 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 1.09 8.05 -2.39 -0.02 1.07 16 45 H 0.06 1.19 7.42 -2.39 -0.02 1.17 16 46 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 1.20 7.61 -2.39 -0.02 1.18 16 Total: -1.00 -71.07 403.68 0.83 -70.24 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.38 Total: 32.62 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.62 Total: 10.01 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -5.59 Total: -124.22 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.84 Total: -33.09 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -71.07 0.83 -70.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.438 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds