Wall clock time and date at job start Tue Mar 31 2020 18:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46899 * 2 1 4 4 O 1.42897 * 109.47531 * 239.99855 * 2 1 3 5 5 C 1.35919 * 116.99821 * 84.89800 * 4 2 1 6 6 C 1.39144 * 120.47179 * 354.50590 * 5 4 2 7 7 C 1.38533 * 118.36956 * 180.02562 * 6 5 4 8 8 C 1.38255 * 119.22283 * 359.97438 * 7 6 5 9 9 N 1.31846 * 120.88922 * 0.02562 * 8 7 6 10 10 C 1.31844 * 121.77580 * 359.70335 * 9 8 7 11 11 C 1.50707 * 109.46991 * 119.99639 * 2 1 3 12 12 O 1.21279 * 119.99879 * 115.00310 * 11 2 1 13 13 N 1.34770 * 119.99837 * 295.00088 * 11 2 1 14 14 C 1.46503 * 119.99635 * 179.97438 * 13 11 2 15 15 C 1.53005 * 109.46907 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.46971 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.47220 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47220 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.46993 * 179.97438 * 18 17 16 20 20 N 1.46503 * 109.46930 * 179.97438 * 19 18 17 21 21 C 1.36946 * 119.99790 * 179.97438 * 20 19 18 22 22 H 1.07993 * 120.00078 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99743 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00208 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47328 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47317 * 120.00213 * 25 23 21 28 28 H 1.48497 * 109.47209 * 239.99962 * 25 23 21 29 29 H 1.08999 * 109.47489 * 300.00092 * 1 2 3 30 30 H 1.09000 * 109.46899 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46807 * 60.00533 * 1 2 3 32 32 H 1.07996 * 120.81226 * 359.97438 * 6 5 4 33 33 H 1.08001 * 120.38905 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.55741 * 179.97438 * 8 7 6 35 35 H 1.08004 * 119.65914 * 180.29167 * 10 9 8 36 36 H 0.96999 * 120.00352 * 0.02562 * 13 11 2 37 37 H 1.09002 * 109.47110 * 300.00156 * 14 13 11 38 38 H 1.08999 * 109.47323 * 60.00567 * 14 13 11 39 39 H 1.09002 * 109.47011 * 299.99786 * 15 14 13 40 40 H 1.08991 * 109.47265 * 60.00171 * 15 14 13 41 41 H 1.09002 * 109.46877 * 299.99621 * 16 15 14 42 42 H 1.09004 * 109.47244 * 59.99601 * 16 15 14 43 43 H 1.09002 * 109.46703 * 299.99503 * 17 16 15 44 44 H 1.08997 * 109.47768 * 59.99768 * 17 16 15 45 45 H 1.09002 * 109.46877 * 299.99396 * 18 17 16 46 46 H 1.08991 * 109.47188 * 59.99653 * 18 17 16 47 47 H 1.09004 * 109.47581 * 299.99680 * 19 18 17 48 48 H 1.09004 * 109.47380 * 59.99771 * 19 18 17 49 49 H 0.96992 * 120.00426 * 0.02562 * 20 19 18 50 50 H 0.96997 * 120.00097 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.1106 0.0622 -2.3047 6 6 1.6568 1.3771 -2.3388 7 6 1.7840 2.0869 -3.5217 8 6 2.3534 1.4708 -4.6207 9 7 2.7735 0.2228 -4.5549 10 6 2.6756 -0.4853 -3.4471 11 6 2.0324 -0.7104 1.2306 12 8 2.6530 -1.7466 1.1217 13 7 1.7919 -0.1941 2.4520 14 6 2.2797 -0.8849 3.6482 15 6 1.8745 -0.0949 4.8943 16 6 2.3845 -0.8161 6.1436 17 6 1.9788 -0.0266 7.3897 18 6 2.4882 -0.7481 8.6390 19 6 2.0830 0.0419 9.8850 20 7 2.5703 -0.6493 11.0813 21 6 2.3259 -0.1248 12.3225 22 1 1.7743 0.7986 12.4194 23 6 2.7881 -0.7794 13.4559 24 7 3.4617 -1.9040 13.3377 25 14 2.4553 -0.0636 15.1488 26 1 1.6843 1.1980 15.0101 27 1 1.6718 -1.0362 15.9523 28 1 3.7448 0.2162 15.8302 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 1.2156 1.8329 -1.4648 33 1 1.4430 3.1097 -3.5845 34 1 2.4548 2.0190 -5.5457 35 1 3.0351 -1.5036 -3.4301 36 1 1.2952 0.6345 2.5391 37 1 1.8447 -1.8834 3.6940 38 1 3.3660 -0.9635 3.6049 39 1 2.3092 0.9036 4.8488 40 1 0.7882 -0.0167 4.9376 41 1 1.9501 -1.8148 6.1894 42 1 3.4709 -0.8941 6.1001 43 1 2.4128 0.9723 7.3441 44 1 0.8924 0.0510 7.4330 45 1 2.0538 -1.7468 8.6843 46 1 3.5745 -0.8260 8.5960 47 1 2.5177 1.0404 9.8396 48 1 0.9967 0.1202 9.9283 49 1 3.0667 -1.4780 10.9942 50 1 3.7850 -2.3612 14.1297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179553140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:37 Heat of formation + Delta-G solvation = -72.936764 kcal Electronic energy + Delta-G solvation = -26601.312164 eV Core-core repulsion = 22627.528749 eV Total energy + Delta-G solvation = -3973.783415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93923 -40.81860 -39.10741 -37.89044 -36.76645 -35.40212 -33.87033 -33.24040 -33.01066 -31.45990 -30.92134 -28.35221 -26.24353 -25.51581 -24.72149 -24.05068 -23.32340 -22.24074 -21.99859 -21.22988 -19.52627 -19.13111 -18.65531 -17.76290 -17.28529 -17.17073 -16.84577 -16.73510 -16.60962 -16.11971 -15.46680 -15.43798 -15.34876 -15.21789 -15.02607 -14.77888 -14.47416 -14.02687 -13.99481 -13.90944 -13.43855 -13.34790 -13.12938 -13.04448 -12.96820 -12.68861 -12.63996 -12.39196 -12.31642 -12.11768 -12.00707 -11.81039 -11.79264 -11.47023 -11.33541 -10.98442 -10.94695 -10.73802 -10.58824 -10.21778 -9.49227 -9.01673 -7.96861 -5.26424 0.13014 0.22114 1.40482 1.45098 1.46792 1.48128 1.58411 2.44721 2.55478 2.78314 3.37039 3.40892 3.56529 3.60948 3.72733 3.74821 3.79628 3.89493 4.01659 4.02556 4.13308 4.25041 4.28943 4.31006 4.34842 4.58135 4.59480 4.61173 4.64656 4.76441 4.78583 4.85407 4.98139 4.98298 5.00195 5.06099 5.07608 5.11848 5.16062 5.29521 5.30029 5.38963 5.44013 5.48209 5.54480 5.57534 6.11499 6.26133 6.43557 6.95834 7.09688 7.31467 8.08808 8.31216 9.27300 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.044210 B = 0.001151 C = 0.001139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.187234 B =24325.525066 C =24585.659840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.065 3.935 3 H 0.130 0.870 4 O -0.308 6.308 5 C 0.068 3.932 6 C -0.165 4.165 7 C -0.121 4.121 8 C 0.046 3.954 9 N -0.477 5.477 10 C 0.050 3.950 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.706 5.706 14 C 0.120 3.880 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.103 4.103 18 C -0.118 4.118 19 C 0.148 3.852 20 N -0.752 5.752 21 C -0.249 4.249 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.264 1.264 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.182 0.818 35 H 0.156 0.844 36 H 0.421 0.579 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 12.888 -37.770 40.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 H 0.148 0.852 4 O -0.220 6.220 5 C 0.021 3.979 6 C -0.191 4.191 7 C -0.140 4.140 8 C -0.111 4.111 9 N -0.186 5.186 10 C -0.108 4.108 11 C 0.297 3.703 12 O -0.452 6.452 13 N -0.360 5.360 14 C -0.004 4.004 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.156 4.156 19 C 0.022 3.978 20 N -0.395 5.395 21 C -0.381 4.381 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.188 1.188 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.189 0.811 33 H 0.194 0.806 34 H 0.199 0.801 35 H 0.173 0.827 36 H 0.259 0.741 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.071 11.699 -38.425 40.969 hybrid contribution -0.162 0.145 1.984 1.996 sum -8.233 11.844 -36.441 39.192 Atomic orbital electron populations 1.22374 0.90177 1.04266 1.06088 1.22454 0.97356 0.97563 0.82027 0.85224 1.86218 1.81425 1.37965 1.16359 1.20307 0.97623 0.92379 0.87633 1.22152 1.02551 0.92779 1.01613 1.22435 0.97148 1.02549 0.91886 1.23268 0.96597 0.90625 1.00621 1.67741 1.16126 1.08974 1.25769 1.22282 1.00126 1.01309 0.87073 1.20615 0.79289 0.85010 0.85432 1.90757 1.41731 1.25535 1.87175 1.45733 1.57471 1.28364 1.04408 1.21394 0.99092 0.96294 0.83608 1.21692 1.02760 0.99611 0.91306 1.21462 1.01214 0.99317 0.93348 1.21412 1.01399 0.99124 0.92144 1.21651 1.00597 0.99146 0.94211 1.20889 0.96156 0.94779 0.86020 1.42690 1.66785 1.27997 1.01982 1.19736 1.28137 1.05100 0.85116 0.90533 1.25628 1.01399 0.98090 1.01836 1.69834 1.43930 1.19482 1.29043 0.85031 0.77093 0.77801 0.79587 1.18813 1.21899 1.21905 0.87058 0.92291 0.89190 0.81071 0.80648 0.80127 0.82671 0.74084 0.92447 0.92557 0.89640 0.89522 0.92046 0.92095 0.91122 0.91081 0.92827 0.92863 0.96226 0.96207 0.79628 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 9.14 71.98 0.66 -0.18 16 2 C 0.07 0.68 2.64 29.85 0.08 0.75 16 3 H 0.13 0.46 6.36 -2.39 -0.02 0.44 16 4 O -0.31 -5.53 9.35 -73.65 -0.69 -6.22 16 5 C 0.07 1.02 6.62 22.60 0.15 1.17 16 6 C -0.16 -1.28 8.34 22.56 0.19 -1.09 16 7 C -0.12 -0.73 10.11 22.34 0.23 -0.50 16 8 C 0.05 0.48 11.18 84.69 0.95 1.43 16 9 N -0.48 -8.31 10.36 -195.44 -2.02 -10.34 16 10 C 0.05 0.89 11.14 84.80 0.94 1.83 16 11 C 0.51 8.71 7.18 87.66 0.63 9.34 16 12 O -0.57 -16.63 16.51 15.96 0.26 -16.36 16 13 N -0.71 -7.35 5.52 -463.05 -2.55 -9.90 16 14 C 0.12 1.69 5.67 86.38 0.49 2.18 16 15 C -0.12 -1.24 5.33 30.60 0.16 -1.08 16 16 C -0.12 -1.94 5.21 30.59 0.16 -1.78 16 17 C -0.10 -2.14 5.21 30.59 0.16 -1.98 16 18 C -0.12 -3.66 5.33 30.59 0.16 -3.49 16 19 C 0.15 5.91 6.26 86.38 0.54 6.45 16 20 N -0.75 -39.54 5.60 -343.44 -1.92 -41.46 16 21 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 24 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 25 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 26 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 29 H 0.11 -0.12 7.92 -2.39 -0.02 -0.14 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.22 6.92 -2.39 -0.02 0.20 16 32 H 0.17 0.14 5.59 -2.91 -0.02 0.13 16 33 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 34 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.42 0.92 8.25 -92.71 -0.77 0.15 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 50 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -83.16 414.98 1.65 -81.51 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.54 Total: 19.12 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 6.80 Total: -4.42 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -6.22 Total: -122.05 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.43 Total: -22.59 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -83.16 1.65 -81.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179553140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.572 kcal (2) G-P(sol) polarization free energy of solvation -83.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds