Wall clock time and date at job start Tue Mar 31 2020 18:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47333 * 2 1 4 4 O 1.42902 * 109.47159 * 240.00574 * 2 1 3 5 5 C 1.35669 * 117.00561 * 89.99872 * 4 2 1 6 6 C 1.38921 * 119.68945 * 179.97438 * 5 4 2 7 7 C 1.38381 * 119.11179 * 179.74813 * 6 5 4 8 8 C 1.38822 * 118.48584 * 0.53755 * 7 6 5 9 9 C 1.38049 * 119.28823 * 359.45882 * 8 7 6 10 10 N 1.31964 * 120.83777 * 0.27970 * 9 8 7 11 11 C 1.50696 * 109.47506 * 120.00427 * 2 1 3 12 12 O 1.21280 * 120.00865 * 119.99857 * 11 2 1 13 13 N 1.34778 * 119.99558 * 300.00152 * 11 2 1 14 14 C 1.46499 * 119.99886 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.47270 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47378 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47378 * 179.97438 * 16 15 14 18 18 C 1.53007 * 109.47366 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47074 * 179.97438 * 18 17 16 20 20 N 1.46499 * 109.46978 * 179.97438 * 19 18 17 21 21 C 1.36936 * 120.00142 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99398 * 359.97438 * 21 20 19 23 23 C 1.38808 * 120.00332 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99553 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00355 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46863 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47020 * 119.99984 * 25 23 21 28 28 H 1.48501 * 109.47347 * 240.00521 * 25 23 21 29 29 H 1.08995 * 109.47367 * 299.99941 * 1 2 3 30 30 H 1.09001 * 109.47134 * 59.99838 * 1 2 3 31 31 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.43776 * 0.02562 * 6 5 4 33 33 H 1.08003 * 120.75366 * 180.29868 * 7 6 5 34 34 H 1.08002 * 120.35806 * 179.73977 * 8 7 6 35 35 H 1.07995 * 119.58258 * 180.25465 * 9 8 7 36 36 H 0.97006 * 120.00290 * 359.97438 * 13 11 2 37 37 H 1.09004 * 109.47624 * 299.99977 * 14 13 11 38 38 H 1.08999 * 109.47478 * 60.00241 * 14 13 11 39 39 H 1.09002 * 109.47000 * 299.99737 * 15 14 13 40 40 H 1.09003 * 109.47373 * 59.99990 * 15 14 13 41 41 H 1.09004 * 109.47438 * 299.99881 * 16 15 14 42 42 H 1.08999 * 109.47556 * 60.00079 * 16 15 14 43 43 H 1.09002 * 109.47000 * 299.99575 * 17 16 15 44 44 H 1.08991 * 109.47096 * 60.00071 * 17 16 15 45 45 H 1.09002 * 109.46583 * 299.99669 * 18 17 16 46 46 H 1.08994 * 109.47056 * 59.99372 * 18 17 16 47 47 H 1.08998 * 109.47383 * 299.99901 * 19 18 17 48 48 H 1.09000 * 109.46921 * 60.00085 * 19 18 17 49 49 H 0.97006 * 119.99823 * 0.02562 * 20 19 18 50 50 H 0.97006 * 119.99311 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2116 0.0830 -2.2742 6 6 2.6747 -0.5146 -3.4396 7 6 2.8749 0.2674 -4.5636 8 6 2.6143 1.6283 -4.4783 9 6 2.1560 2.1548 -3.2873 10 7 1.9694 1.3825 -2.2336 11 6 2.0323 -0.7105 1.2303 12 8 2.7296 -1.6965 1.1191 13 7 1.7067 -0.2500 2.4545 14 6 2.1946 -0.9410 3.6506 15 6 1.6842 -0.2201 4.8999 16 6 2.1943 -0.9413 6.1491 17 6 1.6843 -0.2201 7.3984 18 6 2.1950 -0.9410 8.6477 19 6 1.6856 -0.2193 9.8969 20 7 2.1740 -0.9099 11.0930 21 6 1.8433 -0.4421 12.3368 22 1 1.2227 0.4362 12.4358 23 6 2.3056 -1.0967 13.4702 24 7 3.0623 -2.1669 13.3493 25 14 1.8551 -0.4582 15.1668 26 1 1.0017 0.7495 15.0305 27 1 1.1119 -1.5076 15.9094 28 1 3.0929 -0.1089 15.9091 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.8714 -1.5761 -3.4693 33 1 3.2296 -0.1704 -5.4850 34 1 2.7643 2.2676 -5.3358 35 1 1.9478 3.2121 -3.2169 36 1 1.1493 0.5388 2.5435 37 1 1.8310 -1.9686 3.6505 38 1 3.2846 -0.9414 3.6508 39 1 2.0476 0.8075 4.9004 40 1 0.5942 -0.2201 4.8996 41 1 1.8313 -1.9692 6.1490 42 1 3.2842 -0.9409 6.1493 43 1 2.0477 0.8076 7.3984 44 1 0.5944 -0.2201 7.3985 45 1 1.8319 -1.9687 8.6479 46 1 3.2849 -0.9406 8.6473 47 1 2.0489 0.8083 9.8965 48 1 0.5956 -0.2194 9.8974 49 1 2.7317 -1.6986 11.0040 50 1 3.3857 -2.6241 14.1414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180077371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:25 Heat of formation + Delta-G solvation = -73.570538 kcal Electronic energy + Delta-G solvation = -26601.518993 eV Core-core repulsion = 22627.708095 eV Total energy + Delta-G solvation = -3973.810897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85372 -40.80996 -38.85789 -37.88511 -36.76677 -35.40675 -33.87058 -33.44519 -32.99796 -31.46192 -30.85727 -28.33152 -26.25575 -25.52470 -24.56529 -24.03763 -23.33393 -22.24232 -22.00567 -21.24705 -19.61488 -19.13121 -18.66246 -17.50842 -17.19147 -16.89492 -16.87162 -16.69087 -16.63747 -16.17864 -15.57052 -15.44134 -15.35413 -15.26525 -15.05333 -14.50179 -14.34006 -14.04558 -13.95037 -13.89995 -13.46059 -13.40403 -13.04823 -12.96808 -12.93416 -12.79963 -12.67831 -12.39608 -12.22484 -12.12019 -12.01027 -11.81560 -11.79533 -11.47346 -11.33958 -10.96191 -10.94734 -10.87351 -10.61195 -10.22382 -9.51344 -9.01736 -7.96849 -5.26416 0.18878 0.30708 1.37765 1.46636 1.48112 1.48137 1.58440 2.42930 2.55497 2.81305 3.26740 3.36983 3.51882 3.71783 3.83525 3.95629 4.01013 4.01884 4.05102 4.11108 4.21843 4.24625 4.29073 4.33244 4.36687 4.58751 4.63063 4.64375 4.67054 4.77824 4.79372 4.84829 4.97625 4.98001 5.05467 5.06871 5.07802 5.15315 5.28829 5.29000 5.29681 5.38865 5.47844 5.51659 5.54140 5.57128 6.14776 6.26140 6.40983 6.83098 7.07376 7.31431 8.08610 8.31311 9.27326 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.044575 B = 0.001155 C = 0.001144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.002477 B =24230.246990 C =24463.762996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.076 3.924 3 H 0.124 0.876 4 O -0.305 6.305 5 C 0.293 3.707 6 C -0.207 4.207 7 C -0.038 4.038 8 C -0.205 4.205 9 C 0.127 3.873 10 N -0.558 5.558 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.706 5.706 14 C 0.120 3.880 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.118 4.118 19 C 0.148 3.852 20 N -0.752 5.752 21 C -0.249 4.249 22 H 0.076 0.924 23 C -0.078 4.078 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.264 1.264 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.188 0.812 36 H 0.419 0.581 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 11.278 -42.348 44.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.016 3.984 3 H 0.141 0.859 4 O -0.212 6.212 5 C 0.115 3.885 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.225 4.225 9 C -0.028 4.028 10 N -0.282 5.282 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.360 5.360 14 C -0.003 4.003 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.156 4.156 19 C 0.022 3.978 20 N -0.394 5.394 21 C -0.381 4.381 22 H 0.094 0.906 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.188 1.188 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.205 0.795 36 H 0.257 0.743 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.333 10.782 -41.476 43.185 hybrid contribution 0.342 -0.445 0.668 0.872 sum -4.991 10.337 -40.808 42.392 Atomic orbital electron populations 1.22152 0.90388 1.03522 1.05269 1.22148 0.97083 0.97654 0.81489 0.85870 1.86342 1.80640 1.35723 1.18512 1.20140 0.93105 0.88125 0.87087 1.21351 1.06694 1.02863 0.91870 1.21854 0.92893 0.93724 0.97835 1.22414 1.03165 0.96315 1.00562 1.23037 0.92184 1.00315 0.87223 1.67223 1.22595 1.04389 1.34015 1.20700 0.79877 0.84253 0.85514 1.90728 1.39296 1.27972 1.87315 1.45770 1.53459 1.32502 1.04308 1.21409 0.98993 0.96439 0.83504 1.21698 1.02281 1.00106 0.91352 1.21454 1.00976 0.99604 0.93202 1.21415 1.01138 0.99400 0.92158 1.21647 1.00367 0.99420 0.94123 1.20883 0.96150 0.94783 0.86024 1.42686 1.61481 1.33508 1.01756 1.19735 1.24913 1.08486 0.84972 0.90565 1.25633 1.01018 0.98463 1.01850 1.69842 1.40994 1.22433 1.29017 0.85024 0.77214 0.77667 0.79566 1.18848 1.21866 1.21868 0.87570 0.90565 0.92160 0.84043 0.81171 0.81266 0.79543 0.74261 0.92290 0.92511 0.89774 0.89583 0.91932 0.92035 0.91178 0.91104 0.92774 0.92817 0.96243 0.96223 0.79612 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.43 71.98 0.68 -1.09 16 2 C 0.08 1.30 2.91 29.84 0.09 1.38 16 3 H 0.12 1.83 6.98 -2.38 -0.02 1.81 16 4 O -0.31 -6.91 9.29 -70.83 -0.66 -7.57 16 5 C 0.29 5.51 7.45 84.79 0.63 6.15 16 6 C -0.21 -3.04 10.04 22.47 0.23 -2.82 16 7 C -0.04 -0.31 10.17 22.44 0.23 -0.08 16 8 C -0.20 -1.27 10.11 22.36 0.23 -1.05 16 9 C 0.13 1.17 11.18 84.63 0.95 2.12 16 10 N -0.56 -8.68 8.65 -308.95 -2.67 -11.35 16 11 C 0.51 10.90 7.23 87.66 0.63 11.53 16 12 O -0.57 -18.29 16.50 16.01 0.26 -18.02 16 13 N -0.71 -10.15 5.45 -463.06 -2.52 -12.67 16 14 C 0.12 1.99 5.67 86.38 0.49 2.48 16 15 C -0.12 -1.51 5.33 30.59 0.16 -1.34 16 16 C -0.11 -2.09 5.21 30.59 0.16 -1.93 16 17 C -0.10 -2.28 5.22 30.60 0.16 -2.12 16 18 C -0.12 -3.75 5.33 30.60 0.16 -3.59 16 19 C 0.15 6.04 6.26 86.38 0.54 6.58 16 20 N -0.75 -40.03 5.60 -343.46 -1.92 -41.95 16 21 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 22 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 24 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 25 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 26 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 29 H 0.11 0.56 7.56 -2.39 -0.02 0.55 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 34 H 0.17 -0.06 8.06 -2.91 -0.02 -0.08 16 35 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.42 2.94 7.89 -92.70 -0.73 2.21 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.37 21.04 7.67 -92.70 -0.71 20.33 16 50 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -81.31 418.92 0.92 -80.39 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.52 Total: 24.56 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.64 Total: -1.46 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -6.84 Total: -126.76 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.39 Total: -25.59 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -81.31 0.92 -80.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180077371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.821 kcal (2) G-P(sol) polarization free energy of solvation -81.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds