Wall clock time and date at job start Tue Mar 31 2020 18:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42895 * 109.47036 * 120.00086 * 2 1 3 5 5 C 1.35681 * 116.99911 * 269.99420 * 4 2 1 6 6 C 1.38916 * 119.68504 * 179.73000 * 5 4 2 7 7 C 1.38379 * 119.11288 * 179.75786 * 6 5 4 8 8 C 1.38829 * 118.48350 * 0.50811 * 7 6 5 9 9 C 1.38051 * 119.29110 * 359.73011 * 8 7 6 10 10 N 1.31973 * 120.83263 * 0.02731 * 9 8 7 11 11 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 12 12 O 1.21284 * 119.99963 * 245.00276 * 11 2 1 13 13 N 1.34776 * 120.00324 * 64.99587 * 11 2 1 14 14 C 1.46500 * 120.00263 * 179.97438 * 13 11 2 15 15 C 1.53000 * 109.46872 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47013 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47013 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46672 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.46986 * 179.97438 * 18 17 16 20 20 N 1.46500 * 109.47186 * 179.97438 * 19 18 17 21 21 C 1.36937 * 119.99912 * 180.02562 * 20 19 18 22 22 H 1.08001 * 120.00103 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99705 * 180.02562 * 21 20 19 24 24 N 1.31610 * 120.00096 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99603 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47173 * 89.99950 * 25 23 21 27 27 H 1.48501 * 109.47299 * 209.99730 * 25 23 21 28 28 H 1.48503 * 109.47572 * 330.00144 * 25 23 21 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.08003 * 120.44797 * 0.02562 * 6 5 4 33 33 H 1.07996 * 120.76024 * 180.23901 * 7 6 5 34 34 H 1.08002 * 120.35862 * 179.70828 * 8 7 6 35 35 H 1.07996 * 119.58979 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99534 * 0.02562 * 13 11 2 37 37 H 1.09007 * 109.47056 * 300.00374 * 14 13 11 38 38 H 1.08988 * 109.46935 * 60.00377 * 14 13 11 39 39 H 1.08997 * 109.47159 * 299.99779 * 15 14 13 40 40 H 1.09005 * 109.47284 * 60.00263 * 15 14 13 41 41 H 1.09007 * 109.47019 * 299.99862 * 16 15 14 42 42 H 1.09001 * 109.47114 * 59.99610 * 16 15 14 43 43 H 1.08997 * 109.47159 * 299.99820 * 17 16 15 44 44 H 1.08992 * 109.47287 * 60.00648 * 17 16 15 45 45 H 1.09006 * 109.47580 * 299.99698 * 18 17 16 46 46 H 1.08993 * 109.47565 * 59.99956 * 18 17 16 47 47 H 1.08997 * 109.47105 * 299.99814 * 19 18 17 48 48 H 1.09005 * 109.47024 * 60.00106 * 19 18 17 49 49 H 0.97001 * 120.00016 * 359.97438 * 20 19 18 50 50 H 0.97010 * 119.99837 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2118 0.0830 2.2741 6 6 2.6690 -0.5157 3.4413 7 6 2.8792 0.2679 4.5622 8 6 2.6133 1.6279 4.4786 9 6 2.1559 2.1547 3.2874 10 7 1.9696 1.3825 2.2335 11 6 2.0323 -0.7105 -1.2304 12 8 2.6529 -1.7468 -1.1214 13 7 1.7918 -0.1944 -2.4520 14 6 2.2806 -0.8848 -3.6482 15 6 1.8761 -0.0944 -4.8942 16 6 2.3871 -0.8150 -6.1434 17 6 1.9832 -0.0243 -7.3894 18 6 2.4937 -0.7454 -8.6386 19 6 2.0893 0.0450 -9.8847 20 7 2.5785 -0.6451 -11.0808 21 6 2.3351 -0.1201 -12.3219 22 1 1.7821 0.8025 -12.4189 23 6 2.7983 -0.7742 -13.4552 24 7 3.4718 -1.8987 -13.3369 25 14 2.4657 -0.0584 -15.1482 26 1 3.5738 0.8553 -15.5258 27 1 2.3712 -1.1586 -16.1411 28 1 1.1876 0.6974 -15.1238 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.8619 -1.5780 3.4723 33 1 3.2379 -0.1691 5.4824 34 1 2.7622 2.2670 5.3365 35 1 1.9471 3.2120 3.2171 36 1 1.2957 0.6347 -2.5392 37 1 3.3670 -0.9626 -3.6043 38 1 1.8464 -1.8834 -3.6941 39 1 0.7899 -0.0163 -4.9382 40 1 2.3107 0.9042 -4.8480 41 1 3.4735 -0.8928 -6.0992 42 1 1.9530 -1.8138 -6.1898 43 1 0.8970 0.0538 -7.4338 44 1 2.4178 0.9741 -7.3428 45 1 3.5800 -0.8239 -8.5944 46 1 2.0589 -1.7437 -8.6851 47 1 1.0030 0.1231 -9.9287 48 1 2.5238 1.0436 -9.8385 49 1 3.0756 -1.4735 -10.9936 50 1 3.7958 -2.3557 -14.1289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180077372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:29 Heat of formation + Delta-G solvation = -48.657260 kcal Electronic energy + Delta-G solvation = -26601.106846 eV Core-core repulsion = 22628.376269 eV Total energy + Delta-G solvation = -3972.730577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28822 -40.10715 -38.25349 -36.79888 -35.42160 -34.06039 -33.06313 -32.78022 -31.72249 -30.56247 -29.82977 -27.07130 -25.40316 -24.32714 -23.93697 -23.17704 -22.21459 -21.34237 -20.65510 -20.47897 -19.05622 -18.03187 -16.98130 -16.90668 -16.51141 -16.34315 -16.14423 -16.04363 -15.27473 -15.04351 -14.73023 -14.53985 -14.34468 -13.89834 -13.70351 -13.59613 -13.47364 -13.39617 -12.96568 -12.82693 -12.72779 -12.50997 -12.36214 -12.29804 -11.77834 -11.61045 -11.37153 -11.18690 -10.91587 -10.73213 -10.71245 -10.48996 -10.42590 -10.25249 -10.19004 -10.08011 -9.93630 -9.62738 -9.45639 -9.03216 -8.83240 -6.87551 -5.72857 -3.01227 0.62443 0.72987 2.06759 2.19856 3.05276 3.25676 3.45783 3.50436 3.52559 3.72056 4.16618 4.33338 4.39329 4.49625 4.52245 4.53180 4.64586 4.65942 4.69027 4.74182 4.94345 5.05180 5.16550 5.18537 5.22693 5.36089 5.38906 5.42360 5.54603 5.56457 5.63934 5.66805 5.69390 5.72040 5.87175 5.93695 5.96131 6.05370 6.13932 6.34601 6.35245 6.42813 6.49796 6.68232 6.93122 6.97154 7.04922 7.29601 7.73018 7.79323 8.46526 9.57178 10.16944 10.51446 11.50321 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.042361 B = 0.001159 C = 0.001148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.819506 B =24155.925012 C =24379.246893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.276 6.276 5 C 0.323 3.677 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.213 4.213 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.514 3.486 12 O -0.519 6.519 13 N -0.725 5.725 14 C 0.118 3.882 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.127 4.127 19 C 0.152 3.848 20 N -0.735 5.735 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.402 0.598 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 8.054 40.836 41.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.182 6.182 5 C 0.144 3.856 6 C -0.208 4.208 7 C -0.065 4.065 8 C -0.234 4.234 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.298 3.702 12 O -0.394 6.394 13 N -0.378 5.378 14 C -0.005 4.005 15 C -0.168 4.168 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.165 4.165 19 C 0.024 3.976 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.102 7.444 39.937 40.944 hybrid contribution 0.035 0.344 -0.317 0.469 sum -5.067 7.789 39.620 40.695 Atomic orbital electron populations 1.22165 0.92189 1.03828 1.03929 1.22076 0.95885 0.97981 0.82787 0.86778 1.86396 1.79856 1.34333 1.17587 1.19896 0.91286 0.87430 0.87000 1.21123 1.06000 1.02357 0.91348 1.21455 0.93889 0.93442 0.97722 1.22013 1.05077 0.96259 1.00018 1.22442 0.92575 0.99229 0.87306 1.67252 1.21992 1.04713 1.32781 1.20224 0.80112 0.85567 0.84313 1.90760 1.39239 1.22951 1.86430 1.45912 1.58320 1.28089 1.05509 1.21498 0.99899 0.96391 0.82683 1.21834 1.01808 0.99682 0.93520 1.21522 1.01387 0.99460 0.93092 1.21496 1.00925 0.99062 0.93632 1.21733 1.01021 0.99615 0.94114 1.20659 0.96232 0.94495 0.86168 1.42397 1.66623 1.28073 1.00836 1.19262 1.28877 1.05074 0.83856 0.91227 1.24744 1.01049 0.97472 0.97848 1.69664 1.42423 1.17915 1.28347 0.86184 0.77771 0.77826 0.84393 1.21733 1.21749 1.20772 0.90228 0.91101 0.90682 0.83862 0.84008 0.84434 0.82230 0.76377 0.91174 0.91107 0.91170 0.91193 0.91593 0.91573 0.92087 0.92088 0.92083 0.92078 0.96587 0.96606 0.78334 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.49 37.16 0.35 -0.65 16 2 C 0.07 0.62 2.90 -27.88 -0.08 0.53 16 3 H 0.11 0.85 6.98 -51.93 -0.36 0.49 16 4 O -0.28 -2.93 9.30 -38.61 -0.36 -3.29 16 5 C 0.32 2.93 7.45 -17.12 -0.13 2.80 16 6 C -0.19 -1.34 10.04 -39.28 -0.39 -1.74 16 7 C -0.04 -0.19 10.17 -39.31 -0.40 -0.59 16 8 C -0.21 -0.92 10.11 -39.43 -0.40 -1.32 16 9 C 0.14 0.77 11.18 -17.56 -0.20 0.57 16 10 N -0.54 -4.35 8.65 -13.33 -0.12 -4.46 16 11 C 0.51 5.37 7.18 -10.99 -0.08 5.29 16 12 O -0.52 -7.80 16.51 -14.31 -0.24 -8.04 16 13 N -0.72 -5.57 5.52 -60.30 -0.33 -5.90 16 14 C 0.12 1.02 5.67 -4.04 -0.02 1.00 16 15 C -0.13 -1.00 5.33 -26.73 -0.14 -1.14 16 16 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 17 C -0.11 -1.37 5.22 -26.73 -0.14 -1.51 16 18 C -0.13 -2.07 5.33 -26.73 -0.14 -2.21 16 19 C 0.15 3.16 6.26 -4.04 -0.03 3.14 16 20 N -0.74 -19.46 5.60 -59.90 -0.34 -19.80 16 21 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.97 13.06 55.49 0.72 -28.24 16 25 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H 0.08 0.31 7.92 -51.93 -0.41 -0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 33 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 34 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 35 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.40 1.88 8.26 -40.82 -0.34 1.54 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.68 8.14 -51.94 -0.42 0.26 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 50 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 419.72 15.07 6.33 6.33 Total: -1.00 -36.50 419.72 -10.11 -46.62 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.58 Total: 3.81 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.18 Total: -4.78 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.06 Total: -58.41 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.60 Total: -11.33 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -36.50 -10.11 -46.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180077372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.040 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds