Wall clock time and date at job start Tue Mar 31 2020 18:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.42895 * 109.47036 * 120.00086 * 2 1 3 5 5 C 1.35681 * 116.99911 * 269.99420 * 4 2 1 6 6 C 1.38916 * 119.68504 * 179.73000 * 5 4 2 7 7 C 1.38379 * 119.11288 * 179.75786 * 6 5 4 8 8 C 1.38829 * 118.48350 * 0.50811 * 7 6 5 9 9 C 1.38051 * 119.29110 * 359.73011 * 8 7 6 10 10 N 1.31973 * 120.83263 * 0.02731 * 9 8 7 11 11 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 12 12 O 1.21284 * 119.99963 * 245.00276 * 11 2 1 13 13 N 1.34776 * 120.00324 * 64.99587 * 11 2 1 14 14 C 1.46500 * 120.00263 * 179.97438 * 13 11 2 15 15 C 1.53000 * 109.46872 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47013 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47013 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46672 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.46986 * 179.97438 * 18 17 16 20 20 N 1.46500 * 109.47186 * 179.97438 * 19 18 17 21 21 C 1.36937 * 119.99912 * 180.02562 * 20 19 18 22 22 H 1.08001 * 120.00103 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99705 * 180.02562 * 21 20 19 24 24 N 1.31610 * 120.00096 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99603 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47173 * 89.99950 * 25 23 21 27 27 H 1.48501 * 109.47299 * 209.99730 * 25 23 21 28 28 H 1.48503 * 109.47572 * 330.00144 * 25 23 21 29 29 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 30 30 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 32 32 H 1.08003 * 120.44797 * 0.02562 * 6 5 4 33 33 H 1.07996 * 120.76024 * 180.23901 * 7 6 5 34 34 H 1.08002 * 120.35862 * 179.70828 * 8 7 6 35 35 H 1.07996 * 119.58979 * 179.97438 * 9 8 7 36 36 H 0.97007 * 119.99534 * 0.02562 * 13 11 2 37 37 H 1.09007 * 109.47056 * 300.00374 * 14 13 11 38 38 H 1.08988 * 109.46935 * 60.00377 * 14 13 11 39 39 H 1.08997 * 109.47159 * 299.99779 * 15 14 13 40 40 H 1.09005 * 109.47284 * 60.00263 * 15 14 13 41 41 H 1.09007 * 109.47019 * 299.99862 * 16 15 14 42 42 H 1.09001 * 109.47114 * 59.99610 * 16 15 14 43 43 H 1.08997 * 109.47159 * 299.99820 * 17 16 15 44 44 H 1.08992 * 109.47287 * 60.00648 * 17 16 15 45 45 H 1.09006 * 109.47580 * 299.99698 * 18 17 16 46 46 H 1.08993 * 109.47565 * 59.99956 * 18 17 16 47 47 H 1.08997 * 109.47105 * 299.99814 * 19 18 17 48 48 H 1.09005 * 109.47024 * 60.00106 * 19 18 17 49 49 H 0.97001 * 120.00016 * 359.97438 * 20 19 18 50 50 H 0.97010 * 119.99837 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2118 0.0830 2.2741 6 6 2.6690 -0.5157 3.4413 7 6 2.8792 0.2679 4.5622 8 6 2.6133 1.6279 4.4786 9 6 2.1559 2.1547 3.2874 10 7 1.9696 1.3825 2.2335 11 6 2.0323 -0.7105 -1.2304 12 8 2.6529 -1.7468 -1.1214 13 7 1.7918 -0.1944 -2.4520 14 6 2.2806 -0.8848 -3.6482 15 6 1.8761 -0.0944 -4.8942 16 6 2.3871 -0.8150 -6.1434 17 6 1.9832 -0.0243 -7.3894 18 6 2.4937 -0.7454 -8.6386 19 6 2.0893 0.0450 -9.8847 20 7 2.5785 -0.6451 -11.0808 21 6 2.3351 -0.1201 -12.3219 22 1 1.7821 0.8025 -12.4189 23 6 2.7983 -0.7742 -13.4552 24 7 3.4718 -1.8987 -13.3369 25 14 2.4657 -0.0584 -15.1482 26 1 3.5738 0.8553 -15.5258 27 1 2.3712 -1.1586 -16.1411 28 1 1.1876 0.6974 -15.1238 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.8619 -1.5780 3.4723 33 1 3.2379 -0.1691 5.4824 34 1 2.7622 2.2670 5.3365 35 1 1.9471 3.2120 3.2171 36 1 1.2957 0.6347 -2.5392 37 1 3.3670 -0.9626 -3.6043 38 1 1.8464 -1.8834 -3.6941 39 1 0.7899 -0.0163 -4.9382 40 1 2.3107 0.9042 -4.8480 41 1 3.4735 -0.8928 -6.0992 42 1 1.9530 -1.8138 -6.1898 43 1 0.8970 0.0538 -7.4338 44 1 2.4178 0.9741 -7.3428 45 1 3.5800 -0.8239 -8.5944 46 1 2.0589 -1.7437 -8.6851 47 1 1.0030 0.1231 -9.9287 48 1 2.5238 1.0436 -9.8385 49 1 3.0756 -1.4735 -10.9936 50 1 3.7958 -2.3557 -14.1289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180077372.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:28 Heat of formation + Delta-G solvation = -73.605513 kcal Electronic energy + Delta-G solvation = -26602.188683 eV Core-core repulsion = 22628.376269 eV Total energy + Delta-G solvation = -3973.812414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.85251 -40.80799 -38.85884 -37.88482 -36.76442 -35.39837 -33.85717 -33.44461 -33.00500 -31.46491 -30.86624 -28.34327 -26.26213 -25.51372 -24.56421 -24.03751 -23.32164 -22.24570 -22.00502 -21.25584 -19.60990 -19.12874 -18.65943 -17.50842 -17.18917 -16.88736 -16.87037 -16.70021 -16.63336 -16.17903 -15.56409 -15.44675 -15.35908 -15.26566 -15.05428 -14.50255 -14.34215 -14.04710 -13.94170 -13.90037 -13.45075 -13.40888 -13.04719 -12.95402 -12.94216 -12.79916 -12.66059 -12.40009 -12.23034 -12.16568 -12.00931 -11.81394 -11.79469 -11.47507 -11.33971 -10.95971 -10.93556 -10.87476 -10.61058 -10.22531 -9.51417 -9.01720 -7.96578 -5.26199 0.18875 0.30716 1.39471 1.45719 1.46672 1.49169 1.57777 2.43093 2.55718 2.81332 3.26882 3.37073 3.52096 3.71795 3.83986 3.95195 4.01015 4.01793 4.05139 4.11177 4.21824 4.24560 4.29073 4.33292 4.36685 4.58704 4.63017 4.63933 4.66818 4.77768 4.79384 4.84773 4.97562 4.97943 5.05168 5.06812 5.07543 5.15255 5.28878 5.28941 5.29595 5.38778 5.47646 5.51617 5.54090 5.57064 6.14613 6.26139 6.41065 6.83088 7.07325 7.31538 8.08795 8.31553 9.27374 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.042361 B = 0.001159 C = 0.001148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.819506 B =24155.925012 C =24379.246893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.076 3.924 3 H 0.124 0.876 4 O -0.305 6.305 5 C 0.293 3.707 6 C -0.207 4.207 7 C -0.038 4.038 8 C -0.205 4.205 9 C 0.128 3.872 10 N -0.558 5.558 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.707 5.707 14 C 0.120 3.880 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.118 4.118 19 C 0.148 3.852 20 N -0.752 5.752 21 C -0.251 4.251 22 H 0.076 0.924 23 C -0.077 4.077 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.268 1.268 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.188 0.812 36 H 0.420 0.580 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.020 0.980 48 H 0.019 0.981 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 10.661 42.280 44.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.016 3.984 3 H 0.142 0.858 4 O -0.212 6.212 5 C 0.115 3.885 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.225 4.225 9 C -0.028 4.028 10 N -0.282 5.282 11 C 0.296 3.704 12 O -0.453 6.453 13 N -0.361 5.361 14 C -0.003 4.003 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.156 4.156 19 C 0.022 3.978 20 N -0.394 5.394 21 C -0.383 4.383 22 H 0.094 0.906 23 C -0.269 4.269 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.192 1.192 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.205 0.795 36 H 0.257 0.743 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.037 0.963 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.252 10.126 41.402 43.079 hybrid contribution 0.388 -0.396 -0.658 0.861 sum -5.864 9.730 40.744 42.298 Atomic orbital electron populations 1.22142 0.90431 1.03461 1.05255 1.22143 0.97070 0.97656 0.81485 0.85848 1.86350 1.80626 1.35726 1.18526 1.20142 0.93134 0.88128 0.87076 1.21349 1.06744 1.02813 0.91870 1.21854 0.92881 0.93719 0.97855 1.22417 1.03154 0.96336 1.00544 1.23042 0.92191 1.00311 0.87208 1.67226 1.22509 1.04399 1.34058 1.20700 0.79220 0.84929 0.85503 1.90729 1.41862 1.25431 1.87246 1.45768 1.57454 1.28323 1.04509 1.21408 0.99081 0.96335 0.83511 1.21699 1.02750 0.99591 0.91398 1.21457 1.01234 0.99323 0.93222 1.21413 1.01397 0.99115 0.92184 1.21648 1.00610 0.99151 0.94144 1.20884 0.96133 0.94781 0.86040 1.42675 1.66727 1.28051 1.01969 1.19703 1.28272 1.05173 0.85148 0.90581 1.25632 1.01374 0.98049 1.01850 1.69829 1.43859 1.19426 1.29138 0.85090 0.78128 0.76986 0.79263 1.21222 1.22009 1.19244 0.87621 0.92270 0.90524 0.84050 0.81180 0.81270 0.79531 0.74265 0.92536 0.92256 0.89576 0.89793 0.92041 0.91917 0.91106 0.91182 0.92820 0.92769 0.96225 0.96269 0.79613 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.49 71.98 0.68 -1.13 16 2 C 0.08 1.30 2.90 29.85 0.09 1.39 16 3 H 0.12 1.80 6.98 -2.39 -0.02 1.78 16 4 O -0.31 -6.91 9.30 -71.00 -0.66 -7.57 16 5 C 0.29 5.49 7.45 84.79 0.63 6.12 16 6 C -0.21 -3.03 10.04 22.47 0.23 -2.81 16 7 C -0.04 -0.31 10.17 22.44 0.23 -0.08 16 8 C -0.20 -1.26 10.11 22.37 0.23 -1.04 16 9 C 0.13 1.16 11.18 84.63 0.95 2.11 16 10 N -0.56 -8.62 8.65 -308.94 -2.67 -11.29 16 11 C 0.51 10.90 7.18 87.66 0.63 11.53 16 12 O -0.57 -18.26 16.51 15.95 0.26 -18.00 16 13 N -0.71 -10.18 5.52 -463.06 -2.55 -12.74 16 14 C 0.12 2.00 5.67 86.38 0.49 2.49 16 15 C -0.12 -1.51 5.33 30.60 0.16 -1.35 16 16 C -0.11 -2.09 5.21 30.60 0.16 -1.93 16 17 C -0.10 -2.29 5.22 30.60 0.16 -2.13 16 18 C -0.12 -3.75 5.33 30.60 0.16 -3.59 16 19 C 0.15 6.05 6.26 86.38 0.54 6.59 16 20 N -0.75 -40.06 5.60 -343.44 -1.92 -41.99 16 21 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 22 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 24 N -0.97 -61.05 13.06 21.65 0.28 -60.76 16 25 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H 0.11 0.61 7.92 -2.39 -0.02 0.59 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 34 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 35 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 36 H 0.42 2.97 8.26 -92.70 -0.77 2.21 16 37 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.37 21.06 7.67 -92.71 -0.71 20.34 16 50 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -81.22 419.72 0.85 -80.37 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.55 Total: 24.75 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 6.64 Total: -1.59 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.87 Total: -126.78 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.40 Total: -25.57 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -81.22 0.85 -80.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180077372.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.760 kcal (2) G-P(sol) polarization free energy of solvation -81.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds