Wall clock time and date at job start Tue Mar 31 2020 19:08:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46500 * 109.46872 * 2 1
4 4 C 1.36441 * 124.85488 * 264.98083 * 3 2 1
5 5 C 1.34486 * 108.85844 * 179.73215 * 4 3 2
6 6 C 1.46687 * 106.33439 * 0.43324 * 5 4 3
7 7 C 1.47256 * 126.94787 * 179.82811 * 6 5 4
8 8 O 1.21628 * 120.00646 * 219.28721 * 7 6 5
9 9 N 1.34782 * 119.99468 * 39.28876 * 7 6 5
10 10 C 1.47510 * 118.75593 * 174.01024 * 9 7 6
11 11 C 1.53567 * 110.98925 * 138.32148 * 10 9 7
12 12 C 1.51545 * 109.57689 * 320.05002 * 11 10 9
13 13 O 1.42149 * 108.75352 * 91.39938 * 12 11 10
14 14 C 1.38013 * 119.44336 * 272.77083 * 13 12 11
15 15 H 1.08998 * 109.46819 * 303.42817 * 14 13 12
16 16 C 1.52997 * 109.47316 * 183.43395 * 14 13 12
17 17 N 1.46508 * 109.47279 * 64.99495 * 16 14 13
18 18 C 1.36936 * 119.99722 * 180.02562 * 17 16 14
19 19 H 1.07991 * 120.00250 * 359.97438 * 18 17 16
20 20 C 1.38814 * 119.99384 * 180.02562 * 18 17 16
21 21 N 1.31616 * 120.00237 * 359.97438 * 20 18 17
22 22 Si 1.86805 * 119.99719 * 180.02562 * 20 18 17
23 23 H 1.48493 * 109.47194 * 89.99434 * 22 20 18
24 24 H 1.48499 * 109.46800 * 209.99843 * 22 20 18
25 25 H 1.48501 * 109.46800 * 329.99256 * 22 20 18
26 26 C 1.45086 * 118.73912 * 354.05738 * 9 7 6
27 27 C 1.34660 * 124.84802 * 85.00101 * 3 2 1
28 28 C 1.50704 * 125.80451 * 359.96175 * 27 3 2
29 29 H 1.09005 * 109.47260 * 299.99753 * 1 2 3
30 30 H 1.09000 * 109.47726 * 59.99837 * 1 2 3
31 31 H 1.09000 * 109.47074 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.46946 * 240.00406 * 2 1 3
33 33 H 1.08997 * 109.47322 * 119.99837 * 2 1 3
34 34 H 1.08002 * 125.57076 * 0.02562 * 4 3 2
35 35 H 1.08002 * 126.83494 * 180.26499 * 5 4 3
36 36 H 1.09008 * 109.16838 * 17.95176 * 10 9 7
37 37 H 1.08995 * 109.16942 * 258.69965 * 10 9 7
38 38 H 1.09005 * 109.45588 * 80.08094 * 11 10 9
39 39 H 1.08995 * 109.45678 * 200.03767 * 11 10 9
40 40 H 1.09000 * 109.58966 * 211.18352 * 12 11 10
41 41 H 1.08998 * 109.58484 * 331.47190 * 12 11 10
42 42 H 1.08992 * 109.47678 * 184.99883 * 16 14 13
43 43 H 1.09002 * 109.46897 * 305.00159 * 16 14 13
44 44 H 0.96999 * 119.99535 * 0.02562 * 17 16 14
45 45 H 0.97002 * 119.99903 * 180.02562 * 21 20 18
46 46 H 1.09000 * 109.47999 * 149.31825 * 26 9 7
47 47 H 1.09004 * 109.49107 * 29.33187 * 26 9 7
48 48 H 1.09003 * 109.46557 * 269.99658 * 28 27 3
49 49 H 1.08993 * 109.46738 * 29.99260 * 28 27 3
50 50 H 1.08996 * 109.47225 * 149.99944 * 28 27 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3705 2.0838 -1.1153
5 6 2.7652 3.3154 -0.7467
6 6 2.6534 3.3642 0.7151
7 6 2.9755 4.5041 1.5899
8 8 3.5239 4.3145 2.6589
9 7 2.6624 5.7576 1.2061
10 6 2.8744 6.8648 2.1573
11 6 3.4700 8.0911 1.4503
12 6 4.5064 7.6412 0.4403
13 8 3.8693 7.4563 -0.8169
14 6 3.2914 6.2382 -1.1120
15 1 4.0383 5.4498 -1.0190
16 6 2.7518 6.2631 -2.5434
17 7 3.8670 6.4010 -3.4835
18 6 3.6252 6.4470 -4.8305
19 1 2.6126 6.3812 -5.2000
20 6 4.6820 6.5772 -5.7212
21 7 5.9161 6.6569 -5.2710
22 14 4.3522 6.6406 -7.5588
23 1 4.1508 8.0511 -7.9772
24 1 5.5111 6.0681 -8.2897
25 1 3.1324 5.8529 -7.8702
26 6 2.1288 5.9662 -0.1268
27 6 2.1839 2.1388 1.1009
28 6 1.8999 1.7096 2.5174
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.3335 1.7131 -2.1291
35 1 3.1007 4.1096 -1.3972
36 1 3.5571 6.5373 2.9415
37 1 1.9196 7.1390 2.6059
38 1 2.6767 8.6358 0.9383
39 1 3.9403 8.7422 2.1871
40 1 5.2818 8.4018 0.3488
41 1 4.9525 6.7022 0.7681
42 1 2.2180 5.3349 -2.7467
43 1 2.0715 7.1066 -2.6606
44 1 4.7766 6.4598 -3.1516
45 1 6.6545 6.7482 -5.8934
46 1 1.4527 6.8212 -0.1180
47 1 1.5846 5.0766 -0.4441
48 1 0.8664 1.9480 2.7688
49 1 2.0579 0.6352 2.6100
50 1 2.5699 2.2354 3.1976
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001201225460.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:38
Heat of formation + Delta-G solvation = -3.783344 kcal
Electronic energy + Delta-G solvation = -30725.368627 eV
Core-core repulsion = 26754.583929 eV
Total energy + Delta-G solvation = -3970.784698 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.55152 -40.03486 -38.21246 -35.17508 -34.92089 -34.16060 -32.94154 -31.69200
-30.94887 -29.47162 -28.71567 -26.78696 -26.14419 -25.04089 -23.91852 -22.67474
-22.15965 -21.06428 -20.63743 -19.72352 -18.29613 -17.24923 -17.16555 -16.65496
-16.38458 -16.11530 -15.47539 -15.20119 -14.93401 -14.53408 -14.36749 -14.08146
-13.85932 -13.56399 -13.32947 -13.17195 -13.12089 -13.02324 -12.76453 -12.56734
-12.48057 -12.29780 -12.17349 -12.00520 -11.88290 -11.62667 -11.56896 -11.48207
-11.15937 -10.87326 -10.77864 -10.65955 -10.20198 -9.98834 -9.68894 -9.65672
-9.25301 -8.82426 -8.48635 -8.38915 -8.06899 -6.84068 -5.68449 -2.96903
1.87192 2.54408 2.70480 3.19281 3.42290 3.47860 3.52560 3.54371
4.05127 4.36574 4.60804 4.62847 4.66727 4.77621 4.82378 4.93888
4.99704 5.07535 5.17846 5.20789 5.24926 5.30490 5.32885 5.40232
5.42869 5.52100 5.60625 5.64271 5.66554 5.71775 5.78000 5.83228
5.86160 5.91368 6.03726 6.07041 6.13490 6.22108 6.27473 6.34005
6.62196 6.66005 6.79857 6.89076 7.13105 7.27041 7.53052 7.75283
8.08937 8.37966 8.49451 9.61173 10.19383 10.55142 11.54256
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.009662 B = 0.004045 C = 0.003014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2897.234406 B = 6920.934159 C = 9288.802855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.096 3.904
3 N -0.442 5.442
4 C -0.014 4.014
5 C -0.172 4.172
6 C -0.235 4.235
7 C 0.593 3.407
8 O -0.555 6.555
9 N -0.604 5.604
10 C 0.112 3.888
11 C -0.165 4.165
12 C 0.074 3.926
13 O -0.368 6.368
14 C 0.080 3.920
15 H 0.056 0.944
16 C 0.162 3.838
17 N -0.725 5.725
18 C -0.238 4.238
19 H 0.070 0.930
20 C -0.013 4.013
21 N -0.931 5.931
22 Si 0.905 3.095
23 H -0.290 1.290
24 H -0.292 1.292
25 H -0.282 1.282
26 C 0.070 3.930
27 C 0.092 3.908
28 C -0.094 4.094
29 H 0.062 0.938
30 H 0.065 0.935
31 H 0.073 0.927
32 H 0.093 0.907
33 H 0.087 0.913
34 H 0.169 0.831
35 H 0.164 0.836
36 H 0.090 0.910
37 H 0.062 0.938
38 H 0.079 0.921
39 H 0.082 0.918
40 H 0.088 0.912
41 H 0.049 0.951
42 H 0.036 0.964
43 H 0.029 0.971
44 H 0.387 0.613
45 H 0.254 0.746
46 H 0.081 0.919
47 H 0.100 0.900
48 H 0.070 0.930
49 H 0.064 0.936
50 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.367 -10.213 16.592 22.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.026 4.026
3 N -0.119 5.119
4 C -0.140 4.140
5 C -0.195 4.195
6 C -0.245 4.245
7 C 0.384 3.616
8 O -0.434 6.434
9 N -0.336 5.336
10 C -0.010 4.010
11 C -0.203 4.203
12 C -0.003 4.003
13 O -0.286 6.286
14 C 0.020 3.980
15 H 0.074 0.926
16 C 0.034 3.966
17 N -0.370 5.370
18 C -0.369 4.369
19 H 0.088 0.912
20 C -0.209 4.209
21 N -0.579 5.579
22 Si 0.737 3.263
23 H -0.218 1.218
24 H -0.219 1.219
25 H -0.208 1.208
26 C -0.054 4.054
27 C -0.024 4.024
28 C -0.151 4.151
29 H 0.081 0.919
30 H 0.084 0.916
31 H 0.092 0.908
32 H 0.111 0.889
33 H 0.105 0.895
34 H 0.186 0.814
35 H 0.181 0.819
36 H 0.108 0.892
37 H 0.080 0.920
38 H 0.098 0.902
39 H 0.101 0.899
40 H 0.106 0.894
41 H 0.068 0.932
42 H 0.053 0.947
43 H 0.046 0.954
44 H 0.221 0.779
45 H 0.064 0.936
46 H 0.099 0.901
47 H 0.118 0.882
48 H 0.089 0.911
49 H 0.083 0.917
50 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -11.300 -10.489 16.845 22.835
hybrid contribution 0.148 -0.075 -0.932 0.947
sum -11.151 -10.564 15.913 22.117
Atomic orbital electron populations
1.22169 0.94309 1.02920 1.03370 1.21860 0.95569 0.80716 1.04405
1.43702 1.50559 1.11734 1.05867 1.21808 1.07795 0.93118 0.91230
1.22777 1.05782 0.97988 0.92961 1.19999 1.16235 0.94423 0.93825
1.17595 0.76934 0.82235 0.84854 1.90695 1.42912 1.85207 1.24620
1.47693 1.64264 1.06575 1.15068 1.21784 1.01030 0.86311 0.91907
1.22493 1.00653 0.97547 0.99621 1.22117 0.93982 1.00672 0.83552
1.86416 1.72888 1.34265 1.34990 1.22510 0.93620 0.86634 0.95243
0.92610 1.20670 0.92102 0.98558 0.85254 1.42243 1.04178 1.88494
1.02057 1.19207 0.92872 1.42186 0.82630 0.91203 1.24722 0.95283
1.03070 0.97809 1.69676 0.97775 1.57176 1.33301 0.86218 0.76811
0.77575 0.85741 1.21792 1.21883 1.20817 1.22711 0.97446 1.03745
0.81536 1.20058 1.02791 0.90443 0.89158 1.20500 1.02859 1.01454
0.90292 0.91905 0.91568 0.90797 0.88868 0.89456 0.81412 0.81915
0.89165 0.92008 0.90233 0.89928 0.89377 0.93239 0.94676 0.95358
0.77883 0.93602 0.90079 0.88159 0.91102 0.91748 0.88607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.03 10.24 37.16 0.38 -0.65 16
2 C 0.10 0.68 6.45 -4.04 -0.03 0.65 16
3 N -0.44 -4.89 2.68 -112.52 -0.30 -5.19 16
4 C -0.01 -0.18 11.33 -16.83 -0.19 -0.37 16
5 C -0.17 -2.57 8.31 -37.50 -0.31 -2.88 16
6 C -0.23 -3.54 5.38 -103.35 -0.56 -4.10 16
7 C 0.59 9.59 7.39 -12.59 -0.09 9.50 16
8 O -0.55 -10.04 14.91 5.25 0.08 -9.96 16
9 N -0.60 -8.75 2.19 -173.83 -0.38 -9.13 16
10 C 0.11 1.40 6.19 -3.19 -0.02 1.38 16
11 C -0.16 -1.96 5.79 -27.17 -0.16 -2.12 16
12 C 0.07 1.10 6.37 36.42 0.23 1.33 16
13 O -0.37 -6.76 9.38 -26.53 -0.25 -7.01 16
14 C 0.08 1.40 1.62 -25.78 -0.04 1.36 16
15 H 0.06 1.07 6.44 -51.93 -0.33 0.73 16
16 C 0.16 3.27 5.54 -4.04 -0.02 3.25 16
17 N -0.73 -18.67 5.54 -59.91 -0.33 -19.01 16
18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16
19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16
21 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16
22 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16
23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
26 C 0.07 1.01 4.41 -3.85 -0.02 0.99 16
27 C 0.09 1.17 6.89 -81.88 -0.56 0.61 16
28 C -0.09 -0.96 9.86 36.01 0.36 -0.60 16
29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16
33 H 0.09 0.51 7.05 -51.93 -0.37 0.15 16
34 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16
35 H 0.16 2.67 3.18 -52.49 -0.17 2.51 16
36 H 0.09 1.20 6.94 -51.92 -0.36 0.84 16
37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
38 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16
39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16
41 H 0.05 0.79 7.41 -51.93 -0.38 0.41 16
42 H 0.04 0.67 7.32 -51.93 -0.38 0.29 16
43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
44 H 0.39 10.77 7.65 -40.82 -0.31 10.46 16
45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16
46 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16
47 H 0.10 1.41 5.19 -51.93 -0.27 1.14 16
48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
49 H 0.06 0.51 7.02 -51.93 -0.36 0.14 16
50 H 0.10 1.16 6.67 -51.93 -0.35 0.81 16
LS Contribution 388.35 15.07 5.85 5.85
Total: -1.00 -34.50 388.35 -8.81 -43.31
By element:
Atomic # 1 Polarization: 18.38 SS G_CDS: -7.90 Total: 10.49 kcal
Atomic # 6 Polarization: 2.34 SS G_CDS: -1.28 Total: 1.06 kcal
Atomic # 7 Polarization: -60.90 SS G_CDS: -0.29 Total: -61.19 kcal
Atomic # 8 Polarization: -16.81 SS G_CDS: -0.17 Total: -16.98 kcal
Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -34.50 -8.81 -43.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001201225460.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.523 kcal
(2) G-P(sol) polarization free energy of solvation -34.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds