Wall clock time and date at job start Tue Mar 31 2020 19:08:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46500 * 109.46872 * 2 1
4 4 C 1.36441 * 124.85488 * 264.98083 * 3 2 1
5 5 C 1.34486 * 108.85844 * 179.73215 * 4 3 2
6 6 C 1.46687 * 106.33439 * 0.43324 * 5 4 3
7 7 C 1.47256 * 126.94787 * 179.82811 * 6 5 4
8 8 O 1.21628 * 120.00646 * 219.28721 * 7 6 5
9 9 N 1.34782 * 119.99468 * 39.28876 * 7 6 5
10 10 C 1.47510 * 118.75593 * 174.01024 * 9 7 6
11 11 C 1.53567 * 110.98925 * 138.32148 * 10 9 7
12 12 C 1.51545 * 109.57689 * 320.05002 * 11 10 9
13 13 O 1.42149 * 108.75352 * 91.39938 * 12 11 10
14 14 C 1.38013 * 119.44336 * 272.77083 * 13 12 11
15 15 H 1.08998 * 109.46819 * 303.42817 * 14 13 12
16 16 C 1.52997 * 109.47316 * 183.43395 * 14 13 12
17 17 N 1.46508 * 109.47279 * 64.99495 * 16 14 13
18 18 C 1.36936 * 119.99722 * 180.02562 * 17 16 14
19 19 H 1.07991 * 120.00250 * 359.97438 * 18 17 16
20 20 C 1.38814 * 119.99384 * 180.02562 * 18 17 16
21 21 N 1.31616 * 120.00237 * 359.97438 * 20 18 17
22 22 Si 1.86805 * 119.99719 * 180.02562 * 20 18 17
23 23 H 1.48493 * 109.47194 * 89.99434 * 22 20 18
24 24 H 1.48499 * 109.46800 * 209.99843 * 22 20 18
25 25 H 1.48501 * 109.46800 * 329.99256 * 22 20 18
26 26 C 1.45086 * 118.73912 * 354.05738 * 9 7 6
27 27 C 1.34660 * 124.84802 * 85.00101 * 3 2 1
28 28 C 1.50704 * 125.80451 * 359.96175 * 27 3 2
29 29 H 1.09005 * 109.47260 * 299.99753 * 1 2 3
30 30 H 1.09000 * 109.47726 * 59.99837 * 1 2 3
31 31 H 1.09000 * 109.47074 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.46946 * 240.00406 * 2 1 3
33 33 H 1.08997 * 109.47322 * 119.99837 * 2 1 3
34 34 H 1.08002 * 125.57076 * 0.02562 * 4 3 2
35 35 H 1.08002 * 126.83494 * 180.26499 * 5 4 3
36 36 H 1.09008 * 109.16838 * 17.95176 * 10 9 7
37 37 H 1.08995 * 109.16942 * 258.69965 * 10 9 7
38 38 H 1.09005 * 109.45588 * 80.08094 * 11 10 9
39 39 H 1.08995 * 109.45678 * 200.03767 * 11 10 9
40 40 H 1.09000 * 109.58966 * 211.18352 * 12 11 10
41 41 H 1.08998 * 109.58484 * 331.47190 * 12 11 10
42 42 H 1.08992 * 109.47678 * 184.99883 * 16 14 13
43 43 H 1.09002 * 109.46897 * 305.00159 * 16 14 13
44 44 H 0.96999 * 119.99535 * 0.02562 * 17 16 14
45 45 H 0.97002 * 119.99903 * 180.02562 * 21 20 18
46 46 H 1.09000 * 109.47999 * 149.31825 * 26 9 7
47 47 H 1.09004 * 109.49107 * 29.33187 * 26 9 7
48 48 H 1.09003 * 109.46557 * 269.99658 * 28 27 3
49 49 H 1.08993 * 109.46738 * 29.99260 * 28 27 3
50 50 H 1.08996 * 109.47225 * 149.99944 * 28 27 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3705 2.0838 -1.1153
5 6 2.7652 3.3154 -0.7467
6 6 2.6534 3.3642 0.7151
7 6 2.9755 4.5041 1.5899
8 8 3.5239 4.3145 2.6589
9 7 2.6624 5.7576 1.2061
10 6 2.8744 6.8648 2.1573
11 6 3.4700 8.0911 1.4503
12 6 4.5064 7.6412 0.4403
13 8 3.8693 7.4563 -0.8169
14 6 3.2914 6.2382 -1.1120
15 1 4.0383 5.4498 -1.0190
16 6 2.7518 6.2631 -2.5434
17 7 3.8670 6.4010 -3.4835
18 6 3.6252 6.4470 -4.8305
19 1 2.6126 6.3812 -5.2000
20 6 4.6820 6.5772 -5.7212
21 7 5.9161 6.6569 -5.2710
22 14 4.3522 6.6406 -7.5588
23 1 4.1508 8.0511 -7.9772
24 1 5.5111 6.0681 -8.2897
25 1 3.1324 5.8529 -7.8702
26 6 2.1288 5.9662 -0.1268
27 6 2.1839 2.1388 1.1009
28 6 1.8999 1.7096 2.5174
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.3335 1.7131 -2.1291
35 1 3.1007 4.1096 -1.3972
36 1 3.5571 6.5373 2.9415
37 1 1.9196 7.1390 2.6059
38 1 2.6767 8.6358 0.9383
39 1 3.9403 8.7422 2.1871
40 1 5.2818 8.4018 0.3488
41 1 4.9525 6.7022 0.7681
42 1 2.2180 5.3349 -2.7467
43 1 2.0715 7.1066 -2.6606
44 1 4.7766 6.4598 -3.1516
45 1 6.6545 6.7482 -5.8934
46 1 1.4527 6.8212 -0.1180
47 1 1.5846 5.0766 -0.4441
48 1 0.8664 1.9480 2.7688
49 1 2.0579 0.6352 2.6100
50 1 2.5699 2.2354 3.1976
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001201225460.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:37
Heat of formation + Delta-G solvation = -25.234850 kcal
Electronic energy + Delta-G solvation = -30726.298834 eV
Core-core repulsion = 26754.583929 eV
Total energy + Delta-G solvation = -3971.714905 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.55275 -41.21270 -39.52502 -36.70634 -36.27601 -35.17826 -34.28856 -32.78362
-32.57103 -30.30224 -30.25627 -27.89016 -27.33351 -26.50940 -24.93301 -24.22127
-23.22796 -22.54036 -21.72807 -20.72124 -19.39015 -19.18111 -18.27674 -17.92558
-17.61638 -17.18127 -16.74560 -16.52716 -16.11908 -15.83377 -15.62350 -15.12857
-15.06020 -14.91026 -14.73818 -14.58171 -14.11384 -13.92577 -13.87327 -13.71016
-13.61852 -13.52995 -13.25666 -13.05918 -12.96315 -12.75499 -12.73438 -12.61648
-12.41571 -12.31791 -12.08866 -12.08471 -11.88945 -11.76232 -11.47282 -10.92641
-10.91565 -10.54328 -9.62522 -9.47444 -9.08112 -8.95009 -7.88631 -5.17830
0.81920 1.49122 1.50215 1.52889 1.60905 1.81547 2.14393 2.26002
2.60694 2.72671 3.45540 3.59993 3.75009 3.80809 3.85176 3.89285
4.03378 4.05403 4.08623 4.14312 4.20919 4.32507 4.34050 4.39707
4.43876 4.46379 4.55491 4.60837 4.67157 4.71087 4.77837 4.82423
4.83625 4.87656 4.92886 4.98292 5.08044 5.10314 5.14775 5.19521
5.25371 5.29576 5.53851 5.55540 5.81198 6.12886 6.30956 6.34244
6.41448 6.74686 7.18281 7.38157 8.12902 8.37372 9.35284
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.009662 B = 0.004045 C = 0.003014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2897.234406 B = 6920.934159 C = 9288.802855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.087 3.913
3 N -0.433 5.433
4 C -0.009 4.009
5 C -0.199 4.199
6 C -0.269 4.269
7 C 0.587 3.413
8 O -0.583 6.583
9 N -0.603 5.603
10 C 0.108 3.892
11 C -0.152 4.152
12 C 0.069 3.931
13 O -0.395 6.395
14 C 0.095 3.905
15 H 0.033 0.967
16 C 0.163 3.837
17 N -0.739 5.739
18 C -0.240 4.240
19 H 0.081 0.919
20 C -0.077 4.077
21 N -0.972 5.972
22 Si 0.974 3.026
23 H -0.289 1.289
24 H -0.298 1.298
25 H -0.265 1.265
26 C 0.086 3.914
27 C 0.096 3.904
28 C -0.089 4.089
29 H 0.057 0.943
30 H 0.054 0.946
31 H 0.097 0.903
32 H 0.109 0.891
33 H 0.105 0.895
34 H 0.187 0.813
35 H 0.143 0.857
36 H 0.081 0.919
37 H 0.085 0.915
38 H 0.082 0.918
39 H 0.112 0.888
40 H 0.096 0.904
41 H 0.032 0.968
42 H 0.052 0.948
43 H 0.030 0.970
44 H 0.372 0.628
45 H 0.249 0.751
46 H 0.096 0.904
47 H 0.105 0.895
48 H 0.086 0.914
49 H 0.091 0.909
50 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.668 -11.417 16.999 24.620
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.032 4.032
3 N -0.109 5.109
4 C -0.136 4.136
5 C -0.222 4.222
6 C -0.279 4.279
7 C 0.379 3.621
8 O -0.465 6.465
9 N -0.334 5.334
10 C -0.013 4.013
11 C -0.190 4.190
12 C -0.007 4.007
13 O -0.314 6.314
14 C 0.035 3.965
15 H 0.050 0.950
16 C 0.037 3.963
17 N -0.382 5.382
18 C -0.372 4.372
19 H 0.099 0.901
20 C -0.269 4.269
21 N -0.623 5.623
22 Si 0.803 3.197
23 H -0.217 1.217
24 H -0.224 1.224
25 H -0.189 1.189
26 C -0.039 4.039
27 C -0.022 4.022
28 C -0.146 4.146
29 H 0.076 0.924
30 H 0.074 0.926
31 H 0.116 0.884
32 H 0.127 0.873
33 H 0.123 0.877
34 H 0.204 0.796
35 H 0.160 0.840
36 H 0.100 0.900
37 H 0.103 0.897
38 H 0.101 0.899
39 H 0.130 0.870
40 H 0.114 0.886
41 H 0.050 0.950
42 H 0.069 0.931
43 H 0.048 0.952
44 H 0.204 0.796
45 H 0.058 0.942
46 H 0.115 0.885
47 H 0.123 0.877
48 H 0.105 0.895
49 H 0.110 0.890
50 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -13.667 -11.704 17.266 24.938
hybrid contribution 0.851 0.246 -0.999 1.335
sum -12.816 -11.458 16.268 23.668
Atomic orbital electron populations
1.22134 0.93269 1.04223 1.02577 1.22247 0.96375 0.78479 1.06135
1.43966 1.49243 1.12909 1.04797 1.22045 1.06533 0.92567 0.92422
1.22626 1.07806 0.98818 0.92955 1.20094 1.18598 0.95375 0.93810
1.17876 0.76523 0.83014 0.84683 1.90665 1.44271 1.85690 1.25858
1.47761 1.63729 1.06786 1.15106 1.21951 1.02108 0.85821 0.91409
1.22405 0.99790 0.97565 0.99223 1.22291 0.95106 1.00150 0.83129
1.86346 1.73461 1.34508 1.37045 1.22234 0.94073 0.85691 0.94539
0.94959 1.20803 0.90661 0.98965 0.85909 1.42445 1.04839 1.88510
1.02360 1.19669 0.93284 1.40440 0.83821 0.90116 1.25578 0.95096
1.03778 1.02417 1.69856 0.98665 1.59193 1.34563 0.85126 0.76944
0.77500 0.80109 1.21674 1.22442 1.18914 1.22499 0.96042 1.04507
0.80820 1.20430 1.01301 0.89845 0.90596 1.20523 1.03190 1.02851
0.88077 0.92390 0.92648 0.88435 0.87318 0.87658 0.79623 0.83998
0.90042 0.89670 0.89891 0.86975 0.88615 0.94992 0.93063 0.95235
0.79650 0.94209 0.88538 0.87675 0.89505 0.89006 0.90738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.50 10.24 71.98 0.74 -0.77 16
2 C 0.09 0.98 6.45 86.38 0.56 1.53 16
3 N -0.43 -8.84 2.68 -509.91 -1.37 -10.21 16
4 C -0.01 -0.22 11.33 83.12 0.94 0.72 16
5 C -0.20 -6.04 8.31 23.62 0.20 -5.85 16
6 C -0.27 -8.20 5.38 -19.04 -0.10 -8.30 16
7 C 0.59 19.36 7.39 86.61 0.64 20.00 16
8 O -0.58 -21.62 14.91 -4.12 -0.06 -21.68 16
9 N -0.60 -17.46 2.19 -822.11 -1.80 -19.25 16
10 C 0.11 2.61 6.19 86.38 0.53 3.14 16
11 C -0.15 -3.41 5.79 30.31 0.18 -3.23 16
12 C 0.07 2.10 6.37 71.51 0.46 2.56 16
13 O -0.39 -14.85 9.38 -117.84 -1.11 -15.95 16
14 C 0.09 3.40 1.62 31.21 0.05 3.45 16
15 H 0.03 1.33 6.44 -2.39 -0.02 1.31 16
16 C 0.16 6.67 5.54 86.38 0.48 7.15 16
17 N -0.74 -38.97 5.54 -343.45 -1.90 -40.88 16
18 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16
19 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16
20 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16
21 N -0.97 -61.26 13.06 21.65 0.28 -60.98 16
22 Si 0.97 46.52 29.55 68.60 2.03 48.55 16
23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16
24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16
25 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16
26 C 0.09 2.46 4.41 87.26 0.38 2.84 16
27 C 0.10 2.36 6.89 41.78 0.29 2.65 16
28 C -0.09 -1.67 9.86 71.24 0.70 -0.97 16
29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16
30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16
31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
32 H 0.11 0.92 8.11 -2.39 -0.02 0.90 16
33 H 0.11 0.84 7.05 -2.39 -0.02 0.83 16
34 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16
35 H 0.14 4.88 3.18 -2.91 -0.01 4.87 16
36 H 0.08 2.13 6.94 -2.38 -0.02 2.12 16
37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16
38 H 0.08 1.86 8.01 -2.38 -0.02 1.84 16
39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16
40 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16
41 H 0.03 1.07 7.41 -2.39 -0.02 1.05 16
42 H 0.05 1.95 7.32 -2.39 -0.02 1.93 16
43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
44 H 0.37 21.59 7.65 -92.71 -0.71 20.88 16
45 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16
46 H 0.10 2.47 8.11 -2.39 -0.02 2.45 16
47 H 0.11 2.95 5.19 -2.38 -0.01 2.94 16
48 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
49 H 0.09 1.18 7.02 -2.39 -0.02 1.16 16
50 H 0.07 1.77 6.67 -2.39 -0.02 1.75 16
Total: -1.00 -76.70 388.35 3.66 -73.03
By element:
Atomic # 1 Polarization: 38.97 SS G_CDS: 0.24 Total: 39.21 kcal
Atomic # 6 Polarization: 0.81 SS G_CDS: 7.35 Total: 8.16 kcal
Atomic # 7 Polarization: -126.53 SS G_CDS: -4.79 Total: -131.32 kcal
Atomic # 8 Polarization: -36.47 SS G_CDS: -1.17 Total: -37.64 kcal
Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal
Total: -76.70 3.66 -73.03 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001201225460.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.799 kcal
(2) G-P(sol) polarization free energy of solvation -76.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds