Wall clock time and date at job start Tue Mar 31 2020 19:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47301 * 2 1 4 4 C 1.36944 * 119.99618 * 275.30634 * 3 2 1 5 5 H 1.07996 * 119.99933 * 37.58211 * 4 3 2 6 6 C 1.38806 * 119.99582 * 217.57645 * 4 3 2 7 7 N 1.31622 * 120.00534 * 21.42883 * 6 4 3 8 8 Si 1.86805 * 119.99768 * 201.42239 * 6 4 3 9 9 H 1.48497 * 109.46818 * 60.00541 * 8 6 4 10 10 H 1.48502 * 109.47191 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47161 * 300.00142 * 8 6 4 12 12 C 1.46500 * 120.00311 * 95.30323 * 3 2 1 13 13 C 1.53004 * 109.47231 * 270.00145 * 12 3 2 14 14 C 1.53001 * 109.46761 * 180.02562 * 13 12 3 15 15 N 1.46505 * 109.46629 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99636 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00092 * 0.27246 * 16 15 14 18 18 C 1.50704 * 119.99665 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.46913 * 180.02562 * 18 16 15 20 20 C 1.38425 * 120.44302 * 269.72655 * 19 18 16 21 21 C 1.50703 * 120.75497 * 359.97438 * 20 19 18 22 22 C 1.38785 * 118.48587 * 179.73416 * 20 19 18 23 23 C 1.38092 * 119.28587 * 0.54262 * 22 20 19 24 24 C 1.50702 * 119.58383 * 179.70420 * 23 22 20 25 25 N 1.31939 * 120.83071 * 359.71617 * 23 22 20 26 26 C 1.32274 * 121.64909 * 0.02562 * 25 23 22 27 27 O 1.35676 * 119.68038 * 180.02562 * 26 25 23 28 28 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47563 * 300.00735 * 1 2 3 30 30 H 1.09007 * 109.46588 * 60.00305 * 1 2 3 31 31 H 1.08991 * 109.47218 * 239.99234 * 2 1 3 32 32 H 1.09007 * 109.46588 * 119.99695 * 2 1 3 33 33 H 0.96999 * 120.00117 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46805 * 149.99932 * 12 3 2 35 35 H 1.09002 * 109.46958 * 30.00018 * 12 3 2 36 36 H 1.08997 * 109.46970 * 60.00102 * 13 12 3 37 37 H 1.09002 * 109.47046 * 299.99819 * 13 12 3 38 38 H 1.08997 * 109.47374 * 60.00253 * 14 13 12 39 39 H 1.09002 * 109.47114 * 299.99681 * 14 13 12 40 40 H 0.97000 * 119.99750 * 359.97438 * 15 14 13 41 41 H 1.08994 * 109.47288 * 300.00321 * 18 16 15 42 42 H 1.08997 * 109.46834 * 60.00366 * 18 16 15 43 43 H 1.08998 * 109.47141 * 90.00019 * 21 20 19 44 44 H 1.09009 * 109.46556 * 209.99819 * 21 20 19 45 45 H 1.08999 * 109.46996 * 329.99506 * 21 20 19 46 46 H 1.07999 * 120.36153 * 180.26120 * 22 20 19 47 47 H 1.09006 * 109.46648 * 270.01370 * 24 23 22 48 48 H 1.08991 * 109.47185 * 30.01212 * 24 23 22 49 49 H 1.08999 * 109.47281 * 150.01890 * 24 23 22 50 50 H 0.96706 * 113.99987 * 269.97875 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4107 1.9277 -1.9628 6 6 3.2113 2.9287 -1.3729 7 7 4.3028 2.7979 -0.6490 8 14 3.0996 4.2792 -2.6587 9 1 1.9630 5.1783 -2.3347 10 1 4.3625 5.0604 -2.6671 11 1 2.8848 3.6721 -3.9968 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7384 1.8364 14 6 1.5133 3.4194 3.1554 15 7 0.3347 4.0945 3.7045 16 6 0.4244 4.7655 4.8699 17 8 1.4820 4.8145 5.4616 18 6 -0.7878 5.4605 5.4344 19 6 -0.4227 6.1311 6.7336 20 6 -0.5503 5.4525 7.9334 21 6 -1.0561 4.0333 7.9659 22 6 -0.1972 6.1072 9.1050 23 6 0.2567 7.4098 9.0405 24 6 0.6357 8.1294 10.3092 25 7 0.3625 8.0324 7.8820 26 6 0.0406 7.4402 6.7439 27 8 0.1655 8.1179 5.5752 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 5.0493 3.4026 -0.7835 34 1 3.1617 2.7641 1.0859 35 1 2.7254 1.2834 1.9722 36 1 0.3541 2.0070 2.0137 37 1 0.7903 3.4877 1.1275 38 1 2.3016 4.1508 2.9776 39 1 1.8657 2.6703 3.8645 40 1 -0.5101 4.0586 3.2292 41 1 -1.1400 6.2098 4.7256 42 1 -1.5762 4.7290 5.6117 43 1 -0.2146 3.3457 7.8809 44 1 -1.5774 3.8549 8.9065 45 1 -1.7420 3.8728 7.1342 46 1 -0.2807 5.6050 10.0575 47 1 -0.2379 8.6436 10.7100 48 1 1.0003 7.4084 11.0407 49 1 1.4186 8.8568 10.0944 50 1 -0.6276 8.6079 5.3179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265129174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:15 Heat of formation + Delta-G solvation = -39.512039 kcal Electronic energy + Delta-G solvation = -28757.013558 eV Core-core repulsion = 24784.679548 eV Total energy + Delta-G solvation = -3972.334010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07303 -39.29864 -37.47737 -36.45196 -35.11338 -34.62237 -32.19083 -31.85604 -31.45505 -30.27954 -28.51679 -27.99638 -26.37889 -24.93139 -23.56077 -22.86706 -21.32669 -21.00697 -20.39235 -19.83493 -18.55849 -17.48971 -16.98400 -16.73478 -16.09057 -15.66013 -15.43128 -15.09034 -14.85317 -14.42171 -14.19480 -13.85900 -13.72144 -13.67319 -13.41494 -13.25334 -13.17550 -13.11236 -12.61337 -12.57270 -12.35914 -12.17409 -12.05462 -11.78720 -11.73320 -11.56625 -11.37767 -11.13458 -11.00390 -10.72937 -10.57053 -10.47656 -10.05103 -9.85582 -9.68618 -9.60805 -9.54802 -9.51581 -8.82649 -8.80266 -8.45835 -6.55431 -5.77403 -3.36862 0.77720 0.98993 2.77473 3.19404 3.35756 3.37741 3.44173 3.44672 3.61193 4.18903 4.34013 4.48378 4.58621 4.59870 4.86584 4.94553 5.04545 5.10787 5.13160 5.26228 5.27269 5.31734 5.37131 5.41928 5.48214 5.59075 5.67922 5.78596 5.82738 5.86274 5.98739 6.04459 6.09820 6.29550 6.34106 6.36138 6.44044 6.49828 6.58949 6.75703 6.80814 6.91104 7.10019 7.18136 7.30901 7.68205 7.69603 7.76672 7.83063 8.38908 8.53647 9.20836 9.83225 10.42054 11.22115 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.002332 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.194794 B =12005.734309 C =13048.263205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.262 4.262 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.145 4.145 14 C 0.121 3.879 15 N -0.726 5.726 16 C 0.513 3.487 17 O -0.534 6.534 18 C -0.096 4.096 19 C -0.136 4.136 20 C -0.012 4.012 21 C -0.121 4.121 22 C -0.184 4.184 23 C 0.150 3.850 24 C -0.103 4.103 25 N -0.508 5.508 26 C 0.333 3.667 27 O -0.475 6.475 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.137 0.863 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.339 5.704 19.749 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.023 3.977 13 C -0.186 4.186 14 C -0.002 4.002 15 N -0.378 5.378 16 C 0.298 3.702 17 O -0.411 6.411 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.020 4.020 21 C -0.177 4.177 22 C -0.204 4.204 23 C 0.013 3.987 24 C -0.161 4.161 25 N -0.228 5.228 26 C 0.154 3.846 27 O -0.281 6.281 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.231 0.769 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.155 0.845 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.492 6.418 20.059 25.012 hybrid contribution -1.167 0.202 -1.067 1.594 sum -14.659 6.620 18.992 24.888 Atomic orbital electron populations 1.22371 1.00210 0.98846 1.01079 1.20844 0.91653 0.87437 0.98700 1.43735 1.76074 1.08151 1.02487 1.18925 1.04666 1.21360 0.94183 0.92389 1.25195 0.94215 1.01281 0.98067 1.69985 1.03165 1.37307 1.42346 0.86490 0.76960 0.82396 0.81633 1.20910 1.21596 1.20738 1.20797 0.94483 0.96632 0.85742 1.22527 1.02308 0.99823 0.93929 1.21468 0.87153 0.96050 0.95538 1.46154 1.14495 1.53957 1.23148 1.20313 0.89850 0.78906 0.81113 1.90726 1.30069 1.60451 1.59832 1.20505 0.97653 1.00703 0.94772 1.20120 1.03703 0.95188 0.94980 1.20048 0.94010 0.96083 0.91819 1.20908 1.01761 0.91789 1.03224 1.21769 1.04005 0.95698 0.98917 1.20965 0.93769 0.91359 0.92639 1.20733 1.02540 1.00603 0.92204 1.66968 1.17696 1.40028 0.98076 1.18840 0.92725 0.88184 0.84860 1.84885 1.41938 1.67414 1.33889 0.94661 0.93835 0.93275 0.93904 0.94876 0.93421 0.88760 0.95726 0.93105 0.91725 0.91584 0.92147 0.76855 0.87817 0.87770 0.89869 0.90755 0.90778 0.84501 0.90310 0.90483 0.90339 0.74677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.21 37.16 0.38 -2.53 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -14.19 2.43 -173.24 -0.42 -14.61 16 4 C -0.26 -7.01 9.45 -15.06 -0.14 -7.15 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.14 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.48 11.47 55.49 0.64 -24.85 16 8 Si 0.90 21.48 29.60 -169.99 -5.03 16.45 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.15 3.42 5.33 -4.04 -0.02 3.40 16 13 C -0.15 -2.67 5.65 -26.73 -0.15 -2.82 16 14 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 15 N -0.73 -10.01 5.56 -60.29 -0.33 -10.35 16 16 C 0.51 7.49 7.82 -10.98 -0.09 7.40 16 17 O -0.53 -10.36 16.03 5.55 0.09 -10.27 16 18 C -0.10 -0.97 5.26 -29.03 -0.15 -1.12 16 19 C -0.14 -1.61 4.40 -104.32 -0.46 -2.07 16 20 C -0.01 -0.13 5.91 -104.35 -0.62 -0.74 16 21 C -0.12 -0.93 9.67 36.01 0.35 -0.58 16 22 C -0.18 -1.79 9.44 -39.43 -0.37 -2.17 16 23 C 0.15 1.65 6.78 -82.60 -0.56 1.09 16 24 C -0.10 -0.77 10.17 36.01 0.37 -0.40 16 25 N -0.51 -6.90 10.30 -9.55 -0.10 -7.00 16 26 C 0.33 4.43 7.72 -17.13 -0.13 4.30 16 27 O -0.47 -5.84 12.62 -18.73 -0.24 -6.07 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.73 6.64 -51.93 -0.34 0.39 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 34 H 0.09 2.47 5.52 -51.93 -0.29 2.18 16 35 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 36 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.40 4.30 8.47 -40.82 -0.35 3.96 16 41 H 0.10 0.84 7.55 -51.93 -0.39 0.45 16 42 H 0.10 0.74 6.06 -51.93 -0.31 0.42 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.41 8.10 -51.92 -0.42 -0.01 16 45 H 0.07 0.48 6.08 -51.93 -0.32 0.16 16 46 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 49 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.40 2.53 9.06 45.56 0.41 2.94 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -35.78 409.63 -8.32 -44.10 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.36 Total: 4.62 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -1.74 Total: 1.80 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.22 Total: -56.81 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.15 Total: -16.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.78 -8.32 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265129174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.593 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds