Wall clock time and date at job start Tue Mar 31 2020 19:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47301 * 2 1 4 4 C 1.36944 * 119.99618 * 275.30634 * 3 2 1 5 5 H 1.07996 * 119.99933 * 37.58211 * 4 3 2 6 6 C 1.38806 * 119.99582 * 217.57645 * 4 3 2 7 7 N 1.31622 * 120.00534 * 21.42883 * 6 4 3 8 8 Si 1.86805 * 119.99768 * 201.42239 * 6 4 3 9 9 H 1.48497 * 109.46818 * 60.00541 * 8 6 4 10 10 H 1.48502 * 109.47191 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47161 * 300.00142 * 8 6 4 12 12 C 1.46500 * 120.00311 * 95.30323 * 3 2 1 13 13 C 1.53004 * 109.47231 * 270.00145 * 12 3 2 14 14 C 1.53001 * 109.46761 * 180.02562 * 13 12 3 15 15 N 1.46505 * 109.46629 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99636 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00092 * 0.27246 * 16 15 14 18 18 C 1.50704 * 119.99665 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.46913 * 180.02562 * 18 16 15 20 20 C 1.38425 * 120.44302 * 269.72655 * 19 18 16 21 21 C 1.50703 * 120.75497 * 359.97438 * 20 19 18 22 22 C 1.38785 * 118.48587 * 179.73416 * 20 19 18 23 23 C 1.38092 * 119.28587 * 0.54262 * 22 20 19 24 24 C 1.50702 * 119.58383 * 179.70420 * 23 22 20 25 25 N 1.31939 * 120.83071 * 359.71617 * 23 22 20 26 26 C 1.32274 * 121.64909 * 0.02562 * 25 23 22 27 27 O 1.35676 * 119.68038 * 180.02562 * 26 25 23 28 28 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47563 * 300.00735 * 1 2 3 30 30 H 1.09007 * 109.46588 * 60.00305 * 1 2 3 31 31 H 1.08991 * 109.47218 * 239.99234 * 2 1 3 32 32 H 1.09007 * 109.46588 * 119.99695 * 2 1 3 33 33 H 0.96999 * 120.00117 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46805 * 149.99932 * 12 3 2 35 35 H 1.09002 * 109.46958 * 30.00018 * 12 3 2 36 36 H 1.08997 * 109.46970 * 60.00102 * 13 12 3 37 37 H 1.09002 * 109.47046 * 299.99819 * 13 12 3 38 38 H 1.08997 * 109.47374 * 60.00253 * 14 13 12 39 39 H 1.09002 * 109.47114 * 299.99681 * 14 13 12 40 40 H 0.97000 * 119.99750 * 359.97438 * 15 14 13 41 41 H 1.08994 * 109.47288 * 300.00321 * 18 16 15 42 42 H 1.08997 * 109.46834 * 60.00366 * 18 16 15 43 43 H 1.08998 * 109.47141 * 90.00019 * 21 20 19 44 44 H 1.09009 * 109.46556 * 209.99819 * 21 20 19 45 45 H 1.08999 * 109.46996 * 329.99506 * 21 20 19 46 46 H 1.07999 * 120.36153 * 180.26120 * 22 20 19 47 47 H 1.09006 * 109.46648 * 270.01370 * 24 23 22 48 48 H 1.08991 * 109.47185 * 30.01212 * 24 23 22 49 49 H 1.08999 * 109.47281 * 150.01890 * 24 23 22 50 50 H 0.96706 * 113.99987 * 269.97875 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4107 1.9277 -1.9628 6 6 3.2113 2.9287 -1.3729 7 7 4.3028 2.7979 -0.6490 8 14 3.0996 4.2792 -2.6587 9 1 1.9630 5.1783 -2.3347 10 1 4.3625 5.0604 -2.6671 11 1 2.8848 3.6721 -3.9968 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7384 1.8364 14 6 1.5133 3.4194 3.1554 15 7 0.3347 4.0945 3.7045 16 6 0.4244 4.7655 4.8699 17 8 1.4820 4.8145 5.4616 18 6 -0.7878 5.4605 5.4344 19 6 -0.4227 6.1311 6.7336 20 6 -0.5503 5.4525 7.9334 21 6 -1.0561 4.0333 7.9659 22 6 -0.1972 6.1072 9.1050 23 6 0.2567 7.4098 9.0405 24 6 0.6357 8.1294 10.3092 25 7 0.3625 8.0324 7.8820 26 6 0.0406 7.4402 6.7439 27 8 0.1655 8.1179 5.5752 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 5.0493 3.4026 -0.7835 34 1 3.1617 2.7641 1.0859 35 1 2.7254 1.2834 1.9722 36 1 0.3541 2.0070 2.0137 37 1 0.7903 3.4877 1.1275 38 1 2.3016 4.1508 2.9776 39 1 1.8657 2.6703 3.8645 40 1 -0.5101 4.0586 3.2292 41 1 -1.1400 6.2098 4.7256 42 1 -1.5762 4.7290 5.6117 43 1 -0.2146 3.3457 7.8809 44 1 -1.5774 3.8549 8.9065 45 1 -1.7420 3.8728 7.1342 46 1 -0.2807 5.6050 10.0575 47 1 -0.2379 8.6436 10.7100 48 1 1.0003 7.4084 11.0407 49 1 1.4186 8.8568 10.0944 50 1 -0.6276 8.6079 5.3179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265129174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:14 Heat of formation + Delta-G solvation = -66.600686 kcal Electronic energy + Delta-G solvation = -28758.188210 eV Core-core repulsion = 24784.679548 eV Total energy + Delta-G solvation = -3973.508662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90739 -40.46331 -38.31327 -38.18467 -36.24687 -35.71998 -33.81445 -33.09588 -32.70440 -31.21789 -30.13790 -28.66858 -27.51789 -26.46171 -25.09620 -23.74480 -22.57729 -22.19734 -21.94208 -21.12365 -19.39855 -18.62147 -18.28126 -18.07593 -17.20971 -17.00677 -16.58648 -16.49904 -16.04101 -15.79947 -15.48089 -15.14165 -15.01641 -14.61121 -14.44224 -14.29821 -14.12276 -14.03851 -13.85062 -13.79642 -13.29138 -13.21208 -13.17000 -12.88619 -12.84279 -12.72667 -12.67519 -12.55117 -12.48652 -12.41951 -12.33679 -12.14005 -11.93168 -11.46583 -11.24167 -11.03427 -10.48934 -10.44623 -10.37512 -10.09111 -9.62881 -8.54351 -7.80755 -5.44989 -0.02090 0.20568 1.45145 1.48102 1.54142 1.65199 2.19166 2.50762 2.58152 2.72289 3.24710 3.43400 3.67700 3.68572 3.80719 3.89325 4.00396 4.16016 4.22005 4.34616 4.38269 4.46296 4.47292 4.55234 4.56808 4.66082 4.72586 4.74057 4.77773 4.79130 4.84472 4.90284 5.00643 5.03016 5.05358 5.11164 5.17530 5.22955 5.33237 5.35187 5.45237 5.47947 5.61955 5.67403 5.70095 5.84749 6.48117 6.58066 6.62404 6.97361 7.19083 7.28757 7.89516 8.41645 9.13600 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.002332 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.194794 B =12005.734309 C =13048.263205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.262 4.262 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.298 1.298 11 H -0.273 1.273 12 C 0.150 3.850 13 C -0.120 4.120 14 C 0.135 3.865 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.588 6.588 18 C -0.085 4.085 19 C -0.153 4.153 20 C -0.020 4.020 21 C -0.119 4.119 22 C -0.186 4.186 23 C 0.133 3.867 24 C -0.101 4.101 25 N -0.544 5.544 26 C 0.309 3.691 27 O -0.495 6.495 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.416 0.584 41 H 0.126 0.874 42 H 0.142 0.858 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.169 0.831 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.066 0.934 50 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.423 4.952 20.864 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.224 1.224 11 H -0.199 1.199 12 C 0.023 3.977 13 C -0.160 4.160 14 C 0.010 3.990 15 N -0.367 5.367 16 C 0.299 3.701 17 O -0.468 6.468 18 C -0.125 4.125 19 C -0.157 4.157 20 C -0.028 4.028 21 C -0.175 4.175 22 C -0.205 4.205 23 C -0.004 4.004 24 C -0.158 4.158 25 N -0.264 5.264 26 C 0.131 3.869 27 O -0.304 6.304 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.253 0.747 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.186 0.814 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.085 0.915 50 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -16.656 5.657 21.153 27.512 hybrid contribution -0.195 0.377 -1.356 1.421 sum -16.852 6.034 19.797 26.689 Atomic orbital electron populations 1.22165 0.97060 1.00814 1.00925 1.21007 0.94002 0.85615 0.98570 1.43982 1.76475 1.09593 1.02202 1.19149 1.04015 1.21197 0.94880 0.92556 1.25872 0.94053 1.03422 1.00198 1.70128 1.03794 1.38128 1.44297 0.85562 0.76500 0.79921 0.79827 1.20260 1.22424 1.19892 1.20697 0.95393 0.96042 0.85601 1.22143 1.00609 0.99515 0.93759 1.21076 0.87701 0.95259 0.94999 1.45949 1.14187 1.53372 1.23164 1.21109 0.90531 0.78026 0.80443 1.90708 1.32511 1.62272 1.61287 1.20537 0.96040 1.01562 0.94331 1.20323 1.04304 0.94857 0.96234 1.20497 0.93361 0.97293 0.91617 1.20976 1.01638 0.89497 1.05355 1.22161 1.02891 0.95264 1.00201 1.21610 0.93467 0.92357 0.92942 1.20824 1.02935 1.00795 0.91230 1.66974 1.19054 1.41367 0.99052 1.19158 0.93623 0.89156 0.84972 1.84821 1.43766 1.67898 1.33937 0.91629 0.92846 0.94477 0.95360 0.93756 0.94118 0.92568 0.95502 0.90724 0.93001 0.94737 0.92361 0.74704 0.85625 0.84052 0.91138 0.88260 0.89245 0.81395 0.88541 0.88278 0.91540 0.72422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.21 71.98 0.73 -4.12 16 2 C 0.13 5.40 6.44 86.38 0.56 5.95 16 3 N -0.60 -29.10 2.43 -701.99 -1.71 -30.81 16 4 C -0.26 -14.08 9.45 84.03 0.79 -13.28 16 5 H 0.06 3.00 7.92 -2.91 -0.02 2.98 16 6 C -0.04 -2.12 4.95 84.86 0.42 -1.70 16 7 N -0.92 -54.50 11.47 21.65 0.25 -54.25 16 8 Si 0.95 44.71 29.60 68.60 2.03 46.74 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.15 6.85 5.33 86.38 0.46 7.32 16 13 C -0.12 -4.31 5.65 30.60 0.17 -4.14 16 14 C 0.13 4.56 5.67 86.38 0.49 5.05 16 15 N -0.71 -18.62 5.56 -463.04 -2.57 -21.19 16 16 C 0.51 14.37 7.82 87.66 0.69 15.05 16 17 O -0.59 -23.05 16.03 -3.04 -0.05 -23.10 16 18 C -0.09 -1.52 5.26 29.10 0.15 -1.37 16 19 C -0.15 -3.46 4.40 -19.67 -0.09 -3.55 16 20 C -0.02 -0.38 5.91 -19.69 -0.12 -0.50 16 21 C -0.12 -1.49 9.67 71.24 0.69 -0.80 16 22 C -0.19 -3.29 9.44 22.37 0.21 -3.07 16 23 C 0.13 2.84 6.78 42.51 0.29 3.12 16 24 C -0.10 -1.37 10.17 71.24 0.72 -0.65 16 25 N -0.54 -14.98 10.30 -296.98 -3.06 -18.03 16 26 C 0.31 8.27 7.72 84.78 0.65 8.92 16 27 O -0.49 -12.33 12.62 -89.94 -1.14 -13.47 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.61 6.64 -2.39 -0.02 1.60 16 30 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 32 H 0.04 1.67 7.83 -2.38 -0.02 1.65 16 33 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 34 H 0.06 3.06 5.52 -2.39 -0.01 3.05 16 35 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 36 H 0.07 2.34 6.64 -2.39 -0.02 2.32 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.42 7.82 8.47 -92.71 -0.79 7.04 16 41 H 0.13 1.70 7.55 -2.39 -0.02 1.68 16 42 H 0.14 1.44 6.06 -2.39 -0.01 1.42 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 0.73 8.10 -2.38 -0.02 0.71 16 45 H 0.09 0.81 6.08 -2.39 -0.01 0.80 16 46 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.42 5.33 9.06 -74.05 -0.67 4.66 16 Total: -1.00 -81.08 409.63 0.09 -80.99 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.50 Total: 20.89 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 6.83 Total: 12.24 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -7.09 Total: -124.28 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.18 Total: -36.57 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -81.08 0.09 -80.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265129174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.384 kcal (2) G-P(sol) polarization free energy of solvation -81.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds