Wall clock time and date at job start Tue Mar 31 2020 18:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.09000 * 109.46565 * 2 1 4 4 C 1.52997 * 109.47026 * 119.99970 * 2 1 3 5 5 N 1.46504 * 109.46534 * 174.99999 * 4 2 1 6 6 C 1.34784 * 119.99641 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99805 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.46028 * 60.03125 * 8 6 5 10 10 C 1.53025 * 109.46021 * 300.06831 * 8 6 5 11 11 C 1.53486 * 109.53922 * 239.98348 * 10 8 6 12 12 H 1.08999 * 111.32632 * 177.42764 * 11 10 8 13 13 C 1.52146 * 107.68388 * 55.81848 * 11 10 8 14 14 C 1.33094 * 113.75582 * 301.59042 * 13 11 10 15 15 C 1.52148 * 113.76271 * 0.02562 * 14 13 11 16 16 H 1.09000 * 110.77734 * 179.66588 * 15 14 13 17 17 C 1.53405 * 107.84315 * 301.72356 * 15 14 13 18 18 C 1.53025 * 109.55156 * 55.70460 * 17 15 14 19 19 N 1.46893 * 109.47049 * 240.00650 * 2 1 3 20 20 C 1.46897 * 111.00523 * 84.99758 * 19 2 1 21 21 C 1.50699 * 109.47267 * 180.02562 * 20 19 2 22 22 O 1.21285 * 120.00205 * 359.97438 * 21 20 19 23 23 N 1.34781 * 119.99855 * 180.02562 * 21 20 19 24 24 C 1.37102 * 119.99749 * 179.97438 * 23 21 20 25 25 H 1.07996 * 119.99965 * 359.97438 * 24 23 21 26 26 C 1.38953 * 119.99539 * 180.02562 * 24 23 21 27 27 N 1.31411 * 120.00085 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 119.99687 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47137 * 359.97438 * 28 26 24 30 30 H 1.48498 * 109.47368 * 119.99700 * 28 26 24 31 31 H 1.48505 * 109.47193 * 239.99616 * 28 26 24 32 32 H 1.08993 * 109.46848 * 299.99188 * 1 2 3 33 33 H 1.09000 * 109.47090 * 59.99819 * 1 2 3 34 34 H 1.09000 * 109.46565 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46840 * 55.00490 * 4 2 1 36 36 H 1.08995 * 109.47660 * 295.00134 * 4 2 1 37 37 H 0.96996 * 120.00515 * 0.02562 * 5 4 2 38 38 H 1.08998 * 109.46017 * 119.95791 * 10 8 6 39 39 H 1.09008 * 109.45975 * 0.02562 * 10 8 6 40 40 H 1.08000 * 123.12422 * 121.57356 * 13 11 10 41 41 H 1.08006 * 123.11848 * 180.02562 * 14 13 11 42 42 H 1.09008 * 109.45796 * 295.67501 * 17 15 14 43 43 H 1.09002 * 109.45609 * 175.72956 * 17 15 14 44 44 H 1.09009 * 109.45438 * 239.97502 * 18 17 15 45 45 H 1.08996 * 109.46072 * 120.02502 * 18 17 15 46 46 H 1.00896 * 111.00045 * 208.95262 * 19 2 1 47 47 H 1.09005 * 109.46906 * 299.99629 * 20 19 2 48 48 H 1.09001 * 109.47199 * 59.99786 * 20 19 2 49 49 H 0.97001 * 120.00224 * 359.97438 * 23 21 20 50 50 H 0.96999 * 119.99563 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5002 -0.8263 1.1904 6 6 4.1732 -1.4291 2.1906 7 8 3.5700 -1.8850 3.1389 8 6 5.6751 -1.5367 2.1304 9 1 6.1092 -0.5379 2.0858 10 6 6.0803 -2.3246 0.8827 11 6 6.8633 -3.5775 1.2986 12 1 7.1279 -4.1850 0.4331 13 6 5.9934 -4.3663 2.2660 14 6 5.6411 -3.6810 3.3512 15 6 6.1859 -2.2608 3.3831 16 1 5.8641 -1.7435 4.2869 17 6 7.7157 -2.3423 3.3016 18 6 8.1208 -3.1301 2.0539 19 7 2.0197 -0.6923 -1.1995 20 6 2.0825 0.2228 -2.3469 21 6 2.5874 -0.5216 -3.5560 22 8 2.8678 -1.6985 -3.4703 23 7 2.7282 0.1208 -4.7325 24 6 3.1880 -0.5563 -5.8324 25 1 3.4377 -1.6042 -5.7561 26 6 3.3338 0.1061 -7.0452 27 7 3.0304 1.3814 -7.1379 28 14 3.9609 -0.8162 -8.5436 29 1 4.2295 -2.2302 -8.1780 30 1 2.9375 -0.7682 -9.6186 31 1 5.2149 -0.1832 -9.0255 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3632 -1.0277 0.0005 35 1 1.6055 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1370 37 1 3.9825 -0.4621 0.4318 38 1 6.7064 -1.6997 0.2460 39 1 5.1861 -2.6204 0.3338 40 1 5.6897 -5.3874 2.0884 41 1 5.0255 -4.0947 4.1363 42 1 8.1003 -2.8448 4.1892 43 1 8.1304 -1.3358 3.2461 44 1 8.6977 -4.0066 2.3493 45 1 8.7278 -2.4976 1.4062 46 1 2.9174 -1.1203 -1.0288 47 1 1.0870 0.6164 -2.5525 48 1 2.7589 1.0464 -2.1182 49 1 2.5043 1.0621 -4.8010 50 1 3.1325 1.8438 -7.9844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266939993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:37 Heat of formation + Delta-G solvation = -65.468456 kcal Electronic energy + Delta-G solvation = -29399.889770 eV Core-core repulsion = 25426.430205 eV Total energy + Delta-G solvation = -3973.459565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25153 -39.12317 -38.32942 -36.90318 -34.16881 -33.77130 -31.77171 -31.27638 -31.16429 -30.93931 -30.56845 -26.81113 -26.09647 -24.04176 -23.42162 -22.39051 -21.58419 -20.66469 -20.30821 -19.33872 -17.99571 -17.62237 -17.01992 -16.46122 -16.21508 -16.18560 -15.59676 -15.34266 -14.98431 -14.89363 -14.49342 -14.23086 -13.89786 -13.47978 -13.23391 -13.12009 -12.79136 -12.69015 -12.55521 -12.45524 -12.38066 -12.32792 -12.09175 -11.92022 -11.80712 -11.72166 -11.60146 -11.43268 -11.12078 -10.89185 -10.79094 -10.37041 -10.34378 -10.25789 -10.06394 -9.70705 -9.55594 -9.18613 -9.01162 -8.50905 -8.15829 -8.00002 -6.45425 -3.86251 2.18041 2.58857 3.04416 3.13708 3.24765 3.31857 3.85924 4.01834 4.25110 4.27911 4.36735 4.45045 4.64716 4.80697 4.90203 4.96054 5.00240 5.03422 5.05302 5.16362 5.21720 5.23636 5.27970 5.30384 5.33918 5.49203 5.54191 5.66091 5.71949 5.73824 5.75459 5.82742 5.86505 5.88355 5.93010 5.97238 5.99035 6.01165 6.02434 6.17460 6.25315 6.36719 6.55521 6.86043 7.12822 7.35002 7.52087 7.54946 8.02686 8.13819 8.57135 9.14354 9.50232 10.01355 10.72312 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.002739 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.750116 B =10221.612280 C =12045.653829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.048 0.952 4 C 0.119 3.881 5 N -0.733 5.733 6 C 0.522 3.478 7 O -0.535 6.535 8 C -0.102 4.102 9 H 0.098 0.902 10 C -0.110 4.110 11 C -0.059 4.059 12 H 0.085 0.915 13 C -0.176 4.176 14 C -0.133 4.133 15 C -0.041 4.041 16 H 0.085 0.915 17 C -0.112 4.112 18 C -0.114 4.114 19 N -0.663 5.663 20 C 0.049 3.951 21 C 0.440 3.560 22 O -0.582 6.582 23 N -0.563 5.563 24 C -0.299 4.299 25 H 0.104 0.896 26 C 0.022 3.978 27 N -0.901 5.901 28 Si 0.929 3.071 29 H -0.268 1.268 30 H -0.281 1.281 31 H -0.282 1.282 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.347 0.653 47 H 0.088 0.912 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -1.112 19.848 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.005 4.005 5 N -0.386 5.386 6 C 0.308 3.692 7 O -0.411 6.411 8 C -0.124 4.124 9 H 0.116 0.884 10 C -0.148 4.148 11 C -0.077 4.077 12 H 0.103 0.897 13 C -0.194 4.194 14 C -0.151 4.151 15 C -0.059 4.059 16 H 0.104 0.896 17 C -0.150 4.150 18 C -0.151 4.151 19 N -0.299 5.299 20 C -0.084 4.084 21 C 0.225 3.775 22 O -0.466 6.466 23 N -0.200 5.200 24 C -0.428 4.428 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.543 5.543 28 Si 0.756 3.244 29 H -0.192 1.192 30 H -0.207 1.207 31 H -0.208 1.208 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.168 0.832 47 H 0.106 0.894 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.038 -2.348 20.254 21.002 hybrid contribution 0.953 1.009 -1.147 1.800 sum 5.991 -1.340 19.107 20.069 Atomic orbital electron populations 1.21735 0.93422 1.02948 1.01513 1.21809 0.97118 0.95884 0.89074 0.93409 1.21577 0.79484 1.01914 0.97485 1.46079 1.08018 1.60422 1.24063 1.20580 0.89840 0.76861 0.81890 1.90674 1.70218 1.46899 1.33281 1.21523 0.91982 1.01223 0.97638 0.88425 1.21737 1.01232 0.96319 0.95493 1.20624 0.94283 0.95327 0.97494 0.89683 1.23774 1.00248 0.99174 0.96180 1.23661 0.98419 0.94717 0.98316 1.20446 0.94420 0.94431 0.96646 0.89627 1.21654 0.94387 1.00489 0.98451 1.21665 0.96780 0.99965 0.96693 1.60113 1.34803 1.32242 1.02694 1.21762 1.01501 0.93790 0.91322 1.19786 0.85059 0.88211 0.84449 1.90531 1.55269 1.16068 1.84732 1.41875 1.57703 1.12417 1.07985 1.19753 1.39845 0.96455 0.86791 0.87855 1.25264 0.97643 0.95774 0.99249 1.69618 1.48661 1.08858 1.27138 0.85807 0.78242 0.79650 0.80704 1.19187 1.20722 1.20755 0.92528 0.91990 0.91532 0.90442 0.90970 0.76673 0.90453 0.90684 0.86457 0.86383 0.91528 0.91606 0.91779 0.91514 0.83173 0.89405 0.93891 0.77483 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.42 37.16 0.35 -1.15 16 2 C 0.07 0.83 2.81 -67.71 -0.19 0.64 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.11 16 4 C 0.12 1.37 5.31 -4.04 -0.02 1.35 16 5 N -0.73 -8.19 4.73 -60.29 -0.28 -8.48 16 6 C 0.52 6.41 6.61 -10.98 -0.07 6.34 16 7 O -0.53 -8.20 14.96 5.56 0.08 -8.11 16 8 C -0.10 -1.01 2.52 -91.53 -0.23 -1.24 16 9 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 10 C -0.11 -1.10 5.17 -26.47 -0.14 -1.24 16 11 C -0.06 -0.57 3.58 -90.62 -0.32 -0.89 16 12 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.18 -1.88 9.81 -35.38 -0.35 -2.23 16 14 C -0.13 -1.47 8.24 -35.38 -0.29 -1.76 16 15 C -0.04 -0.40 2.69 -90.61 -0.24 -0.64 16 16 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 17 C -0.11 -0.89 5.67 -26.51 -0.15 -1.04 16 18 C -0.11 -0.92 5.67 -26.53 -0.15 -1.07 16 19 N -0.66 -10.11 5.92 -107.99 -0.64 -10.75 16 20 C 0.05 0.81 5.96 -4.98 -0.03 0.78 16 21 C 0.44 10.03 7.82 -10.98 -0.09 9.94 16 22 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 23 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 24 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 25 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 26 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 27 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 28 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 29 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 30 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 31 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 4.05 7.27 -40.82 -0.30 3.75 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.88 7.44 -51.92 -0.39 0.50 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.35 5.44 6.41 -39.29 -0.25 5.18 16 47 H 0.09 1.37 7.44 -51.93 -0.39 0.99 16 48 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 49 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 50 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -32.07 396.03 -9.59 -41.66 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -8.28 Total: 16.70 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.17 Total: -0.05 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.26 Total: -56.58 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.17 Total: -23.42 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.07 -9.59 -41.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.811 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds