Wall clock time and date at job start Tue Mar 31 2020 18:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.09000 * 109.46565 * 2 1 4 4 C 1.52997 * 109.47026 * 119.99970 * 2 1 3 5 5 N 1.46504 * 109.46534 * 174.99999 * 4 2 1 6 6 C 1.34784 * 119.99641 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99805 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.46028 * 60.03125 * 8 6 5 10 10 C 1.53025 * 109.46021 * 300.06831 * 8 6 5 11 11 C 1.53486 * 109.53922 * 239.98348 * 10 8 6 12 12 H 1.08999 * 111.32632 * 177.42764 * 11 10 8 13 13 C 1.52146 * 107.68388 * 55.81848 * 11 10 8 14 14 C 1.33094 * 113.75582 * 301.59042 * 13 11 10 15 15 C 1.52148 * 113.76271 * 0.02562 * 14 13 11 16 16 H 1.09000 * 110.77734 * 179.66588 * 15 14 13 17 17 C 1.53405 * 107.84315 * 301.72356 * 15 14 13 18 18 C 1.53025 * 109.55156 * 55.70460 * 17 15 14 19 19 N 1.46893 * 109.47049 * 240.00650 * 2 1 3 20 20 C 1.46897 * 111.00523 * 84.99758 * 19 2 1 21 21 C 1.50699 * 109.47267 * 180.02562 * 20 19 2 22 22 O 1.21285 * 120.00205 * 359.97438 * 21 20 19 23 23 N 1.34781 * 119.99855 * 180.02562 * 21 20 19 24 24 C 1.37102 * 119.99749 * 179.97438 * 23 21 20 25 25 H 1.07996 * 119.99965 * 359.97438 * 24 23 21 26 26 C 1.38953 * 119.99539 * 180.02562 * 24 23 21 27 27 N 1.31411 * 120.00085 * 359.97438 * 26 24 23 28 28 Si 1.86796 * 119.99687 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47137 * 359.97438 * 28 26 24 30 30 H 1.48498 * 109.47368 * 119.99700 * 28 26 24 31 31 H 1.48505 * 109.47193 * 239.99616 * 28 26 24 32 32 H 1.08993 * 109.46848 * 299.99188 * 1 2 3 33 33 H 1.09000 * 109.47090 * 59.99819 * 1 2 3 34 34 H 1.09000 * 109.46565 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46840 * 55.00490 * 4 2 1 36 36 H 1.08995 * 109.47660 * 295.00134 * 4 2 1 37 37 H 0.96996 * 120.00515 * 0.02562 * 5 4 2 38 38 H 1.08998 * 109.46017 * 119.95791 * 10 8 6 39 39 H 1.09008 * 109.45975 * 0.02562 * 10 8 6 40 40 H 1.08000 * 123.12422 * 121.57356 * 13 11 10 41 41 H 1.08006 * 123.11848 * 180.02562 * 14 13 11 42 42 H 1.09008 * 109.45796 * 295.67501 * 17 15 14 43 43 H 1.09002 * 109.45609 * 175.72956 * 17 15 14 44 44 H 1.09009 * 109.45438 * 239.97502 * 18 17 15 45 45 H 1.08996 * 109.46072 * 120.02502 * 18 17 15 46 46 H 1.00896 * 111.00045 * 208.95262 * 19 2 1 47 47 H 1.09005 * 109.46906 * 299.99629 * 20 19 2 48 48 H 1.09001 * 109.47199 * 59.99786 * 20 19 2 49 49 H 0.97001 * 120.00224 * 359.97438 * 23 21 20 50 50 H 0.96999 * 119.99563 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5002 -0.8263 1.1904 6 6 4.1732 -1.4291 2.1906 7 8 3.5700 -1.8850 3.1389 8 6 5.6751 -1.5367 2.1304 9 1 6.1092 -0.5379 2.0858 10 6 6.0803 -2.3246 0.8827 11 6 6.8633 -3.5775 1.2986 12 1 7.1279 -4.1850 0.4331 13 6 5.9934 -4.3663 2.2660 14 6 5.6411 -3.6810 3.3512 15 6 6.1859 -2.2608 3.3831 16 1 5.8641 -1.7435 4.2869 17 6 7.7157 -2.3423 3.3016 18 6 8.1208 -3.1301 2.0539 19 7 2.0197 -0.6923 -1.1995 20 6 2.0825 0.2228 -2.3469 21 6 2.5874 -0.5216 -3.5560 22 8 2.8678 -1.6985 -3.4703 23 7 2.7282 0.1208 -4.7325 24 6 3.1880 -0.5563 -5.8324 25 1 3.4377 -1.6042 -5.7561 26 6 3.3338 0.1061 -7.0452 27 7 3.0304 1.3814 -7.1379 28 14 3.9609 -0.8162 -8.5436 29 1 4.2295 -2.2302 -8.1780 30 1 2.9375 -0.7682 -9.6186 31 1 5.2149 -0.1832 -9.0255 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3632 -1.0277 0.0005 35 1 1.6055 -1.7198 1.2950 36 1 1.7518 -0.1584 2.1370 37 1 3.9825 -0.4621 0.4318 38 1 6.7064 -1.6997 0.2460 39 1 5.1861 -2.6204 0.3338 40 1 5.6897 -5.3874 2.0884 41 1 5.0255 -4.0947 4.1363 42 1 8.1003 -2.8448 4.1892 43 1 8.1304 -1.3358 3.2461 44 1 8.6977 -4.0066 2.3493 45 1 8.7278 -2.4976 1.4062 46 1 2.9174 -1.1203 -1.0288 47 1 1.0870 0.6164 -2.5525 48 1 2.7589 1.0464 -2.1182 49 1 2.5043 1.0621 -4.8010 50 1 3.1325 1.8438 -7.9844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266939993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:36 Heat of formation + Delta-G solvation = -87.552288 kcal Electronic energy + Delta-G solvation = -29400.847396 eV Core-core repulsion = 25426.430205 eV Total energy + Delta-G solvation = -3974.417192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08282 -40.32921 -39.78052 -38.10382 -35.97087 -35.00917 -33.28358 -32.66121 -31.96412 -31.68145 -31.56920 -28.15853 -27.31328 -25.70433 -24.25206 -23.15336 -22.34050 -21.66198 -21.27053 -21.05957 -19.91474 -18.66181 -17.82549 -17.73699 -17.23869 -17.07143 -16.89738 -16.66686 -16.30540 -15.92555 -15.86733 -15.56318 -15.30021 -14.92751 -14.34368 -14.03913 -13.95000 -13.71496 -13.57964 -13.49063 -13.28472 -13.21399 -13.14052 -13.09358 -12.93275 -12.90168 -12.80648 -12.59725 -12.38946 -12.33693 -12.11082 -11.88556 -11.58508 -11.50373 -11.08974 -10.79354 -10.63610 -10.33358 -10.14302 -10.00201 -9.86419 -9.37318 -8.46108 -5.94290 1.33191 1.37015 1.42975 1.56540 1.63112 2.06126 2.14906 2.29604 2.87307 3.21682 3.48043 3.50986 3.58399 3.68202 3.71723 4.04704 4.12062 4.17057 4.23435 4.25893 4.33406 4.37931 4.39182 4.45845 4.50022 4.54345 4.59113 4.60190 4.62668 4.75327 4.81539 4.91947 5.03866 5.05686 5.09892 5.12833 5.17182 5.18685 5.30971 5.33159 5.37526 5.42422 5.45769 5.74318 5.88706 6.01932 6.09737 6.35070 6.44269 6.61187 7.14078 7.19996 7.57691 8.13006 8.71408 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.002739 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.750116 B =10221.612280 C =12045.653829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.070 0.930 4 C 0.124 3.876 5 N -0.727 5.727 6 C 0.518 3.482 7 O -0.570 6.570 8 C -0.097 4.097 9 H 0.124 0.876 10 C -0.108 4.108 11 C -0.061 4.061 12 H 0.084 0.916 13 C -0.185 4.185 14 C -0.146 4.146 15 C -0.040 4.040 16 H 0.080 0.920 17 C -0.108 4.108 18 C -0.110 4.110 19 N -0.680 5.680 20 C 0.064 3.936 21 C 0.438 3.562 22 O -0.623 6.623 23 N -0.572 5.572 24 C -0.331 4.331 25 H 0.078 0.922 26 C -0.012 4.012 27 N -0.920 5.920 28 Si 0.990 3.010 29 H -0.274 1.274 30 H -0.273 1.273 31 H -0.270 1.270 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.405 0.595 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.343 0.657 47 H 0.104 0.896 48 H 0.073 0.927 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.840 0.577 19.922 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.379 5.379 6 C 0.305 3.695 7 O -0.449 6.449 8 C -0.118 4.118 9 H 0.142 0.858 10 C -0.146 4.146 11 C -0.080 4.080 12 H 0.103 0.897 13 C -0.203 4.203 14 C -0.164 4.164 15 C -0.059 4.059 16 H 0.098 0.902 17 C -0.145 4.145 18 C -0.147 4.147 19 N -0.315 5.315 20 C -0.068 4.068 21 C 0.225 3.775 22 O -0.509 6.509 23 N -0.210 5.210 24 C -0.461 4.461 25 H 0.096 0.904 26 C -0.211 4.211 27 N -0.561 5.561 28 Si 0.814 3.186 29 H -0.199 1.199 30 H -0.198 1.198 31 H -0.195 1.195 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.241 0.759 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.163 0.837 47 H 0.122 0.878 48 H 0.091 0.909 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.978 -0.621 20.324 21.194 hybrid contribution 0.586 0.434 -1.118 1.335 sum 6.564 -0.187 19.206 20.298 Atomic orbital electron populations 1.21749 0.92758 1.02399 1.02633 1.21848 0.97482 0.96445 0.87286 0.91246 1.21502 0.79615 1.00911 0.97932 1.46054 1.07967 1.59934 1.23983 1.21066 0.90923 0.76096 0.81385 1.90659 1.71121 1.48416 1.34719 1.21567 0.90178 1.02580 0.97497 0.85779 1.21729 1.00559 0.96744 0.95542 1.20680 0.94855 0.95054 0.97394 0.89738 1.23943 1.00528 0.99350 0.96496 1.23755 0.98591 0.95866 0.98213 1.20469 0.95784 0.93235 0.96386 0.90164 1.21655 0.92706 1.01603 0.98546 1.21663 0.95916 1.00409 0.96758 1.60106 1.34794 1.32917 1.03727 1.21622 1.02591 0.93689 0.88937 1.20867 0.83193 0.87964 0.85435 1.90505 1.56590 1.18210 1.85597 1.41929 1.58275 1.12573 1.08196 1.19676 1.41930 0.95883 0.88595 0.90412 1.25992 0.97294 0.96584 1.01273 1.69670 1.48695 1.09624 1.28080 0.84912 0.78192 0.78092 0.77412 1.19856 1.19819 1.19501 0.90069 0.92187 0.92966 0.92591 0.89830 0.75884 0.88756 0.93018 0.86746 0.87587 0.91114 0.89766 0.91465 0.90122 0.83678 0.87789 0.90887 0.76946 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.42 71.99 0.68 -2.04 16 2 C 0.08 1.67 2.81 44.92 0.13 1.79 16 3 H 0.07 1.24 7.80 -2.39 -0.02 1.22 16 4 C 0.12 2.72 5.31 86.38 0.46 3.18 16 5 N -0.73 -15.52 4.73 -463.05 -2.19 -17.71 16 6 C 0.52 12.44 6.61 87.66 0.58 13.02 16 7 O -0.57 -17.66 14.96 -3.03 -0.05 -17.70 16 8 C -0.10 -1.78 2.52 -11.38 -0.03 -1.81 16 9 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 10 C -0.11 -2.05 5.17 30.77 0.16 -1.89 16 11 C -0.06 -1.14 3.58 -10.79 -0.04 -1.18 16 12 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 13 C -0.19 -4.05 9.81 25.00 0.25 -3.80 16 14 C -0.15 -3.30 8.24 25.00 0.21 -3.10 16 15 C -0.04 -0.74 2.69 -10.79 -0.03 -0.77 16 16 H 0.08 1.58 8.06 -2.39 -0.02 1.56 16 17 C -0.11 -1.48 5.67 30.74 0.17 -1.30 16 18 C -0.11 -1.57 5.67 30.72 0.17 -1.39 16 19 N -0.68 -19.90 5.92 -495.58 -2.94 -22.83 16 20 C 0.06 2.01 5.96 85.56 0.51 2.52 16 21 C 0.44 19.94 7.82 87.66 0.69 20.63 16 22 O -0.62 -33.54 15.78 -3.04 -0.05 -33.58 16 23 N -0.57 -28.35 5.29 -306.98 -1.62 -29.97 16 24 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 25 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 26 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 27 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 28 Si 0.99 42.19 29.55 68.60 2.03 44.22 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 30 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 31 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 7.62 7.27 -92.71 -0.67 6.95 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.22 7.44 -2.38 -0.02 1.20 16 40 H 0.11 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.11 2.57 8.06 -2.91 -0.02 2.54 16 42 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.34 10.51 6.41 -89.70 -0.58 9.94 16 47 H 0.10 3.00 7.44 -2.38 -0.02 2.98 16 48 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 49 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 50 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -70.28 396.03 -0.37 -70.65 By element: Atomic # 1 Polarization: 50.08 SS G_CDS: -1.02 Total: 49.05 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 5.18 Total: 6.13 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -6.46 Total: -118.76 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.09 Total: -51.29 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -70.28 -0.37 -70.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266939993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.905 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds