Wall clock time and date at job start Tue Mar 31 2020 19:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46898 * 109.47057 * 2 1 4 4 C 1.46896 * 111.00248 * 66.04366 * 3 2 1 5 5 C 1.46907 * 110.99721 * 190.00071 * 3 2 1 6 6 C 1.50694 * 109.46822 * 169.99666 * 5 3 2 7 7 O 1.21282 * 120.00538 * 0.02562 * 6 5 3 8 8 N 1.34780 * 120.00077 * 179.97438 * 6 5 3 9 9 C 1.46500 * 120.00390 * 180.02562 * 8 6 5 10 10 C 1.54412 * 129.01250 * 180.02562 * 9 8 6 11 11 C 1.54419 * 78.89086 * 180.64334 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99800 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47099 * 60.00960 * 21 19 17 23 23 H 1.48500 * 109.47049 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47582 * 300.00427 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 H 1.09001 * 109.47097 * 299.99893 * 1 2 3 29 29 H 1.09000 * 109.47432 * 60.00120 * 1 2 3 30 30 H 1.09004 * 109.47542 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47438 * 239.99410 * 2 1 3 32 32 H 1.09002 * 109.46944 * 119.99694 * 2 1 3 33 33 H 1.09000 * 109.47008 * 183.94991 * 4 3 2 34 34 H 1.08995 * 109.46973 * 303.95668 * 4 3 2 35 35 H 1.09006 * 109.46830 * 63.95389 * 4 3 2 36 36 H 1.08994 * 109.47025 * 49.99559 * 5 3 2 37 37 H 1.09005 * 109.46781 * 289.99801 * 5 3 2 38 38 H 0.97004 * 119.99616 * 0.02562 * 8 6 5 39 39 H 1.08992 * 114.93459 * 68.15798 * 10 9 8 40 40 H 1.08998 * 114.98218 * 293.12337 * 10 9 8 41 41 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 42 42 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 43 43 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 44 44 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 45 45 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 46 46 H 1.09005 * 113.76708 * 269.66738 * 25 14 12 47 47 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 48 48 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 49 49 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 50 50 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 1.2532 5 6 3.4685 1.4311 -0.2382 6 6 3.8934 2.8573 -0.4756 7 8 3.0704 3.7477 -0.4486 8 7 5.1881 3.1435 -0.7170 9 6 5.6013 4.5300 -0.9472 10 6 7.0109 5.0884 -1.2397 11 6 6.1714 6.3844 -1.2406 12 6 6.6177 7.8037 -1.4803 13 8 7.7844 8.0417 -1.7108 14 7 5.7207 8.8086 -1.4374 15 6 5.7969 10.2714 -1.6176 16 6 4.5280 10.3393 -0.7485 17 6 3.5005 11.3207 -1.2507 18 1 3.6938 11.8949 -2.1447 19 6 2.3132 11.4848 -0.5692 20 7 2.0776 10.7852 0.5192 21 14 1.0392 12.7007 -1.1921 22 1 0.6159 12.3158 -2.5625 23 1 -0.1390 12.6897 -0.2883 24 1 1.6280 14.0637 -1.2203 25 6 4.2676 8.8881 -1.1924 26 6 5.4965 5.7711 0.0114 27 6 5.1402 5.5388 -2.0283 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9824 3.1099 1.1987 34 1 0.5919 2.0179 1.4051 35 1 2.1769 1.5791 2.0859 36 1 3.7122 0.8289 -1.1134 37 1 3.9925 1.0358 0.6321 38 1 5.8464 2.4313 -0.7382 39 1 7.4242 4.8081 -2.2085 40 1 7.7204 5.0012 -0.4169 41 1 5.6424 10.5959 -2.6467 42 1 6.6720 10.7262 -1.1537 43 1 4.7312 10.4430 0.3173 44 1 1.2424 10.9010 0.9988 45 1 3.9214 8.2381 -0.3888 46 1 3.6645 8.8068 -2.0967 47 1 6.1306 5.7174 0.8963 48 1 4.4875 6.1308 0.2131 49 1 4.1089 5.8840 -1.9538 50 1 5.4428 5.2691 -3.0401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271365844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:00 Heat of formation + Delta-G solvation = 75.004741 kcal Electronic energy + Delta-G solvation = -29214.974055 eV Core-core repulsion = 25247.605865 eV Total energy + Delta-G solvation = -3967.368190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04665 -39.72182 -38.88068 -37.25452 -36.73769 -33.90710 -32.63209 -31.36561 -29.32860 -28.38006 -26.09412 -25.76023 -25.67298 -25.38928 -25.03645 -23.65178 -21.65313 -20.85064 -20.02647 -18.96489 -17.80979 -17.32685 -16.90259 -16.57334 -16.17614 -15.85477 -15.59939 -15.00960 -14.84710 -14.70435 -14.44755 -14.24045 -14.08336 -13.77296 -13.67161 -13.21962 -13.15526 -12.46296 -12.32858 -12.27797 -12.00187 -11.96195 -11.90527 -11.58782 -11.50387 -11.39983 -11.20957 -11.19497 -11.11593 -10.93220 -10.78151 -10.44050 -10.40522 -10.25793 -9.88393 -9.59682 -9.26108 -9.11059 -8.95303 -8.62115 -8.54962 -7.84393 -6.13866 -4.19730 2.46631 2.57244 2.97083 3.28770 3.34299 3.35701 3.49384 3.67597 4.11031 4.33590 4.36876 4.39311 4.42793 4.61359 4.65753 4.72318 4.78661 4.90008 4.95702 5.03689 5.16220 5.17070 5.28070 5.31594 5.52955 5.56948 5.62469 5.62623 5.68480 5.82472 5.87138 5.92704 6.02902 6.07140 6.07940 6.13530 6.23148 6.30736 6.40784 6.49421 6.60535 6.63944 6.72970 6.73896 6.86423 7.31127 7.58018 7.83155 8.11604 8.20110 8.49432 8.77175 8.83264 9.46972 10.95678 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.002952 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.248508 B = 9483.628506 C =11947.218149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.525 5.525 4 C 0.014 3.986 5 C 0.039 3.961 6 C 0.513 3.487 7 O -0.499 6.499 8 N -0.681 5.681 9 C 0.095 3.905 10 C -0.083 4.083 11 C -0.142 4.142 12 C 0.588 3.412 13 O -0.561 6.561 14 N -0.631 5.631 15 C 0.104 3.896 16 C 0.035 3.965 17 C -0.521 4.521 18 H 0.063 0.937 19 C 0.069 3.931 20 N -0.885 5.885 21 Si 0.895 3.105 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.106 3.894 26 C -0.100 4.100 27 C -0.096 4.096 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.020 0.980 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.404 0.596 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.265 0.735 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -23.242 0.072 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.250 5.250 4 C -0.133 4.133 5 C -0.092 4.092 6 C 0.298 3.702 7 O -0.372 6.372 8 N -0.332 5.332 9 C 0.007 3.993 10 C -0.121 4.121 11 C -0.146 4.146 12 C 0.376 3.624 13 O -0.442 6.442 14 N -0.363 5.363 15 C -0.018 4.018 16 C 0.015 3.985 17 C -0.559 4.559 18 H 0.081 0.919 19 C -0.135 4.135 20 N -0.521 5.521 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.017 4.017 26 C -0.139 4.139 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.240 0.760 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.201 -22.442 -0.250 22.551 hybrid contribution -0.040 -0.374 0.341 0.508 sum 2.161 -22.815 0.091 22.918 Atomic orbital electron populations 1.21802 0.94440 1.01524 1.02992 1.22125 0.96668 0.88211 1.00630 1.61673 1.10991 1.15692 1.36626 1.22644 1.01710 1.01090 0.87893 1.21939 0.90339 0.94223 1.02741 1.20576 0.81652 0.91224 0.76722 1.90747 1.50657 1.48067 1.47699 1.44627 1.08880 1.06234 1.73419 1.23209 0.96499 0.81656 0.97960 1.23965 0.93975 0.91908 1.02283 1.23232 0.98544 0.92369 1.00418 1.18023 0.84644 0.82919 0.76839 1.90637 1.17825 1.84039 1.51666 1.50353 1.10936 1.07665 1.67334 1.23549 1.00308 0.77039 1.00856 1.20504 0.90496 0.91252 0.96208 1.20913 1.00908 1.22938 1.11134 0.91930 1.25019 0.98320 0.95641 0.94526 1.69936 1.25137 1.40178 1.16862 0.86608 0.80727 0.81592 0.78814 1.20067 1.21234 1.20111 1.23772 0.77579 1.00813 0.99487 1.24828 1.01463 0.92497 0.95130 1.24332 0.99432 0.92622 0.97087 0.92423 0.91565 0.92240 0.90756 0.94901 0.89063 0.90947 0.96186 0.87809 0.91862 0.76044 0.90112 0.90025 0.90655 0.91938 0.91700 0.92570 0.91691 0.90679 0.90611 0.89102 0.89103 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.84 37.16 0.37 -0.69 16 2 C 0.05 0.37 5.68 -3.83 -0.02 0.35 16 3 N -0.53 -5.17 4.50 -244.37 -1.10 -6.27 16 4 C 0.01 0.15 9.01 60.06 0.54 0.69 16 5 C 0.04 0.31 5.45 -4.97 -0.03 0.29 16 6 C 0.51 5.88 7.55 -10.99 -0.08 5.80 16 7 O -0.50 -8.04 14.23 5.56 0.08 -7.96 16 8 N -0.68 -6.62 5.71 -62.68 -0.36 -6.98 16 9 C 0.10 1.20 3.92 -147.16 -0.58 0.62 16 10 C -0.08 -1.05 7.78 -26.71 -0.21 -1.25 16 11 C -0.14 -2.30 3.11 -172.27 -0.54 -2.84 16 12 C 0.59 11.94 8.17 -10.99 -0.09 11.85 16 13 O -0.56 -12.82 17.82 5.56 0.10 -12.72 16 14 N -0.63 -13.22 3.61 -178.41 -0.64 -13.86 16 15 C 0.10 2.20 8.39 -2.97 -0.02 2.17 16 16 C 0.03 0.82 3.62 -90.83 -0.33 0.49 16 17 C -0.52 -13.40 8.77 -34.44 -0.30 -13.70 16 18 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.88 -24.42 13.27 55.43 0.74 -23.68 16 21 Si 0.90 20.41 29.54 -169.99 -5.02 15.38 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.11 2.30 8.17 -2.96 -0.02 2.27 16 26 C -0.10 -1.50 7.93 -24.71 -0.20 -1.70 16 27 C -0.10 -1.41 7.76 -25.99 -0.20 -1.62 16 28 H 0.06 0.42 6.47 -51.93 -0.34 0.09 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.45 7.93 -51.93 -0.41 0.04 16 32 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 33 H 0.09 1.20 5.88 -51.93 -0.31 0.90 16 34 H 0.07 0.71 6.30 -51.93 -0.33 0.38 16 35 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.10 0.60 7.93 -51.93 -0.41 0.19 16 37 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 38 H 0.40 2.40 8.83 -40.82 -0.36 2.04 16 39 H 0.08 0.94 7.94 -51.93 -0.41 0.52 16 40 H 0.08 0.95 7.91 -51.93 -0.41 0.54 16 41 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.68 8.13 -51.93 -0.42 1.25 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.06 1.43 7.63 -51.93 -0.40 1.03 16 46 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 47 H 0.08 1.06 7.91 -51.93 -0.41 0.65 16 48 H 0.09 1.56 7.45 -51.93 -0.39 1.17 16 49 H 0.09 1.52 7.97 -51.92 -0.41 1.10 16 50 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 LS Contribution 407.95 15.07 6.15 6.15 Total: -1.00 -32.04 407.95 -10.21 -42.25 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.34 Total: 3.27 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.81 Total: 4.43 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -1.37 Total: -50.79 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.18 Total: -20.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.04 -10.21 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271365844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.252 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds