Wall clock time and date at job start Tue Mar 31 2020 19:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47208 * 2 1 4 4 C 1.46897 * 111.00101 * 66.04414 * 3 2 1 5 5 C 1.46896 * 111.00104 * 189.99966 * 3 2 1 6 6 C 1.50703 * 109.47499 * 169.99711 * 5 3 2 7 7 O 1.21280 * 119.99689 * 0.02562 * 6 5 3 8 8 N 1.34774 * 120.00668 * 179.97438 * 6 5 3 9 9 C 1.48120 * 127.03750 * 354.65969 * 8 6 5 10 10 C 1.54539 * 103.45364 * 219.17792 * 9 8 6 11 11 C 1.54584 * 102.94529 * 322.85717 * 10 9 8 12 12 H 1.09001 * 118.12646 * 242.21340 * 11 10 9 13 13 C 1.52938 * 118.19670 * 85.24839 * 11 10 9 14 14 C 1.47526 * 127.04973 * 174.97384 * 8 6 5 15 15 C 1.50697 * 117.37126 * 296.11850 * 14 8 6 16 16 O 1.21282 * 120.00255 * 143.05295 * 15 14 8 17 17 N 1.34777 * 119.99460 * 323.05333 * 15 14 8 18 18 C 1.47063 * 136.06270 * 4.62410 * 17 15 14 19 19 C 1.53761 * 87.88974 * 152.96547 * 18 17 15 20 20 C 1.50697 * 114.08686 * 139.78122 * 19 18 17 21 21 H 1.07997 * 119.99831 * 266.56091 * 20 19 18 22 22 C 1.37884 * 119.99839 * 86.56438 * 20 19 18 23 23 N 1.31515 * 119.99985 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46995 * 89.99873 * 24 22 20 26 26 H 1.48497 * 109.46934 * 209.99870 * 24 22 20 27 27 H 1.48506 * 109.47089 * 330.00145 * 24 22 20 28 28 C 1.47070 * 136.05030 * 184.99917 * 17 15 14 29 29 H 1.08993 * 109.47417 * 300.00245 * 1 2 3 30 30 H 1.08997 * 109.46902 * 60.00355 * 1 2 3 31 31 H 1.09007 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46811 * 239.99615 * 2 1 3 33 33 H 1.08997 * 109.47188 * 120.00112 * 2 1 3 34 34 H 1.09007 * 109.47329 * 183.95378 * 4 3 2 35 35 H 1.09003 * 109.47307 * 303.95184 * 4 3 2 36 36 H 1.08996 * 109.46949 * 63.95333 * 4 3 2 37 37 H 1.08998 * 109.47473 * 289.99842 * 5 3 2 38 38 H 1.09000 * 109.47143 * 49.99723 * 5 3 2 39 39 H 1.08999 * 110.66558 * 337.67756 * 9 8 6 40 40 H 1.09007 * 110.65704 * 100.78452 * 9 8 6 41 41 H 1.08997 * 110.84871 * 204.41673 * 10 9 8 42 42 H 1.08999 * 110.54655 * 81.15403 * 10 9 8 43 43 H 1.09000 * 117.44903 * 160.77411 * 13 11 10 44 44 H 1.08997 * 117.43531 * 16.01069 * 13 11 10 45 45 H 1.08996 * 113.47278 * 267.69675 * 18 17 15 46 46 H 1.08998 * 113.46370 * 38.14172 * 18 17 15 47 47 H 1.09002 * 114.39569 * 272.68049 * 19 18 17 48 48 H 0.96998 * 119.99998 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.47474 * 321.86136 * 28 17 15 50 50 H 1.09001 * 113.46805 * 92.24656 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4685 1.4311 -0.2381 6 6 3.8934 2.8573 -0.4755 7 8 3.0704 3.7477 -0.4485 8 7 5.1881 3.1435 -0.7169 9 6 6.3322 2.2037 -0.6763 10 6 7.4612 3.0392 -0.0317 11 6 7.2317 4.4479 -0.6255 12 1 8.0196 4.8800 -1.2425 13 6 6.2269 5.3692 0.0675 14 6 5.7571 4.4583 -1.0693 15 6 5.3228 5.0738 -2.3745 16 8 5.1584 6.2727 -2.4546 17 7 5.1170 4.2918 -3.4527 18 6 5.1254 2.8477 -3.7307 19 6 4.1356 3.1199 -4.8754 20 6 4.4003 2.3154 -6.1218 21 1 5.0074 2.7297 -6.9131 22 6 3.8673 1.0504 -6.2520 23 7 3.1275 0.5462 -5.2886 24 14 4.1949 0.0534 -7.7973 25 1 5.4272 -0.7545 -7.6132 26 1 3.0450 -0.8498 -8.0566 27 1 4.3728 0.9719 -8.9506 28 6 4.7918 4.5076 -4.8707 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.9824 3.1099 1.1987 35 1 0.5919 2.0179 1.4051 36 1 2.1769 1.5790 2.0859 37 1 3.9925 1.0359 0.6321 38 1 3.7122 0.8289 -1.1134 39 1 6.0961 1.3367 -0.0592 40 1 6.6124 1.8951 -1.6836 41 1 8.4401 2.6546 -0.3178 42 1 7.3537 3.0554 1.0528 43 1 6.2975 6.4368 -0.1406 44 1 5.9210 5.1074 1.0804 45 1 6.0919 2.4768 -4.0718 46 1 4.7040 2.2480 -2.9240 47 1 3.0880 3.1200 -4.5742 48 1 2.7523 -0.3435 -5.3803 49 1 4.0863 5.3219 -5.0353 50 1 5.6705 4.5754 -5.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271366083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:51 Heat of formation + Delta-G solvation = 27.155697 kcal Electronic energy + Delta-G solvation = -31241.788391 eV Core-core repulsion = 27272.345311 eV Total energy + Delta-G solvation = -3969.443080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.89255 -39.06959 -38.42659 -36.91465 -36.58205 -33.20818 -32.65906 -30.92267 -30.57738 -29.18791 -27.95048 -25.67211 -25.09975 -24.98057 -23.66551 -22.93501 -21.28903 -20.95131 -20.12313 -19.48805 -17.82401 -17.12350 -16.63476 -16.35680 -15.99547 -15.76787 -15.38877 -15.08538 -14.72336 -14.48797 -14.33158 -14.25087 -13.73350 -13.57411 -13.27697 -13.07972 -12.89082 -12.53554 -12.42235 -12.18407 -12.14321 -11.88195 -11.80991 -11.58179 -11.50503 -11.38347 -11.30571 -11.17245 -10.99752 -10.83191 -10.80464 -10.67190 -10.42063 -10.26446 -9.56196 -9.48661 -9.19916 -9.10280 -8.59654 -8.41629 -8.20497 -7.82275 -6.16111 -4.22123 2.57784 2.84262 3.02273 3.22319 3.30645 3.33515 3.45666 3.79760 4.00654 4.33190 4.37918 4.49334 4.70952 4.89986 4.98739 5.03229 5.05080 5.08534 5.13402 5.16889 5.31289 5.39250 5.47728 5.51642 5.54084 5.56742 5.63741 5.66330 5.75862 5.82893 5.87085 6.02632 6.05483 6.09683 6.15287 6.19595 6.26517 6.31352 6.34673 6.47829 6.55016 6.70262 6.82616 7.00878 7.14840 7.59414 7.64445 7.81568 8.20213 8.40859 8.53126 8.79166 8.81598 9.43970 10.92818 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007839 B = 0.005510 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.962392 B = 5080.171638 C = 7412.803267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.521 5.521 4 C 0.017 3.983 5 C 0.046 3.954 6 C 0.538 3.462 7 O -0.505 6.505 8 N -0.591 5.591 9 C 0.098 3.902 10 C -0.104 4.104 11 C -0.139 4.139 12 H 0.125 0.875 13 C -0.119 4.119 14 C 0.066 3.934 15 C 0.575 3.425 16 O -0.557 6.557 17 N -0.630 5.630 18 C 0.104 3.896 19 C 0.037 3.963 20 C -0.517 4.517 21 H 0.062 0.938 22 C 0.070 3.930 23 N -0.880 5.880 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.099 3.901 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.015 0.985 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.263 0.737 49 H 0.057 0.943 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -3.242 14.248 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 N -0.245 5.245 4 C -0.130 4.130 5 C -0.085 4.085 6 C 0.326 3.674 7 O -0.378 6.378 8 N -0.328 5.328 9 C -0.024 4.024 10 C -0.142 4.142 11 C -0.159 4.159 12 H 0.143 0.857 13 C -0.158 4.158 14 C -0.023 4.023 15 C 0.362 3.638 16 O -0.436 6.436 17 N -0.362 5.362 18 C -0.019 4.019 19 C 0.018 3.982 20 C -0.555 4.555 21 H 0.081 0.919 22 C -0.134 4.134 23 N -0.517 5.517 24 Si 0.721 3.279 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.023 4.023 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.134 0.866 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.277 -1.976 14.067 15.154 hybrid contribution 0.662 -1.209 -0.177 1.390 sum 5.939 -3.185 13.891 15.439 Atomic orbital electron populations 1.21780 0.94649 1.01361 1.02711 1.22112 0.96504 0.88048 1.00766 1.61551 1.11286 1.15955 1.35741 1.22600 1.01381 1.00810 0.88244 1.21938 0.89785 0.94079 1.02691 1.20224 0.79873 0.91169 0.76097 1.90702 1.49781 1.48398 1.48921 1.48293 1.06277 1.07675 1.70539 1.22749 0.85023 0.92700 1.01950 1.22329 0.99119 0.92270 1.00472 1.23758 0.90953 0.97820 1.03331 0.85668 1.23366 0.98048 0.97973 0.96368 1.21491 0.96809 0.89139 0.94872 1.18656 0.77140 0.85317 0.82682 1.90637 1.53681 1.14708 1.84565 1.49783 1.66722 1.10909 1.08818 1.23633 1.00616 0.78813 0.98811 1.20377 0.95258 0.88922 0.93619 1.20889 1.32560 0.99907 1.02156 0.91933 1.25012 0.94280 0.97766 0.96310 1.69975 1.32641 1.16768 1.32310 0.86581 0.77802 0.80046 0.83507 1.20607 1.21144 1.19727 1.23382 0.98809 1.01202 0.78927 0.92914 0.91340 0.92356 0.90094 0.95326 0.89605 0.91202 0.96633 0.92550 0.87018 0.89703 0.89896 0.89103 0.90375 0.86588 0.88197 0.91247 0.92428 0.91336 0.92746 0.92463 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.84 37.16 0.37 -1.36 16 2 C 0.05 0.67 5.68 -3.83 -0.02 0.65 16 3 N -0.52 -7.95 4.50 -244.38 -1.10 -9.05 16 4 C 0.02 0.24 9.01 60.06 0.54 0.78 16 5 C 0.05 0.67 4.49 -4.98 -0.02 0.64 16 6 C 0.54 9.43 6.83 -10.99 -0.08 9.35 16 7 O -0.51 -11.01 14.72 5.56 0.08 -10.93 16 8 N -0.59 -9.08 1.81 -156.52 -0.28 -9.36 16 9 C 0.10 1.08 6.50 -2.34 -0.02 1.07 16 10 C -0.10 -0.94 6.84 -25.09 -0.17 -1.11 16 11 C -0.14 -1.68 6.95 -89.30 -0.62 -2.30 16 12 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -1.64 9.79 -26.73 -0.26 -1.90 16 14 C 0.07 1.11 2.34 -131.85 -0.31 0.80 16 15 C 0.57 12.32 7.95 -10.99 -0.09 12.24 16 16 O -0.56 -13.52 17.29 5.56 0.10 -13.42 16 17 N -0.63 -13.63 3.69 -185.04 -0.68 -14.32 16 18 C 0.10 2.21 6.70 -8.37 -0.06 2.15 16 19 C 0.04 0.91 3.80 -91.12 -0.35 0.56 16 20 C -0.52 -13.16 8.82 -34.44 -0.30 -13.46 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 23 N -0.88 -23.57 13.26 55.43 0.74 -22.83 16 24 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 C 0.10 2.17 8.18 -8.50 -0.07 2.10 16 29 H 0.05 0.57 6.47 -51.93 -0.34 0.24 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 33 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 35 H 0.07 0.88 6.30 -51.93 -0.33 0.56 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 38 H 0.11 1.66 7.93 -51.93 -0.41 1.25 16 39 H 0.08 0.72 7.23 -51.93 -0.38 0.35 16 40 H 0.08 0.98 7.19 -51.92 -0.37 0.61 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.12 1.66 7.88 -51.93 -0.41 1.25 16 44 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 46 H 0.06 1.23 5.99 -51.93 -0.31 0.92 16 47 H 0.07 1.89 8.11 -51.93 -0.42 1.47 16 48 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -32.92 399.54 -9.98 -42.90 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.27 Total: 4.26 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: -1.55 Total: 11.92 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -1.33 Total: -55.56 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.18 Total: -24.35 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.92 -9.98 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271366083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.056 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds