Wall clock time and date at job start Tue Mar 31 2020 19:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47208 * 2 1 4 4 C 1.46897 * 111.00101 * 66.04414 * 3 2 1 5 5 C 1.46896 * 111.00104 * 189.99966 * 3 2 1 6 6 C 1.50703 * 109.47499 * 169.99711 * 5 3 2 7 7 O 1.21280 * 119.99689 * 0.02562 * 6 5 3 8 8 N 1.34774 * 120.00668 * 179.97438 * 6 5 3 9 9 C 1.48120 * 127.03750 * 354.65969 * 8 6 5 10 10 C 1.54539 * 103.45364 * 219.17792 * 9 8 6 11 11 C 1.54584 * 102.94529 * 322.85717 * 10 9 8 12 12 H 1.09001 * 118.12646 * 242.21340 * 11 10 9 13 13 C 1.52938 * 118.19670 * 85.24839 * 11 10 9 14 14 C 1.47526 * 127.04973 * 174.97384 * 8 6 5 15 15 C 1.50697 * 117.37126 * 296.11850 * 14 8 6 16 16 O 1.21282 * 120.00255 * 143.05295 * 15 14 8 17 17 N 1.34777 * 119.99460 * 323.05333 * 15 14 8 18 18 C 1.47063 * 136.06270 * 4.62410 * 17 15 14 19 19 C 1.53761 * 87.88974 * 152.96547 * 18 17 15 20 20 C 1.50697 * 114.08686 * 139.78122 * 19 18 17 21 21 H 1.07997 * 119.99831 * 266.56091 * 20 19 18 22 22 C 1.37884 * 119.99839 * 86.56438 * 20 19 18 23 23 N 1.31515 * 119.99985 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46995 * 89.99873 * 24 22 20 26 26 H 1.48497 * 109.46934 * 209.99870 * 24 22 20 27 27 H 1.48506 * 109.47089 * 330.00145 * 24 22 20 28 28 C 1.47070 * 136.05030 * 184.99917 * 17 15 14 29 29 H 1.08993 * 109.47417 * 300.00245 * 1 2 3 30 30 H 1.08997 * 109.46902 * 60.00355 * 1 2 3 31 31 H 1.09007 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46811 * 239.99615 * 2 1 3 33 33 H 1.08997 * 109.47188 * 120.00112 * 2 1 3 34 34 H 1.09007 * 109.47329 * 183.95378 * 4 3 2 35 35 H 1.09003 * 109.47307 * 303.95184 * 4 3 2 36 36 H 1.08996 * 109.46949 * 63.95333 * 4 3 2 37 37 H 1.08998 * 109.47473 * 289.99842 * 5 3 2 38 38 H 1.09000 * 109.47143 * 49.99723 * 5 3 2 39 39 H 1.08999 * 110.66558 * 337.67756 * 9 8 6 40 40 H 1.09007 * 110.65704 * 100.78452 * 9 8 6 41 41 H 1.08997 * 110.84871 * 204.41673 * 10 9 8 42 42 H 1.08999 * 110.54655 * 81.15403 * 10 9 8 43 43 H 1.09000 * 117.44903 * 160.77411 * 13 11 10 44 44 H 1.08997 * 117.43531 * 16.01069 * 13 11 10 45 45 H 1.08996 * 113.47278 * 267.69675 * 18 17 15 46 46 H 1.08998 * 113.46370 * 38.14172 * 18 17 15 47 47 H 1.09002 * 114.39569 * 272.68049 * 19 18 17 48 48 H 0.96998 * 119.99998 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.47474 * 321.86136 * 28 17 15 50 50 H 1.09001 * 113.46805 * 92.24656 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4685 1.4311 -0.2381 6 6 3.8934 2.8573 -0.4755 7 8 3.0704 3.7477 -0.4485 8 7 5.1881 3.1435 -0.7169 9 6 6.3322 2.2037 -0.6763 10 6 7.4612 3.0392 -0.0317 11 6 7.2317 4.4479 -0.6255 12 1 8.0196 4.8800 -1.2425 13 6 6.2269 5.3692 0.0675 14 6 5.7571 4.4583 -1.0693 15 6 5.3228 5.0738 -2.3745 16 8 5.1584 6.2727 -2.4546 17 7 5.1170 4.2918 -3.4527 18 6 5.1254 2.8477 -3.7307 19 6 4.1356 3.1199 -4.8754 20 6 4.4003 2.3154 -6.1218 21 1 5.0074 2.7297 -6.9131 22 6 3.8673 1.0504 -6.2520 23 7 3.1275 0.5462 -5.2886 24 14 4.1949 0.0534 -7.7973 25 1 5.4272 -0.7545 -7.6132 26 1 3.0450 -0.8498 -8.0566 27 1 4.3728 0.9719 -8.9506 28 6 4.7918 4.5076 -4.8707 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.9824 3.1099 1.1987 35 1 0.5919 2.0179 1.4051 36 1 2.1769 1.5790 2.0859 37 1 3.9925 1.0359 0.6321 38 1 3.7122 0.8289 -1.1134 39 1 6.0961 1.3367 -0.0592 40 1 6.6124 1.8951 -1.6836 41 1 8.4401 2.6546 -0.3178 42 1 7.3537 3.0554 1.0528 43 1 6.2975 6.4368 -0.1406 44 1 5.9210 5.1074 1.0804 45 1 6.0919 2.4768 -4.0718 46 1 4.7040 2.2480 -2.9240 47 1 3.0880 3.1200 -4.5742 48 1 2.7523 -0.3435 -5.3803 49 1 4.0863 5.3219 -5.0353 50 1 5.6705 4.5754 -5.5121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271366083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:50 Heat of formation + Delta-G solvation = 5.347417 kcal Electronic energy + Delta-G solvation = -31242.734069 eV Core-core repulsion = 27272.345311 eV Total energy + Delta-G solvation = -3970.388758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16026 -40.62872 -39.76804 -38.55896 -37.81791 -34.66436 -34.34664 -31.94265 -31.68824 -30.84912 -29.06552 -27.41137 -26.78433 -26.31540 -24.63531 -24.32583 -22.61026 -21.98317 -21.39645 -20.96603 -19.31146 -18.78408 -18.33987 -17.68699 -17.25388 -16.86173 -16.79652 -16.59283 -16.24656 -16.12248 -15.60204 -15.42596 -15.12287 -14.74327 -14.43936 -14.31335 -14.17914 -13.97861 -13.81980 -13.54109 -13.31924 -13.22932 -13.07842 -12.93188 -12.80551 -12.77221 -12.62974 -12.60291 -12.45264 -12.21944 -12.09164 -11.94166 -11.78206 -11.51639 -11.25613 -11.09916 -10.82930 -10.72364 -10.51426 -9.74102 -9.58604 -9.24792 -8.13479 -6.26614 1.20770 1.47598 1.50622 1.54362 1.59760 1.79619 1.88200 2.46161 2.54822 2.96224 3.14561 3.32369 3.43081 3.51136 3.75246 3.87579 4.02685 4.13560 4.17434 4.18742 4.29233 4.30054 4.33407 4.34991 4.43448 4.52961 4.54414 4.59203 4.63239 4.63604 4.65724 4.71301 4.74806 4.86748 4.92760 4.96331 4.98267 5.01620 5.03348 5.12405 5.18689 5.32306 5.35565 5.55864 5.80180 5.95185 6.13780 6.21361 6.47813 6.80525 6.82805 7.05758 7.16981 7.42884 8.95803 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007839 B = 0.005510 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3570.962392 B = 5080.171638 C = 7412.803267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.557 5.557 4 C 0.026 3.974 5 C 0.055 3.945 6 C 0.527 3.473 7 O -0.563 6.563 8 N -0.585 5.585 9 C 0.089 3.911 10 C -0.090 4.090 11 C -0.098 4.098 12 H 0.137 0.863 13 C -0.116 4.116 14 C 0.020 3.980 15 C 0.564 3.436 16 O -0.598 6.598 17 N -0.635 5.635 18 C 0.129 3.871 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.068 0.932 22 C 0.026 3.974 23 N -0.911 5.911 24 Si 0.959 3.041 25 H -0.267 1.267 26 H -0.289 1.289 27 H -0.270 1.270 28 C 0.101 3.899 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.021 0.979 48 H 0.264 0.736 49 H 0.043 0.957 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -5.684 15.614 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.282 5.282 4 C -0.122 4.122 5 C -0.076 4.076 6 C 0.317 3.683 7 O -0.441 6.441 8 N -0.321 5.321 9 C -0.032 4.032 10 C -0.128 4.128 11 C -0.117 4.117 12 H 0.154 0.846 13 C -0.155 4.155 14 C -0.070 4.070 15 C 0.354 3.646 16 O -0.480 6.480 17 N -0.367 5.367 18 C 0.007 3.993 19 C 0.007 3.993 20 C -0.567 4.567 21 H 0.086 0.914 22 C -0.175 4.175 23 N -0.548 5.548 24 Si 0.784 3.216 25 H -0.192 1.192 26 H -0.214 1.214 27 H -0.195 1.195 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.143 0.857 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.133 0.867 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.167 -4.449 15.440 18.025 hybrid contribution -0.273 -0.366 -0.630 0.778 sum 7.894 -4.815 14.810 17.460 Atomic orbital electron populations 1.21769 0.94348 1.02421 1.01694 1.22126 0.96752 0.86838 1.01438 1.61480 1.12115 1.17661 1.36988 1.22462 1.01912 0.99232 0.88557 1.21895 0.89968 0.91821 1.03890 1.20912 0.80143 0.91919 0.75289 1.90673 1.51592 1.50125 1.51687 1.48394 1.06700 1.08049 1.68934 1.23095 0.84139 0.93343 1.02624 1.22439 0.99786 0.89113 1.01440 1.24080 0.88097 0.98757 1.00799 0.84554 1.23420 0.98504 0.97452 0.96098 1.21459 1.01010 0.90983 0.93522 1.19609 0.76018 0.85025 0.83989 1.90593 1.55385 1.16531 1.85481 1.49840 1.66996 1.11033 1.08787 1.23322 1.00186 0.78620 0.97196 1.20186 0.93468 0.90732 0.94897 1.21115 1.32826 1.00236 1.02565 0.91434 1.25751 0.93957 0.98718 0.99121 1.70100 1.33464 1.17139 1.34105 0.85544 0.77819 0.78431 0.79763 1.19231 1.21446 1.19482 1.23319 0.99138 0.99438 0.80262 0.92063 0.94186 0.90237 0.91219 0.92580 0.92560 0.90699 0.94096 0.88562 0.87779 0.86499 0.90640 0.85703 0.88192 0.87841 0.86710 0.89526 0.92774 0.96110 0.92665 0.93812 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.84 71.98 0.71 -2.61 16 2 C 0.06 1.34 5.68 86.30 0.49 1.83 16 3 N -0.56 -16.94 4.50 -927.07 -4.17 -21.11 16 4 C 0.03 0.70 9.01 127.69 1.15 1.86 16 5 C 0.05 1.53 4.49 85.56 0.38 1.92 16 6 C 0.53 18.62 6.83 87.66 0.60 19.22 16 7 O -0.56 -25.84 14.72 -3.03 -0.04 -25.89 16 8 N -0.59 -17.34 1.81 -767.52 -1.39 -18.73 16 9 C 0.09 1.65 6.50 86.59 0.56 2.21 16 10 C -0.09 -1.17 6.84 31.66 0.22 -0.96 16 11 C -0.10 -2.07 6.95 -9.94 -0.07 -2.14 16 12 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 13 C -0.12 -3.07 9.79 30.60 0.30 -2.77 16 14 C 0.02 0.66 2.34 3.02 0.01 0.67 16 15 C 0.56 24.85 7.95 87.66 0.70 25.55 16 16 O -0.60 -30.33 17.29 -3.04 -0.05 -30.39 16 17 N -0.63 -28.22 3.69 -857.74 -3.16 -31.38 16 18 C 0.13 5.55 6.70 83.27 0.56 6.11 16 19 C 0.03 1.34 3.80 -11.12 -0.04 1.30 16 20 C -0.53 -27.24 8.82 25.60 0.23 -27.01 16 21 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 22 C 0.03 1.32 5.46 84.66 0.46 1.78 16 23 N -0.91 -49.60 13.26 21.45 0.28 -49.31 16 24 Si 0.96 40.35 29.54 68.60 2.03 42.38 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 C 0.10 4.59 8.18 83.18 0.68 5.27 16 29 H 0.06 1.28 6.47 -2.39 -0.02 1.26 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 1.82 7.93 -2.38 -0.02 1.80 16 33 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.06 1.88 5.88 -2.38 -0.01 1.87 16 35 H 0.07 1.88 6.30 -2.39 -0.02 1.86 16 36 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 1.87 7.75 -2.39 -0.02 1.85 16 38 H 0.10 3.05 7.93 -2.39 -0.02 3.03 16 39 H 0.12 1.44 7.23 -2.39 -0.02 1.42 16 40 H 0.08 1.55 7.19 -2.38 -0.02 1.54 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 2.97 7.88 -2.39 -0.02 2.95 16 44 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.09 3.43 8.10 -2.39 -0.02 3.41 16 46 H 0.05 2.36 5.99 -2.39 -0.01 2.34 16 47 H 0.02 1.23 8.11 -2.39 -0.02 1.21 16 48 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 49 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.09 3.88 8.10 -2.39 -0.02 3.86 16 Total: -1.00 -77.32 399.54 1.35 -75.97 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.93 Total: 26.24 kcal Atomic # 6 Polarization: 25.29 SS G_CDS: 6.93 Total: 32.22 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -8.44 Total: -120.53 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -0.10 Total: -56.28 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -77.32 1.35 -75.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271366083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.317 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds