Wall clock time and date at job start Tue Mar 31 2020 19:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46640 * 2 1 4 4 C 1.46903 * 110.99860 * 293.94816 * 3 2 1 5 5 C 1.46899 * 110.99701 * 170.00103 * 3 2 1 6 6 C 1.50699 * 109.47176 * 200.50342 * 5 3 2 7 7 O 1.21286 * 120.00026 * 356.86068 * 6 5 3 8 8 N 1.34776 * 120.00160 * 176.86119 * 6 5 3 9 9 C 1.48628 * 127.21574 * 5.96605 * 8 6 5 10 10 C 1.54957 * 103.01940 * 218.99120 * 9 8 6 11 11 C 1.54702 * 102.69963 * 322.05089 * 10 9 8 12 12 H 1.08997 * 118.16433 * 162.86754 * 11 10 9 13 13 C 1.53124 * 117.55314 * 319.11828 * 11 10 9 14 14 C 1.47388 * 126.94456 * 185.07696 * 8 6 5 15 15 C 1.50694 * 117.18241 * 15.70367 * 14 8 6 16 16 O 1.21279 * 120.00639 * 235.62010 * 15 14 8 17 17 N 1.34779 * 120.00020 * 55.61770 * 15 14 8 18 18 C 1.47580 * 134.49409 * 175.47985 * 17 15 14 19 19 C 1.53946 * 86.11778 * 155.36172 * 18 17 15 20 20 C 1.50701 * 113.74175 * 137.94825 * 19 18 17 21 21 H 1.08001 * 119.99876 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99890 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00263 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99626 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47369 * 60.00671 * 24 22 20 26 26 H 1.48495 * 109.47577 * 299.99867 * 24 22 20 27 27 H 1.48504 * 109.47211 * 180.02562 * 24 22 20 28 28 C 1.47582 * 134.49055 * 355.48303 * 17 15 14 29 29 H 1.08991 * 109.47263 * 300.00053 * 1 2 3 30 30 H 1.09001 * 109.47101 * 60.00840 * 1 2 3 31 31 H 1.09005 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47263 * 239.99947 * 2 1 3 33 33 H 1.08996 * 109.46741 * 119.99455 * 2 1 3 34 34 H 1.08999 * 109.47189 * 301.61987 * 4 3 2 35 35 H 1.09004 * 109.46702 * 61.61678 * 4 3 2 36 36 H 1.08999 * 109.47076 * 181.61458 * 4 3 2 37 37 H 1.09003 * 109.47433 * 80.50262 * 5 3 2 38 38 H 1.09004 * 109.47208 * 320.50386 * 5 3 2 39 39 H 1.09008 * 111.11461 * 100.46631 * 9 8 6 40 40 H 1.08998 * 110.57303 * 337.26730 * 9 8 6 41 41 H 1.09000 * 110.76436 * 203.74590 * 10 9 8 42 42 H 1.08998 * 110.92541 * 80.42539 * 10 9 8 43 43 H 1.08995 * 117.45613 * 344.37891 * 13 11 10 44 44 H 1.09002 * 117.45580 * 199.60165 * 13 11 10 45 45 H 1.08996 * 113.77367 * 41.06037 * 18 17 15 46 46 H 1.09000 * 113.77064 * 269.65955 * 18 17 15 47 47 H 1.08992 * 113.74612 * 269.15272 * 19 18 17 48 48 H 0.96998 * 119.99677 * 359.97438 * 23 22 20 49 49 H 1.09009 * 113.76746 * 90.33721 * 28 17 15 50 50 H 1.08992 * 113.77309 * 318.94224 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 -1.2534 5 6 3.4684 1.4312 0.2381 6 6 3.8537 2.8037 0.7269 7 8 3.0148 3.6758 0.8091 8 7 5.1305 3.0622 1.0725 9 6 6.3028 2.1613 0.9209 10 6 7.1090 2.4159 2.2195 11 6 6.9336 3.9376 2.4358 12 1 7.1559 4.3462 3.4216 13 6 7.0096 4.8418 1.2024 14 6 5.6537 4.3070 1.6633 15 6 4.6494 5.2674 2.2465 16 8 4.6153 6.4170 1.8617 17 7 3.7891 4.8487 3.1957 18 6 2.7626 5.5092 4.0252 19 6 2.1001 4.1231 4.1237 20 6 1.5902 3.7909 5.5024 21 1 1.7076 4.5014 6.3072 22 6 0.9728 2.5803 5.7359 23 7 0.8294 1.7154 4.7557 24 14 0.3401 2.1690 7.4447 25 1 -0.6747 3.1736 7.8520 26 1 1.4696 2.1874 8.4085 27 1 -0.2771 0.8183 7.4321 28 6 3.4952 3.5456 3.8231 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.0963 1.5209 -2.0951 35 1 0.5857 2.1045 -1.3563 36 1 2.0692 3.0811 -1.2387 37 1 3.9964 1.2148 -0.6906 38 1 3.7369 0.6892 0.9901 39 1 6.8923 2.4281 0.0436 40 1 5.9818 1.1211 0.8651 41 1 8.1600 2.1643 2.0775 42 1 6.6887 1.8559 3.0548 43 1 7.4347 4.4169 0.2932 44 1 7.2146 5.8997 1.3666 45 1 2.1661 6.2437 3.4840 46 1 3.1406 5.8840 4.9764 47 1 1.3659 3.9309 3.3414 48 1 1.1576 1.9293 3.8683 49 1 4.0886 3.3436 4.7150 50 1 3.4837 2.7124 3.1206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271366087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:54 Heat of formation + Delta-G solvation = 24.596878 kcal Electronic energy + Delta-G solvation = -31677.916190 eV Core-core repulsion = 27708.362151 eV Total energy + Delta-G solvation = -3969.554039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98373 -38.88861 -38.52671 -36.85572 -36.61434 -33.04377 -32.69931 -30.89522 -30.46913 -28.77709 -28.00785 -25.36151 -25.20895 -24.76340 -24.26460 -22.71480 -21.31831 -20.79777 -20.07205 -19.45948 -17.81485 -17.21214 -16.69637 -16.30720 -16.14786 -15.62289 -15.46111 -14.95313 -14.76875 -14.64181 -14.25439 -13.85896 -13.77017 -13.65107 -13.30620 -13.03079 -12.89068 -12.71905 -12.38125 -12.18137 -12.01193 -11.84044 -11.77674 -11.55686 -11.55458 -11.39168 -11.31387 -11.25119 -10.87160 -10.78249 -10.70559 -10.58206 -10.39230 -10.11189 -9.55790 -9.47441 -9.26810 -8.51912 -8.41049 -8.38072 -8.20945 -7.73020 -6.36337 -4.08828 2.48534 2.78351 3.26559 3.42840 3.44753 3.46911 3.63424 3.81806 3.98753 4.27638 4.44378 4.52812 4.71344 4.79400 4.81439 4.88566 5.02231 5.10007 5.17440 5.25165 5.30157 5.32859 5.39587 5.50459 5.54433 5.57869 5.59648 5.60408 5.71352 5.90053 5.90681 5.99058 6.04377 6.07525 6.15093 6.20776 6.26732 6.30823 6.45059 6.46979 6.55783 6.68527 6.79747 6.99187 7.12915 7.55440 7.58734 8.17415 8.40552 8.42253 8.57454 8.80295 8.89092 9.64368 11.03432 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.005811 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3425.107080 B = 4816.972893 C = 6866.791076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 N -0.519 5.519 4 C 0.027 3.973 5 C 0.049 3.951 6 C 0.526 3.474 7 O -0.481 6.481 8 N -0.592 5.592 9 C 0.096 3.904 10 C -0.103 4.103 11 C -0.162 4.162 12 H 0.123 0.877 13 C -0.128 4.128 14 C 0.072 3.928 15 C 0.579 3.421 16 O -0.561 6.561 17 N -0.614 5.614 18 C 0.112 3.888 19 C 0.023 3.977 20 C -0.598 4.598 21 H 0.053 0.947 22 C 0.026 3.974 23 N -0.901 5.901 24 Si 1.066 2.934 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.108 3.892 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.275 0.725 49 H 0.069 0.931 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.682 -6.268 -9.955 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.070 4.070 3 N -0.243 5.243 4 C -0.121 4.121 5 C -0.083 4.083 6 C 0.314 3.686 7 O -0.351 6.351 8 N -0.330 5.330 9 C -0.027 4.027 10 C -0.141 4.141 11 C -0.182 4.182 12 H 0.141 0.859 13 C -0.167 4.167 14 C -0.017 4.017 15 C 0.366 3.634 16 O -0.441 6.441 17 N -0.345 5.345 18 C -0.010 4.010 19 C 0.003 3.997 20 C -0.636 4.636 21 H 0.071 0.929 22 C -0.181 4.181 23 N -0.536 5.536 24 Si 0.895 3.105 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.208 1.208 28 C -0.015 4.015 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.133 0.867 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.099 -6.113 -9.028 14.861 hybrid contribution 1.442 0.683 -1.585 2.249 sum 11.540 -5.430 -10.613 16.592 Atomic orbital electron populations 1.21779 0.94357 1.01430 1.03051 1.22113 0.96855 0.87704 1.00373 1.61464 1.10877 1.16119 1.35835 1.22457 1.02115 0.99407 0.88088 1.21858 0.90400 0.94936 1.01094 1.20352 0.79994 0.90585 0.77692 1.90824 1.47686 1.46705 1.49906 1.48452 1.07019 1.13405 1.64108 1.22696 0.86871 0.94797 0.98347 1.22288 1.00564 0.93413 0.97830 1.23779 1.00941 0.95297 0.98149 0.85872 1.23310 0.95405 1.00330 0.97671 1.21388 0.88487 0.89770 1.02090 1.18392 0.79372 0.86260 0.79398 1.90620 1.71482 1.19578 1.62376 1.50019 1.34980 1.13886 1.35640 1.23348 0.86782 0.99056 0.91782 1.20554 0.91475 0.89292 0.98337 1.21825 1.42695 1.05052 0.94066 0.92901 1.25784 0.94342 0.92935 1.05008 1.70729 1.43565 1.36613 1.02645 0.83580 0.76407 0.76245 0.74279 1.21425 1.21530 1.20830 1.23698 0.98846 0.84990 0.93977 0.90815 0.92998 0.92397 0.95419 0.90414 0.96395 0.90883 0.90769 0.92216 0.88040 0.90619 0.89485 0.89512 0.89528 0.88064 0.86651 0.92163 0.90925 0.92351 0.91374 0.91325 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.84 37.16 0.37 -1.56 16 2 C 0.06 0.73 5.66 -3.82 -0.02 0.71 16 3 N -0.52 -7.96 4.33 -244.37 -1.06 -9.02 16 4 C 0.03 0.38 8.93 60.07 0.54 0.92 16 5 C 0.05 0.67 4.41 -4.98 -0.02 0.64 16 6 C 0.53 9.15 5.56 -10.99 -0.06 9.09 16 7 O -0.48 -10.72 12.79 5.55 0.07 -10.64 16 8 N -0.59 -8.90 3.13 -156.07 -0.49 -9.39 16 9 C 0.10 0.93 6.55 -1.83 -0.01 0.92 16 10 C -0.10 -0.97 7.01 -24.80 -0.17 -1.15 16 11 C -0.16 -2.02 7.06 -89.14 -0.63 -2.65 16 12 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 13 C -0.13 -1.65 9.45 -26.73 -0.25 -1.90 16 14 C 0.07 1.21 3.00 -132.04 -0.40 0.81 16 15 C 0.58 12.70 6.01 -10.99 -0.07 12.63 16 16 O -0.56 -13.97 17.59 5.56 0.10 -13.87 16 17 N -0.61 -13.90 2.92 -178.42 -0.52 -14.42 16 18 C 0.11 2.63 8.39 -2.97 -0.02 2.61 16 19 C 0.02 0.58 3.09 -90.84 -0.28 0.30 16 20 C -0.60 -16.26 8.77 -34.44 -0.30 -16.56 16 21 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 22 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 23 N -0.90 -25.97 13.65 55.43 0.76 -25.21 16 24 Si 1.07 24.28 29.90 -169.99 -5.08 19.20 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 C 0.11 2.46 7.44 -2.97 -0.02 2.43 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.63 6.59 -51.93 -0.34 0.28 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.30 8.11 -51.93 -0.42 -0.12 16 33 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 34 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 35 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 36 H 0.07 1.21 6.69 -51.93 -0.35 0.86 16 37 H 0.06 0.65 7.99 -51.93 -0.41 0.24 16 38 H 0.10 1.27 7.53 -51.93 -0.39 0.87 16 39 H 0.08 0.60 7.28 -51.92 -0.38 0.22 16 40 H 0.09 0.67 7.24 -51.93 -0.38 0.29 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 1.04 7.14 -51.93 -0.37 0.67 16 44 H 0.12 1.54 8.12 -51.93 -0.42 1.12 16 45 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.07 1.61 8.09 -51.93 -0.42 1.19 16 47 H 0.06 1.68 7.61 -51.93 -0.40 1.29 16 48 H 0.28 8.06 7.04 -40.82 -0.29 7.77 16 49 H 0.07 1.55 8.09 -51.92 -0.42 1.13 16 50 H 0.05 1.25 5.98 -51.93 -0.31 0.94 16 LS Contribution 394.93 15.07 5.95 5.95 Total: -1.00 -34.95 394.93 -9.94 -44.89 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -8.21 Total: 4.67 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.46 Total: 7.84 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -1.31 Total: -58.04 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.17 Total: -24.52 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.95 -9.94 -44.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271366087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.489 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds