Wall clock time and date at job start Tue Mar 31 2020 19:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46640 * 2 1 4 4 C 1.46903 * 110.99860 * 293.94816 * 3 2 1 5 5 C 1.46899 * 110.99701 * 170.00103 * 3 2 1 6 6 C 1.50699 * 109.47176 * 200.50342 * 5 3 2 7 7 O 1.21286 * 120.00026 * 356.86068 * 6 5 3 8 8 N 1.34776 * 120.00160 * 176.86119 * 6 5 3 9 9 C 1.48628 * 127.21574 * 5.96605 * 8 6 5 10 10 C 1.54957 * 103.01940 * 218.99120 * 9 8 6 11 11 C 1.54702 * 102.69963 * 322.05089 * 10 9 8 12 12 H 1.08997 * 118.16433 * 162.86754 * 11 10 9 13 13 C 1.53124 * 117.55314 * 319.11828 * 11 10 9 14 14 C 1.47388 * 126.94456 * 185.07696 * 8 6 5 15 15 C 1.50694 * 117.18241 * 15.70367 * 14 8 6 16 16 O 1.21279 * 120.00639 * 235.62010 * 15 14 8 17 17 N 1.34779 * 120.00020 * 55.61770 * 15 14 8 18 18 C 1.47580 * 134.49409 * 175.47985 * 17 15 14 19 19 C 1.53946 * 86.11778 * 155.36172 * 18 17 15 20 20 C 1.50701 * 113.74175 * 137.94825 * 19 18 17 21 21 H 1.08001 * 119.99876 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99890 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00263 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99626 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47369 * 60.00671 * 24 22 20 26 26 H 1.48495 * 109.47577 * 299.99867 * 24 22 20 27 27 H 1.48504 * 109.47211 * 180.02562 * 24 22 20 28 28 C 1.47582 * 134.49055 * 355.48303 * 17 15 14 29 29 H 1.08991 * 109.47263 * 300.00053 * 1 2 3 30 30 H 1.09001 * 109.47101 * 60.00840 * 1 2 3 31 31 H 1.09005 * 109.46822 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47263 * 239.99947 * 2 1 3 33 33 H 1.08996 * 109.46741 * 119.99455 * 2 1 3 34 34 H 1.08999 * 109.47189 * 301.61987 * 4 3 2 35 35 H 1.09004 * 109.46702 * 61.61678 * 4 3 2 36 36 H 1.08999 * 109.47076 * 181.61458 * 4 3 2 37 37 H 1.09003 * 109.47433 * 80.50262 * 5 3 2 38 38 H 1.09004 * 109.47208 * 320.50386 * 5 3 2 39 39 H 1.09008 * 111.11461 * 100.46631 * 9 8 6 40 40 H 1.08998 * 110.57303 * 337.26730 * 9 8 6 41 41 H 1.09000 * 110.76436 * 203.74590 * 10 9 8 42 42 H 1.08998 * 110.92541 * 80.42539 * 10 9 8 43 43 H 1.08995 * 117.45613 * 344.37891 * 13 11 10 44 44 H 1.09002 * 117.45580 * 199.60165 * 13 11 10 45 45 H 1.08996 * 113.77367 * 41.06037 * 18 17 15 46 46 H 1.09000 * 113.77064 * 269.65955 * 18 17 15 47 47 H 1.08992 * 113.74612 * 269.15272 * 19 18 17 48 48 H 0.96998 * 119.99677 * 359.97438 * 23 22 20 49 49 H 1.09009 * 113.76746 * 90.33721 * 28 17 15 50 50 H 1.08992 * 113.77309 * 318.94224 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 -1.2534 5 6 3.4684 1.4312 0.2381 6 6 3.8537 2.8037 0.7269 7 8 3.0148 3.6758 0.8091 8 7 5.1305 3.0622 1.0725 9 6 6.3028 2.1613 0.9209 10 6 7.1090 2.4159 2.2195 11 6 6.9336 3.9376 2.4358 12 1 7.1559 4.3462 3.4216 13 6 7.0096 4.8418 1.2024 14 6 5.6537 4.3070 1.6633 15 6 4.6494 5.2674 2.2465 16 8 4.6153 6.4170 1.8617 17 7 3.7891 4.8487 3.1957 18 6 2.7626 5.5092 4.0252 19 6 2.1001 4.1231 4.1237 20 6 1.5902 3.7909 5.5024 21 1 1.7076 4.5014 6.3072 22 6 0.9728 2.5803 5.7359 23 7 0.8294 1.7154 4.7557 24 14 0.3401 2.1690 7.4447 25 1 -0.6747 3.1736 7.8520 26 1 1.4696 2.1874 8.4085 27 1 -0.2771 0.8183 7.4321 28 6 3.4952 3.5456 3.8231 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.0963 1.5209 -2.0951 35 1 0.5857 2.1045 -1.3563 36 1 2.0692 3.0811 -1.2387 37 1 3.9964 1.2148 -0.6906 38 1 3.7369 0.6892 0.9901 39 1 6.8923 2.4281 0.0436 40 1 5.9818 1.1211 0.8651 41 1 8.1600 2.1643 2.0775 42 1 6.6887 1.8559 3.0548 43 1 7.4347 4.4169 0.2932 44 1 7.2146 5.8997 1.3666 45 1 2.1661 6.2437 3.4840 46 1 3.1406 5.8840 4.9764 47 1 1.3659 3.9309 3.3414 48 1 1.1576 1.9293 3.8683 49 1 4.0886 3.3436 4.7150 50 1 3.4837 2.7124 3.1206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271366087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:54 Heat of formation + Delta-G solvation = 0.178682 kcal Electronic energy + Delta-G solvation = -31678.975042 eV Core-core repulsion = 27708.362151 eV Total energy + Delta-G solvation = -3970.612891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22512 -40.50025 -39.85605 -38.53364 -37.90992 -34.80557 -34.18434 -31.94875 -31.58415 -30.48342 -29.11815 -27.15704 -26.84001 -26.30135 -25.24858 -24.16593 -22.67819 -21.92152 -21.52225 -20.72758 -19.31973 -18.97893 -18.43245 -17.64515 -17.33143 -16.86224 -16.72984 -16.50627 -16.18255 -15.93694 -15.60452 -15.45862 -15.18051 -15.03182 -14.62436 -14.21779 -14.08584 -13.83976 -13.78452 -13.68744 -13.50130 -13.31153 -13.10199 -12.95964 -12.88804 -12.80537 -12.64415 -12.47004 -12.44405 -12.14337 -11.89841 -11.82204 -11.71331 -11.67159 -11.46551 -10.97550 -10.85944 -10.53790 -10.44382 -9.64060 -9.51961 -9.24140 -8.58072 -6.31831 1.19492 1.56512 1.59050 1.66424 1.82811 1.85745 1.89524 2.60741 2.64755 2.94385 3.20200 3.24458 3.31583 3.53094 3.70487 3.85520 3.99351 4.03326 4.06800 4.14763 4.20405 4.22567 4.29211 4.32486 4.40646 4.46571 4.49748 4.51522 4.58569 4.59451 4.60750 4.61683 4.72348 4.76551 4.86908 4.88724 4.95782 4.98557 5.03362 5.08391 5.16743 5.23613 5.35749 5.40204 5.94738 6.02751 6.11116 6.19982 6.47725 6.58840 6.81488 7.06717 7.20683 7.49597 8.80285 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.005811 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3425.107080 B = 4816.972893 C = 6866.791076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 N -0.558 5.558 4 C 0.037 3.963 5 C 0.057 3.943 6 C 0.514 3.486 7 O -0.549 6.549 8 N -0.590 5.590 9 C 0.090 3.910 10 C -0.094 4.094 11 C -0.135 4.135 12 H 0.120 0.880 13 C -0.107 4.107 14 C 0.022 3.978 15 C 0.570 3.430 16 O -0.603 6.603 17 N -0.616 5.616 18 C 0.111 3.889 19 C 0.018 3.982 20 C -0.611 4.611 21 H 0.055 0.945 22 C -0.020 4.020 23 N -0.918 5.918 24 Si 1.116 2.884 25 H -0.277 1.277 26 H -0.266 1.266 27 H -0.284 1.284 28 C 0.136 3.864 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.013 0.987 48 H 0.259 0.741 49 H 0.075 0.925 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.797 -8.906 -10.131 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 N -0.283 5.283 4 C -0.111 4.111 5 C -0.074 4.074 6 C 0.303 3.697 7 O -0.424 6.424 8 N -0.326 5.326 9 C -0.030 4.030 10 C -0.132 4.132 11 C -0.155 4.155 12 H 0.138 0.862 13 C -0.145 4.145 14 C -0.067 4.067 15 C 0.360 3.640 16 O -0.485 6.485 17 N -0.347 5.347 18 C -0.011 4.011 19 C -0.002 4.002 20 C -0.649 4.649 21 H 0.073 0.927 22 C -0.220 4.220 23 N -0.553 5.553 24 Si 0.937 3.063 25 H -0.203 1.203 26 H -0.191 1.191 27 H -0.209 1.209 28 C 0.014 3.986 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.031 0.969 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.291 -8.773 -9.217 18.400 hybrid contribution 0.471 1.606 -1.563 2.290 sum 13.762 -7.168 -10.780 18.894 Atomic orbital electron populations 1.21755 0.95068 1.02254 1.01259 1.22107 0.96245 0.86684 1.01573 1.61346 1.12455 1.17687 1.36828 1.22301 1.01754 0.98147 0.88905 1.21876 0.89844 0.92740 1.02907 1.21159 0.80205 0.91379 0.76965 1.90798 1.49851 1.48758 1.53040 1.48574 1.07745 1.13583 1.62739 1.23159 0.85050 0.95212 0.99596 1.22387 1.03022 0.90316 0.97459 1.24030 0.95974 0.97586 0.97929 0.86214 1.23425 0.91535 1.00237 0.99327 1.21382 0.88450 0.90732 1.06180 1.19385 0.79516 0.86900 0.78199 1.90571 1.72889 1.21858 1.63222 1.49982 1.35362 1.13286 1.36094 1.23246 0.87387 0.97801 0.92675 1.20359 0.92035 0.91234 0.96535 1.22080 1.43027 1.05300 0.94479 0.92720 1.27227 0.94024 0.92870 1.07925 1.70852 1.44743 1.37295 1.02402 0.82946 0.76812 0.76085 0.70416 1.20311 1.19145 1.20910 1.23262 0.96634 0.84875 0.93852 0.94994 0.92350 0.90215 0.92179 0.90893 0.93361 0.91479 0.93820 0.88515 0.86707 0.87686 0.86879 0.85254 0.90162 0.84598 0.87736 0.93594 0.89419 0.96898 0.93069 0.90721 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.84 71.98 0.71 -3.11 16 2 C 0.06 1.50 5.66 86.30 0.49 1.99 16 3 N -0.56 -17.17 4.33 -927.04 -4.02 -21.19 16 4 C 0.04 1.05 8.93 127.69 1.14 2.19 16 5 C 0.06 1.48 4.41 85.56 0.38 1.86 16 6 C 0.51 17.93 5.56 87.66 0.49 18.42 16 7 O -0.55 -25.98 12.79 -3.05 -0.04 -26.02 16 8 N -0.59 -16.77 3.13 -766.07 -2.40 -19.17 16 9 C 0.09 1.33 6.55 86.64 0.57 1.89 16 10 C -0.09 -1.33 7.01 31.84 0.22 -1.11 16 11 C -0.14 -2.99 7.06 -9.83 -0.07 -3.06 16 12 H 0.12 2.73 8.14 -2.39 -0.02 2.72 16 13 C -0.11 -2.45 9.45 30.59 0.29 -2.16 16 14 C 0.02 0.72 3.00 2.98 0.01 0.73 16 15 C 0.57 25.88 6.01 87.65 0.53 26.41 16 16 O -0.60 -31.49 17.59 -3.03 -0.05 -31.54 16 17 N -0.62 -29.16 2.92 -836.79 -2.44 -31.60 16 18 C 0.11 5.53 8.39 86.48 0.73 6.26 16 19 C 0.02 0.96 3.09 -10.88 -0.03 0.92 16 20 C -0.61 -34.11 8.77 25.60 0.22 -33.89 16 21 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 22 C -0.02 -1.10 5.46 84.66 0.46 -0.64 16 23 N -0.92 -54.45 13.65 21.45 0.29 -54.16 16 24 Si 1.12 48.64 29.90 68.60 2.05 50.70 16 25 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 C 0.14 6.44 7.44 86.48 0.64 7.08 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.42 6.59 -2.39 -0.02 1.40 16 31 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 33 H 0.07 1.85 7.82 -2.39 -0.02 1.83 16 34 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 35 H 0.07 1.91 6.55 -2.38 -0.02 1.89 16 36 H 0.04 1.50 6.69 -2.39 -0.02 1.48 16 37 H 0.10 1.77 7.99 -2.39 -0.02 1.75 16 38 H 0.11 2.61 7.53 -2.39 -0.02 2.60 16 39 H 0.11 1.01 7.28 -2.38 -0.02 0.99 16 40 H 0.11 1.13 7.24 -2.39 -0.02 1.11 16 41 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.14 2.16 7.14 -2.39 -0.02 2.14 16 44 H 0.10 2.64 8.12 -2.39 -0.02 2.62 16 45 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.09 4.04 8.09 -2.39 -0.02 4.02 16 47 H 0.01 0.81 7.61 -2.39 -0.02 0.79 16 48 H 0.26 16.01 7.04 -92.71 -0.65 15.36 16 49 H 0.07 3.41 8.09 -2.38 -0.02 3.39 16 50 H 0.05 2.46 5.98 -2.39 -0.01 2.45 16 Total: -1.00 -84.04 394.93 1.21 -82.84 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 1.04 Total: 26.37 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 6.77 Total: 23.77 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -8.57 Total: -126.12 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -0.09 Total: -57.56 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.05 Total: 50.70 kcal Total: -84.04 1.21 -82.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271366087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.017 kcal (2) G-P(sol) polarization free energy of solvation -84.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds