Wall clock time and date at job start Tue Mar 31 2020 18:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47417 * 2 1 4 4 C 1.50696 * 109.47307 * 119.99963 * 2 1 3 5 5 O 1.21280 * 120.00467 * 103.99214 * 4 2 1 6 6 N 1.34783 * 120.00044 * 283.99437 * 4 2 1 7 7 C 1.47726 * 134.39589 * 180.02562 * 6 4 2 8 8 C 1.53285 * 85.85456 * 155.92468 * 7 6 4 9 9 C 1.52323 * 128.81659 * 243.37324 * 8 7 6 10 10 C 1.52332 * 128.81523 * 163.01086 * 8 7 6 11 11 H 1.09004 * 117.51746 * 10.46382 * 10 8 7 12 12 C 1.50694 * 117.51829 * 225.32926 * 10 8 7 13 13 O 1.21287 * 119.99836 * 0.02562 * 12 10 8 14 14 N 1.34779 * 120.00078 * 180.02562 * 12 10 8 15 15 C 1.47067 * 136.05566 * 359.63670 * 14 12 10 16 16 C 1.53748 * 87.88470 * 152.96213 * 15 14 12 17 17 C 1.50699 * 114.26821 * 139.79258 * 16 15 14 18 18 H 1.08006 * 120.00226 * 266.47165 * 17 16 15 19 19 C 1.37874 * 120.00214 * 86.47150 * 17 16 15 20 20 N 1.31513 * 119.99977 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00247 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47081 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46902 * 119.99942 * 21 19 17 24 24 H 1.48493 * 109.47363 * 240.00019 * 21 19 17 25 25 C 1.47064 * 136.05507 * 180.02562 * 14 12 10 26 26 C 1.47718 * 134.39319 * 0.02916 * 6 4 2 27 27 N 1.46897 * 109.47174 * 239.99909 * 2 1 3 28 28 C 1.46904 * 110.99924 * 312.12061 * 27 2 1 29 29 C 1.46903 * 111.00206 * 76.07343 * 27 2 1 30 30 H 1.08997 * 109.47399 * 60.00020 * 1 2 3 31 31 H 1.09003 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47115 * 299.99914 * 1 2 3 33 33 H 1.09000 * 113.81035 * 41.68677 * 7 6 4 34 34 H 1.09001 * 113.80823 * 270.16032 * 7 6 4 35 35 H 1.09003 * 117.51934 * 134.66423 * 9 8 7 36 36 H 1.09005 * 117.51925 * 349.54662 * 9 8 7 37 37 H 1.09005 * 113.46262 * 267.68825 * 15 14 12 38 38 H 1.08997 * 113.46766 * 38.12962 * 15 14 12 39 39 H 1.08997 * 114.39711 * 272.67199 * 16 15 14 40 40 H 0.97002 * 120.00392 * 179.97438 * 20 19 17 41 41 H 1.09002 * 113.46748 * 321.86350 * 25 14 12 42 42 H 1.08998 * 113.46831 * 92.24737 * 25 14 12 43 43 H 1.08994 * 113.81558 * 89.83641 * 26 6 4 44 44 H 1.09000 * 113.80988 * 318.30466 * 26 6 4 45 45 H 1.08998 * 109.47028 * 60.00543 * 28 27 2 46 46 H 1.09003 * 109.46683 * 179.97438 * 28 27 2 47 47 H 1.08998 * 109.47272 * 299.99955 * 28 27 2 48 48 H 1.09008 * 109.46564 * 54.57296 * 29 27 2 49 49 H 1.08998 * 109.47071 * 174.57047 * 29 27 2 50 50 H 1.08997 * 109.47142 * 294.57307 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4740 -1.8365 1.1427 6 7 1.9909 -0.0942 2.4285 7 6 2.3846 -0.4747 3.8005 8 6 2.5012 1.0306 4.0652 9 6 3.7364 1.8425 4.4329 10 6 2.5507 1.7644 5.3992 11 1 2.6742 1.1636 6.3003 12 6 1.6930 2.9943 5.5495 13 8 0.9975 3.3650 4.6276 14 7 1.6987 3.6824 6.7085 15 6 2.3717 3.5583 8.0102 16 6 2.2322 5.0818 8.1634 17 6 1.8670 5.5337 9.5539 18 1 0.8310 5.6894 9.8165 19 6 2.8554 5.7484 10.4909 20 7 4.1170 5.5592 10.1710 21 14 2.4027 6.3078 12.2147 22 1 0.9278 6.4459 12.3189 23 1 2.8764 5.3040 13.2012 24 1 3.0440 7.6176 12.4944 25 6 1.0296 4.8836 7.2300 26 6 1.5336 1.2311 2.8936 27 7 2.0197 -0.6925 -1.1994 28 6 1.3279 -1.9750 -1.3861 29 6 1.8840 0.1571 -2.3901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.3349 -1.0060 3.8543 34 1 1.5906 -0.9611 4.3672 35 1 3.8957 2.7835 3.9061 36 1 4.6396 1.2931 4.6984 37 1 1.7963 2.9939 8.7442 38 1 3.4053 3.2210 7.9342 39 1 3.0489 5.6550 7.7248 40 1 4.8124 5.7106 10.8301 41 1 0.9199 5.6756 6.4891 42 1 0.1004 4.6684 7.7575 43 1 0.4846 1.2561 3.1886 44 1 1.8104 2.0501 2.2298 45 1 0.2582 -1.7979 -1.4971 46 1 1.7093 -2.4664 -2.2812 47 1 1.5029 -2.6118 -0.5190 48 1 2.3830 1.1103 -2.2151 49 1 2.3410 -0.3406 -3.2455 50 1 0.8275 0.3319 -2.5933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271779601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:54 Heat of formation + Delta-G solvation = 51.067210 kcal Electronic energy + Delta-G solvation = -28903.024162 eV Core-core repulsion = 24934.617963 eV Total energy + Delta-G solvation = -3968.406199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90223 -39.73521 -38.83490 -37.28406 -36.71674 -34.50104 -32.74443 -31.41936 -29.44029 -28.08025 -27.64281 -26.46353 -25.73116 -25.49220 -25.03416 -23.24781 -22.01696 -20.50110 -19.42061 -18.73907 -18.07701 -17.27256 -17.10446 -16.60344 -16.23252 -16.02359 -15.46503 -15.25089 -15.00923 -14.74271 -14.59077 -14.37577 -14.06364 -13.93619 -13.52338 -13.21794 -13.15097 -12.84186 -12.57906 -12.45142 -12.31494 -12.17279 -12.05284 -11.95757 -11.80601 -11.60255 -11.56932 -11.37378 -11.02484 -10.98514 -10.85241 -10.71919 -10.41108 -10.30693 -9.67099 -9.65636 -9.27833 -9.05244 -8.81774 -8.64441 -8.57345 -7.95170 -6.23968 -4.29706 2.46595 2.50740 2.86785 3.18958 3.28047 3.30548 3.37462 3.64561 3.80065 4.08227 4.22857 4.29191 4.43910 4.60602 4.72168 4.76784 4.94491 4.99741 5.03162 5.09357 5.15899 5.20464 5.23127 5.27128 5.29849 5.36314 5.43231 5.44492 5.54879 5.59511 5.64786 5.70449 5.73065 5.78332 5.88247 5.90967 5.99738 6.10009 6.19544 6.37086 6.49838 6.59450 6.62255 6.73139 6.74688 7.49335 7.56814 7.73871 8.06919 8.11715 8.42386 8.66705 8.74843 9.37618 10.85710 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033812 B = 0.001933 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.912174 B =14478.993830 C =14788.180158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.103 0.897 4 C 0.549 3.451 5 O -0.531 6.531 6 N -0.645 5.645 7 C 0.151 3.849 8 C -0.151 4.151 9 C -0.111 4.111 10 C -0.153 4.153 11 H 0.126 0.874 12 C 0.560 3.440 13 O -0.565 6.565 14 N -0.638 5.638 15 C 0.097 3.903 16 C 0.035 3.965 17 C -0.518 4.518 18 H 0.064 0.936 19 C 0.068 3.932 20 N -0.885 5.885 21 Si 0.895 3.105 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.100 3.900 26 C 0.158 3.842 27 N -0.526 5.526 28 C 0.014 3.986 29 C 0.023 3.977 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.264 0.736 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.027 0.973 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 -10.708 -17.254 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.121 0.879 4 C 0.337 3.663 5 O -0.407 6.407 6 N -0.381 5.381 7 C 0.029 3.971 8 C -0.153 4.153 9 C -0.148 4.148 10 C -0.174 4.174 11 H 0.144 0.856 12 C 0.350 3.650 13 O -0.446 6.446 14 N -0.370 5.370 15 C -0.025 4.025 16 C 0.016 3.984 17 C -0.556 4.556 18 H 0.082 0.918 19 C -0.135 4.135 20 N -0.522 5.522 21 Si 0.723 3.277 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.022 4.022 26 C 0.036 3.964 27 N -0.250 5.250 28 C -0.134 4.134 29 C -0.125 4.125 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.408 -11.441 -18.062 21.650 hybrid contribution -1.015 0.451 1.054 1.531 sum -4.423 -10.990 -17.008 20.727 Atomic orbital electron populations 1.22351 0.94860 1.03311 1.03440 1.21557 0.94494 0.98683 0.89646 0.87892 1.20009 0.77919 0.85700 0.82632 1.90638 1.46282 1.18688 1.85052 1.49959 1.63297 1.18731 1.06138 1.22588 1.00901 0.93314 0.80322 1.22507 1.01899 0.94816 0.96064 1.22810 0.91244 1.01212 0.99525 1.22120 1.02078 0.98274 0.94960 0.85612 1.18994 0.81892 0.82584 0.81552 1.90611 1.44338 1.69646 1.39980 1.49937 1.45800 1.28957 1.12291 1.23688 0.96003 1.02781 0.80039 1.20389 0.92674 0.90825 0.94523 1.20943 0.93445 1.46480 0.94706 0.91775 1.25031 0.94888 0.94530 0.99095 1.69953 0.99408 1.47936 1.34877 0.86482 0.78817 0.78435 0.83980 1.19554 1.20891 1.20853 1.23364 0.98907 0.84786 0.95101 1.22585 0.98332 0.83980 0.91479 1.61855 1.56829 1.04506 1.01782 1.22643 0.95608 0.91390 1.03730 1.22449 0.99781 0.97654 0.92597 0.91296 0.91346 0.91105 0.89640 0.89169 0.87635 0.87215 0.90759 0.92015 0.91317 0.92640 0.92445 0.90854 0.88552 0.89707 0.95453 0.91643 0.89173 0.91267 0.90939 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.29 37.16 0.31 -1.23 16 2 C 0.07 0.70 2.44 -68.87 -0.17 0.53 16 3 H 0.10 0.97 7.87 -51.93 -0.41 0.56 16 4 C 0.55 7.12 7.23 -10.98 -0.08 7.04 16 5 O -0.53 -8.55 14.98 5.56 0.08 -8.47 16 6 N -0.64 -7.62 3.61 -181.79 -0.66 -8.28 16 7 C 0.15 1.63 8.85 -3.23 -0.03 1.60 16 8 C -0.15 -1.76 3.03 -155.03 -0.47 -2.23 16 9 C -0.11 -1.28 10.24 -27.00 -0.28 -1.56 16 10 C -0.15 -2.04 6.02 -92.03 -0.55 -2.59 16 11 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 12 C 0.56 9.79 7.86 -10.99 -0.09 9.70 16 13 O -0.56 -10.92 15.91 5.55 0.09 -10.84 16 14 N -0.64 -12.00 3.69 -185.04 -0.68 -12.69 16 15 C 0.10 1.91 8.00 -8.37 -0.07 1.84 16 16 C 0.04 0.78 3.79 -91.12 -0.35 0.44 16 17 C -0.52 -12.67 8.83 -34.44 -0.30 -12.97 16 18 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.88 -23.34 13.26 55.43 0.74 -22.60 16 21 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.10 1.98 8.17 -8.49 -0.07 1.91 16 26 C 0.16 1.82 6.83 -3.24 -0.02 1.79 16 27 N -0.53 -5.52 4.73 -244.58 -1.16 -6.67 16 28 C 0.01 0.14 8.53 60.07 0.51 0.65 16 29 C 0.02 0.18 9.37 60.07 0.56 0.74 16 30 H 0.07 0.50 7.06 -51.93 -0.37 0.13 16 31 H 0.07 0.61 6.32 -51.93 -0.33 0.28 16 32 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.68 8.11 -51.93 -0.42 1.26 16 40 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 43 H 0.10 1.14 8.01 -51.93 -0.42 0.72 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.23 6.20 -51.93 -0.32 -0.09 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 1.10 5.91 -51.93 -0.31 0.79 16 48 H 0.07 0.49 7.97 -51.92 -0.41 0.07 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.03 0.19 7.10 -51.93 -0.37 -0.18 16 LS Contribution 406.18 15.07 6.12 6.12 Total: -1.00 -29.68 406.18 -10.05 -39.73 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.38 Total: 1.95 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.19 Total: 7.28 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -1.76 Total: -50.24 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.17 Total: -19.30 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.68 -10.05 -39.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271779601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.794 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds