Wall clock time and date at job start Tue Mar 31 2020 18:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47417 * 2 1 4 4 C 1.50696 * 109.47307 * 119.99963 * 2 1 3 5 5 O 1.21280 * 120.00467 * 103.99214 * 4 2 1 6 6 N 1.34783 * 120.00044 * 283.99437 * 4 2 1 7 7 C 1.47726 * 134.39589 * 180.02562 * 6 4 2 8 8 C 1.53285 * 85.85456 * 155.92468 * 7 6 4 9 9 C 1.52323 * 128.81659 * 243.37324 * 8 7 6 10 10 C 1.52332 * 128.81523 * 163.01086 * 8 7 6 11 11 H 1.09004 * 117.51746 * 10.46382 * 10 8 7 12 12 C 1.50694 * 117.51829 * 225.32926 * 10 8 7 13 13 O 1.21287 * 119.99836 * 0.02562 * 12 10 8 14 14 N 1.34779 * 120.00078 * 180.02562 * 12 10 8 15 15 C 1.47067 * 136.05566 * 359.63670 * 14 12 10 16 16 C 1.53748 * 87.88470 * 152.96213 * 15 14 12 17 17 C 1.50699 * 114.26821 * 139.79258 * 16 15 14 18 18 H 1.08006 * 120.00226 * 266.47165 * 17 16 15 19 19 C 1.37874 * 120.00214 * 86.47150 * 17 16 15 20 20 N 1.31513 * 119.99977 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00247 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47081 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46902 * 119.99942 * 21 19 17 24 24 H 1.48493 * 109.47363 * 240.00019 * 21 19 17 25 25 C 1.47064 * 136.05507 * 180.02562 * 14 12 10 26 26 C 1.47718 * 134.39319 * 0.02916 * 6 4 2 27 27 N 1.46897 * 109.47174 * 239.99909 * 2 1 3 28 28 C 1.46904 * 110.99924 * 312.12061 * 27 2 1 29 29 C 1.46903 * 111.00206 * 76.07343 * 27 2 1 30 30 H 1.08997 * 109.47399 * 60.00020 * 1 2 3 31 31 H 1.09003 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47115 * 299.99914 * 1 2 3 33 33 H 1.09000 * 113.81035 * 41.68677 * 7 6 4 34 34 H 1.09001 * 113.80823 * 270.16032 * 7 6 4 35 35 H 1.09003 * 117.51934 * 134.66423 * 9 8 7 36 36 H 1.09005 * 117.51925 * 349.54662 * 9 8 7 37 37 H 1.09005 * 113.46262 * 267.68825 * 15 14 12 38 38 H 1.08997 * 113.46766 * 38.12962 * 15 14 12 39 39 H 1.08997 * 114.39711 * 272.67199 * 16 15 14 40 40 H 0.97002 * 120.00392 * 179.97438 * 20 19 17 41 41 H 1.09002 * 113.46748 * 321.86350 * 25 14 12 42 42 H 1.08998 * 113.46831 * 92.24737 * 25 14 12 43 43 H 1.08994 * 113.81558 * 89.83641 * 26 6 4 44 44 H 1.09000 * 113.80988 * 318.30466 * 26 6 4 45 45 H 1.08998 * 109.47028 * 60.00543 * 28 27 2 46 46 H 1.09003 * 109.46683 * 179.97438 * 28 27 2 47 47 H 1.08998 * 109.47272 * 299.99955 * 28 27 2 48 48 H 1.09008 * 109.46564 * 54.57296 * 29 27 2 49 49 H 1.08998 * 109.47071 * 174.57047 * 29 27 2 50 50 H 1.08997 * 109.47142 * 294.57307 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4740 -1.8365 1.1427 6 7 1.9909 -0.0942 2.4285 7 6 2.3846 -0.4747 3.8005 8 6 2.5012 1.0306 4.0652 9 6 3.7364 1.8425 4.4329 10 6 2.5507 1.7644 5.3992 11 1 2.6742 1.1636 6.3003 12 6 1.6930 2.9943 5.5495 13 8 0.9975 3.3650 4.6276 14 7 1.6987 3.6824 6.7085 15 6 2.3717 3.5583 8.0102 16 6 2.2322 5.0818 8.1634 17 6 1.8670 5.5337 9.5539 18 1 0.8310 5.6894 9.8165 19 6 2.8554 5.7484 10.4909 20 7 4.1170 5.5592 10.1710 21 14 2.4027 6.3078 12.2147 22 1 0.9278 6.4459 12.3189 23 1 2.8764 5.3040 13.2012 24 1 3.0440 7.6176 12.4944 25 6 1.0296 4.8836 7.2300 26 6 1.5336 1.2311 2.8936 27 7 2.0197 -0.6925 -1.1994 28 6 1.3279 -1.9750 -1.3861 29 6 1.8840 0.1571 -2.3901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.3349 -1.0060 3.8543 34 1 1.5906 -0.9611 4.3672 35 1 3.8957 2.7835 3.9061 36 1 4.6396 1.2931 4.6984 37 1 1.7963 2.9939 8.7442 38 1 3.4053 3.2210 7.9342 39 1 3.0489 5.6550 7.7248 40 1 4.8124 5.7106 10.8301 41 1 0.9199 5.6756 6.4891 42 1 0.1004 4.6684 7.7575 43 1 0.4846 1.2561 3.1886 44 1 1.8104 2.0501 2.2298 45 1 0.2582 -1.7979 -1.4971 46 1 1.7093 -2.4664 -2.2812 47 1 1.5029 -2.6118 -0.5190 48 1 2.3830 1.1103 -2.2151 49 1 2.3410 -0.3406 -3.2455 50 1 0.8275 0.3319 -2.5933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271779601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:54 Heat of formation + Delta-G solvation = 32.747867 kcal Electronic energy + Delta-G solvation = -28903.818549 eV Core-core repulsion = 24934.617963 eV Total energy + Delta-G solvation = -3969.200585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.91381 -40.99763 -39.97900 -38.55535 -37.77089 -35.56253 -34.61610 -32.19489 -31.02280 -28.94184 -28.42023 -27.36247 -27.31545 -26.65502 -26.30691 -24.53773 -22.84088 -21.98053 -20.49750 -19.72367 -19.36340 -18.77678 -18.17873 -17.98278 -17.30245 -17.02071 -16.62008 -16.44448 -16.25693 -16.09776 -15.68540 -15.39721 -15.08695 -14.91529 -14.65944 -14.40185 -14.19154 -14.11486 -13.70414 -13.46181 -13.27955 -13.22321 -13.13173 -13.06794 -12.90239 -12.78519 -12.74152 -12.55899 -12.51378 -12.29510 -12.16046 -11.96248 -11.69950 -11.33108 -11.29025 -11.01535 -10.69094 -10.59904 -10.48041 -9.78598 -9.50570 -9.29873 -8.14837 -6.25208 1.42196 1.47156 1.51439 1.55134 1.61054 1.68899 2.00803 2.47726 2.70555 2.97094 3.07772 3.16270 3.32657 3.46738 3.69142 3.85181 3.89395 3.98668 4.19286 4.29221 4.31811 4.34937 4.40092 4.43827 4.46571 4.52395 4.56579 4.58048 4.59745 4.64038 4.67183 4.70025 4.75247 4.78349 4.85250 4.86114 4.90292 4.94403 4.99180 5.04912 5.05723 5.11912 5.14708 5.63194 5.84670 5.89785 6.05314 6.26295 6.62116 6.83847 6.95578 7.10183 7.21736 7.44962 8.95093 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033812 B = 0.001933 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.912174 B =14478.993830 C =14788.180158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.070 3.930 3 H 0.112 0.888 4 C 0.542 3.458 5 O -0.568 6.568 6 N -0.644 5.644 7 C 0.151 3.849 8 C -0.143 4.143 9 C -0.103 4.103 10 C -0.161 4.161 11 H 0.141 0.859 12 C 0.557 3.443 13 O -0.584 6.584 14 N -0.641 5.641 15 C 0.115 3.885 16 C 0.021 3.979 17 C -0.526 4.526 18 H 0.066 0.934 19 C 0.021 3.979 20 N -0.917 5.917 21 Si 0.956 3.044 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.285 1.285 25 C 0.107 3.893 26 C 0.160 3.840 27 N -0.548 5.548 28 C 0.019 3.981 29 C 0.024 3.976 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.264 0.736 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -11.129 -17.676 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.042 4.042 3 H 0.130 0.870 4 C 0.332 3.668 5 O -0.446 6.446 6 N -0.380 5.380 7 C 0.029 3.971 8 C -0.144 4.144 9 C -0.140 4.140 10 C -0.183 4.183 11 H 0.159 0.841 12 C 0.349 3.651 13 O -0.467 6.467 14 N -0.374 5.374 15 C -0.008 4.008 16 C 0.001 3.999 17 C -0.564 4.564 18 H 0.084 0.916 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.782 3.218 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.211 1.211 25 C -0.016 4.016 26 C 0.038 3.962 27 N -0.272 5.272 28 C -0.129 4.129 29 C -0.124 4.124 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.058 0.942 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.051 -11.851 -18.490 22.333 hybrid contribution -0.836 0.616 1.115 1.524 sum -4.887 -11.235 -17.375 21.260 Atomic orbital electron populations 1.22295 0.93493 1.03149 1.04261 1.21575 0.95472 0.98527 0.88581 0.87023 1.20567 0.77296 0.85389 0.83499 1.90623 1.48062 1.20308 1.85657 1.50008 1.62759 1.18806 1.06382 1.22711 1.01705 0.92755 0.79923 1.22527 1.01747 0.95331 0.94819 1.22940 0.91725 1.01206 0.98098 1.22058 1.02758 0.96949 0.96512 0.84114 1.19666 0.81804 0.83235 0.80439 1.90597 1.45267 1.70490 1.40299 1.49917 1.45853 1.28983 1.12604 1.23367 0.96266 1.00559 0.80604 1.20277 0.93071 0.92399 0.94119 1.21246 0.93502 1.45986 0.95667 0.91624 1.25728 0.94837 0.94860 1.02459 1.70053 1.00221 1.49339 1.35946 0.85537 0.78703 0.77679 0.79913 1.18855 1.20670 1.21116 1.23202 0.98242 0.85490 0.94648 1.22580 0.98227 0.83873 0.91473 1.61833 1.57484 1.05147 1.02737 1.22542 0.96447 0.91056 1.02838 1.22498 1.00724 0.97478 0.91656 0.89625 0.91958 0.91086 0.89115 0.87886 0.88250 0.84930 0.90149 0.91921 0.94281 0.92697 0.92538 0.89944 0.88751 0.89404 0.94186 0.90718 0.91861 0.90736 0.90239 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 8.29 71.98 0.60 -2.08 16 2 C 0.07 1.36 2.44 44.17 0.11 1.47 16 3 H 0.11 1.93 7.87 -2.39 -0.02 1.91 16 4 C 0.54 13.70 7.23 87.65 0.63 14.33 16 5 O -0.57 -18.31 14.98 -3.03 -0.05 -18.36 16 6 N -0.64 -14.42 3.61 -847.43 -3.06 -17.48 16 7 C 0.15 2.99 8.85 86.24 0.76 3.76 16 8 C -0.14 -3.06 3.03 -52.40 -0.16 -3.21 16 9 C -0.10 -2.17 10.24 30.42 0.31 -1.86 16 10 C -0.16 -4.01 6.02 -11.71 -0.07 -4.08 16 11 H 0.14 3.09 8.14 -2.38 -0.02 3.07 16 12 C 0.56 18.82 7.86 87.65 0.69 19.51 16 13 O -0.58 -22.02 15.91 -3.05 -0.05 -22.07 16 14 N -0.64 -23.63 3.69 -857.73 -3.16 -26.79 16 15 C 0.11 4.43 8.00 83.27 0.67 5.09 16 16 C 0.02 0.93 3.79 -11.11 -0.04 0.88 16 17 C -0.53 -25.68 8.83 25.60 0.23 -25.45 16 18 H 0.07 3.12 7.81 -2.91 -0.02 3.09 16 19 C 0.02 1.07 5.46 84.65 0.46 1.54 16 20 N -0.92 -48.73 13.26 21.45 0.28 -48.44 16 21 Si 0.96 39.73 29.54 68.60 2.03 41.75 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 23 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.11 4.16 8.17 83.19 0.68 4.84 16 26 C 0.16 3.45 6.83 86.23 0.59 4.04 16 27 N -0.55 -10.84 4.73 -927.72 -4.39 -15.23 16 28 C 0.02 0.36 8.53 127.69 1.09 1.45 16 29 C 0.02 0.32 9.37 127.69 1.20 1.51 16 30 H 0.08 1.04 7.06 -2.39 -0.02 1.02 16 31 H 0.06 1.04 6.32 -2.39 -0.02 1.03 16 32 H 0.07 1.09 7.92 -2.39 -0.02 1.07 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.08 3.01 8.10 -2.38 -0.02 2.99 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 40 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.08 3.05 8.10 -2.39 -0.02 3.04 16 43 H 0.09 2.11 8.01 -2.39 -0.02 2.09 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.04 0.63 6.20 -2.39 -0.01 0.62 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.56 5.91 -2.39 -0.01 1.55 16 48 H 0.07 0.90 7.97 -2.38 -0.02 0.88 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.04 0.44 7.10 -2.39 -0.02 0.42 16 Total: -1.00 -63.28 406.18 0.27 -63.01 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.92 Total: 21.87 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 7.74 Total: 21.72 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -10.32 Total: -107.94 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.09 Total: -40.42 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -63.28 0.27 -63.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271779601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.759 kcal (2) G-P(sol) polarization free energy of solvation -63.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds