Wall clock time and date at job start Tue Mar 31 2020 18:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47397 * 2 1 4 4 C 1.50699 * 109.46931 * 119.99847 * 2 1 3 5 5 O 1.21283 * 120.00314 * 103.99319 * 4 2 1 6 6 N 1.34778 * 120.00201 * 283.99500 * 4 2 1 7 7 C 1.47724 * 134.39587 * 180.02562 * 6 4 2 8 8 C 1.53296 * 85.85595 * 155.90452 * 7 6 4 9 9 C 1.52473 * 128.84906 * 243.35398 * 8 7 6 10 10 C 1.52321 * 128.81945 * 163.01434 * 8 7 6 11 11 H 1.09006 * 117.52132 * 225.37735 * 10 8 7 12 12 C 1.50702 * 117.51636 * 10.45554 * 10 8 7 13 13 O 1.21277 * 120.00170 * 359.83151 * 12 10 8 14 14 N 1.34783 * 119.99743 * 179.83168 * 12 10 8 15 15 C 1.47584 * 134.48897 * 180.02562 * 14 12 10 16 16 C 1.53940 * 86.11486 * 155.35949 * 15 14 12 17 17 C 1.50704 * 113.74264 * 137.95302 * 16 15 14 18 18 H 1.07999 * 119.99799 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99832 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99409 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00332 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47156 * 90.00448 * 21 19 17 23 23 H 1.48502 * 109.47574 * 330.00444 * 21 19 17 24 24 H 1.48496 * 109.47496 * 210.00043 * 21 19 17 25 25 C 1.47578 * 134.49321 * 359.97438 * 14 12 10 26 26 C 1.47730 * 134.39203 * 359.97438 * 6 4 2 27 27 N 1.46893 * 109.47244 * 239.99497 * 2 1 3 28 28 C 1.46901 * 111.00184 * 312.12632 * 27 2 1 29 29 C 1.46903 * 110.99897 * 76.08049 * 27 2 1 30 30 H 1.09006 * 109.47259 * 59.99962 * 1 2 3 31 31 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47196 * 300.00283 * 1 2 3 33 33 H 1.08995 * 113.81059 * 41.67262 * 7 6 4 34 34 H 1.08997 * 113.80877 * 270.13385 * 7 6 4 35 35 H 1.08997 * 117.50610 * 134.69481 * 9 8 7 36 36 H 1.09004 * 117.58298 * 349.52567 * 9 8 7 37 37 H 1.08999 * 113.76644 * 41.05450 * 15 14 12 38 38 H 1.08996 * 113.86937 * 269.67224 * 15 14 12 39 39 H 1.09005 * 113.74478 * 269.15481 * 16 15 14 40 40 H 0.97001 * 119.99682 * 179.97438 * 20 19 17 41 41 H 1.09002 * 113.76358 * 90.34137 * 25 14 12 42 42 H 1.08996 * 113.76897 * 318.94604 * 25 14 12 43 43 H 1.08999 * 113.81280 * 89.86067 * 26 6 4 44 44 H 1.08999 * 113.80827 * 318.32951 * 26 6 4 45 45 H 1.09005 * 109.47260 * 59.99840 * 28 27 2 46 46 H 1.09001 * 109.47105 * 180.02562 * 28 27 2 47 47 H 1.09006 * 109.46928 * 299.99875 * 28 27 2 48 48 H 1.08995 * 109.47396 * 54.57026 * 29 27 2 49 49 H 1.08999 * 109.47170 * 174.57146 * 29 27 2 50 50 H 1.09005 * 109.47076 * 294.56895 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4738 -1.8366 1.1428 6 7 1.9907 -0.0943 2.4285 7 6 2.3844 -0.4748 3.8005 8 6 2.5015 1.0306 4.0652 9 6 3.7377 1.8436 4.4335 10 6 2.5514 1.7646 5.3989 11 1 1.9307 2.6540 5.5080 12 6 2.7219 0.9339 6.6448 13 8 2.8104 -0.2727 6.5617 14 7 2.7759 1.5322 7.8514 15 6 2.9309 1.0514 9.2381 16 6 3.4904 2.4513 9.5498 17 6 2.9918 3.0284 10.8496 18 1 2.3053 2.4637 11.4631 19 6 3.4111 4.2777 11.2551 20 7 2.9763 4.7810 12.3897 21 14 4.5979 5.2546 10.1938 22 1 3.8314 6.0950 9.2391 23 1 5.4718 4.3203 9.4396 24 1 5.4340 6.1252 11.0587 25 6 2.7047 2.9310 8.3164 26 6 1.5343 1.2316 2.8935 27 7 2.0196 -0.6926 -1.1993 28 6 1.3279 -1.9750 -1.3861 29 6 1.8841 0.1570 -2.3900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.3344 -1.0062 3.8543 34 1 1.5902 -0.9607 4.3673 35 1 3.8966 2.7846 3.9069 36 1 4.6413 1.2954 4.7000 37 1 3.6632 0.2514 9.3464 38 1 1.9868 0.8344 9.7378 39 1 4.5722 2.5263 9.4389 40 1 3.2717 5.6598 12.6752 41 1 1.6930 3.2674 8.5435 42 1 3.2564 3.6311 7.6891 43 1 0.4852 1.2574 3.1883 44 1 1.8118 2.0502 2.2295 45 1 0.2580 -1.7979 -1.4970 46 1 1.7098 -2.4669 -2.2806 47 1 1.5028 -2.6118 -0.5188 48 1 2.3830 1.1102 -2.2151 49 1 2.3411 -0.3406 -3.2454 50 1 0.8275 0.3319 -2.5933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271779602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:56 Heat of formation + Delta-G solvation = 30.028851 kcal Electronic energy + Delta-G solvation = -28940.729499 eV Core-core repulsion = 24971.411008 eV Total energy + Delta-G solvation = -3969.318491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.90231 -41.00077 -39.95483 -38.56056 -37.77848 -35.56407 -34.61994 -32.18629 -31.33356 -28.95265 -28.42188 -27.56701 -27.31423 -26.83225 -26.26541 -24.42040 -22.78943 -21.70526 -20.52801 -19.70830 -19.39836 -19.12597 -18.18616 -18.15221 -17.28275 -17.07393 -16.70252 -16.44871 -16.21687 -15.92693 -15.65793 -15.22468 -15.14504 -14.89251 -14.84677 -14.60007 -14.31383 -14.19336 -13.69645 -13.51663 -13.45311 -13.35206 -13.22558 -13.06129 -12.88471 -12.77786 -12.69830 -12.48869 -12.41209 -12.26816 -11.91106 -11.78946 -11.74146 -11.55387 -11.29181 -11.23087 -10.76950 -10.63568 -10.53347 -9.77818 -9.58150 -9.26861 -8.24192 -6.32523 1.41237 1.44052 1.48687 1.57097 1.57553 1.69834 1.94114 2.41899 2.71375 3.01696 3.06090 3.07379 3.30595 3.51828 3.68429 3.84198 3.93368 4.02708 4.09894 4.25094 4.31104 4.35981 4.36973 4.40645 4.46795 4.49798 4.53833 4.58823 4.59884 4.62365 4.66023 4.68413 4.72584 4.79359 4.81387 4.82167 4.85675 4.90944 4.93742 5.03204 5.09722 5.10121 5.13280 5.43278 5.63756 5.92695 6.07943 6.30521 6.68708 6.72738 6.89546 7.12605 7.18145 7.34883 8.91429 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029097 B = 0.002057 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.061344 B =13610.269167 C =14043.056250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.127 0.873 4 C 0.536 3.464 5 O -0.578 6.578 6 N -0.645 5.645 7 C 0.154 3.846 8 C -0.147 4.147 9 C -0.100 4.100 10 C -0.160 4.160 11 H 0.157 0.843 12 C 0.546 3.454 13 O -0.592 6.592 14 N -0.637 5.637 15 C 0.115 3.885 16 C -0.020 4.020 17 C -0.515 4.515 18 H 0.037 0.963 19 C 0.018 3.982 20 N -0.946 5.946 21 Si 0.939 3.061 22 H -0.249 1.249 23 H -0.243 1.243 24 H -0.295 1.295 25 C 0.103 3.897 26 C 0.156 3.844 27 N -0.552 5.552 28 C 0.019 3.981 29 C 0.025 3.975 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.267 0.733 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.042 0.958 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.965 0.234 -29.768 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.036 4.036 3 H 0.145 0.855 4 C 0.326 3.674 5 O -0.458 6.458 6 N -0.380 5.380 7 C 0.031 3.969 8 C -0.148 4.148 9 C -0.137 4.137 10 C -0.182 4.182 11 H 0.174 0.826 12 C 0.338 3.662 13 O -0.474 6.474 14 N -0.370 5.370 15 C -0.007 4.007 16 C -0.039 4.039 17 C -0.553 4.553 18 H 0.055 0.945 19 C -0.181 4.181 20 N -0.585 5.585 21 Si 0.763 3.237 22 H -0.173 1.173 23 H -0.167 1.167 24 H -0.222 1.222 25 C -0.019 4.019 26 C 0.035 3.965 27 N -0.276 5.276 28 C -0.129 4.129 29 C -0.122 4.122 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.168 0.832 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.187 -1.145 -30.090 30.402 hybrid contribution -0.405 -0.025 0.784 0.883 sum -4.592 -1.170 -29.306 29.687 Atomic orbital electron populations 1.22322 0.93209 1.02946 1.04811 1.21604 0.95554 0.98780 0.87662 0.85517 1.20884 0.77252 0.85457 0.83759 1.90640 1.48281 1.21074 1.85756 1.50064 1.62826 1.19326 1.05831 1.22347 0.99609 0.95036 0.79871 1.22580 1.02726 0.94330 0.95186 1.23013 0.90508 1.02280 0.97857 1.22149 1.06868 1.02252 0.86912 0.82554 1.20054 0.75197 0.87188 0.83757 1.90648 1.53515 1.16227 1.86965 1.50245 1.70440 1.11310 1.04972 1.23155 1.00036 0.98458 0.79095 1.20993 0.96812 0.92760 0.93335 1.20996 1.27600 1.02036 1.04643 0.94466 1.25910 0.97548 0.98689 0.95919 1.70059 1.46365 1.18535 1.23582 0.85833 0.79632 0.79007 0.79277 1.17344 1.16655 1.22181 1.23767 1.01656 0.82359 0.94102 1.22956 0.98313 0.84644 0.90570 1.61788 1.57650 1.05094 1.03119 1.22516 0.96545 0.91316 1.02498 1.22493 1.00840 0.97513 0.91374 0.89235 0.92890 0.90034 0.92752 0.90383 0.83213 0.89451 0.91664 0.90713 0.91685 0.92404 0.89345 0.89160 0.86857 0.85715 0.93980 0.91006 0.92457 0.90117 0.90772 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.29 71.98 0.60 -1.27 16 2 C 0.08 1.16 2.44 44.17 0.11 1.26 16 3 H 0.13 1.28 7.87 -2.39 -0.02 1.26 16 4 C 0.54 12.98 7.23 87.66 0.63 13.62 16 5 O -0.58 -19.82 14.98 -3.04 -0.05 -19.87 16 6 N -0.64 -13.52 3.61 -847.29 -3.06 -16.58 16 7 C 0.15 4.02 7.27 86.24 0.63 4.64 16 8 C -0.15 -2.76 3.04 -52.35 -0.16 -2.92 16 9 C -0.10 -1.70 10.24 30.47 0.31 -1.39 16 10 C -0.16 -3.38 5.94 -11.71 -0.07 -3.45 16 11 H 0.16 2.41 8.14 -2.38 -0.02 2.39 16 12 C 0.55 17.73 7.84 87.66 0.69 18.42 16 13 O -0.59 -23.40 15.86 -3.02 -0.05 -23.45 16 14 N -0.64 -21.86 3.61 -836.95 -3.02 -24.87 16 15 C 0.11 4.41 8.39 86.48 0.73 5.14 16 16 C -0.02 -0.80 2.90 -10.89 -0.03 -0.83 16 17 C -0.51 -26.28 9.33 25.60 0.24 -26.05 16 18 H 0.04 2.15 8.06 -2.91 -0.02 2.13 16 19 C 0.02 0.92 5.47 84.65 0.46 1.38 16 20 N -0.95 -54.74 13.96 21.45 0.30 -54.44 16 21 Si 0.94 38.34 27.17 68.60 1.86 40.20 16 22 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 23 H -0.24 -9.09 6.25 99.48 0.62 -8.47 16 24 H -0.30 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.10 3.42 7.47 86.47 0.65 4.06 16 26 C 0.16 1.82 8.41 86.23 0.73 2.55 16 27 N -0.55 -9.70 4.73 -927.72 -4.39 -14.09 16 28 C 0.02 0.35 8.53 127.69 1.09 1.44 16 29 C 0.02 0.25 9.37 127.69 1.20 1.45 16 30 H 0.09 0.61 7.06 -2.38 -0.02 0.60 16 31 H 0.05 0.76 6.32 -2.39 -0.02 0.74 16 32 H 0.08 0.67 7.93 -2.38 -0.02 0.65 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.25 8.01 -2.39 -0.02 2.23 16 35 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.93 8.09 -2.39 -0.02 2.91 16 39 H 0.07 2.65 6.58 -2.38 -0.02 2.64 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.09 2.92 8.09 -2.39 -0.02 2.90 16 42 H 0.09 2.48 8.08 -2.39 -0.02 2.46 16 43 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.04 0.62 6.19 -2.38 -0.01 0.60 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.45 5.91 -2.38 -0.01 1.44 16 48 H 0.08 0.62 7.97 -2.39 -0.02 0.60 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.04 0.31 7.10 -2.38 -0.02 0.29 16 Total: -1.00 -75.73 401.36 0.23 -75.50 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.84 Total: 19.54 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 7.79 Total: 18.06 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -10.16 Total: -109.98 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -0.09 Total: -43.32 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.86 Total: 40.20 kcal Total: -75.73 0.23 -75.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271779602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.529 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds